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LotjaGi1g1v0073700.1

Overview

Field Value
Gene ID LotjaGi1g1v0073700
Transcript ID LotjaGi1g1v0073700.1
Lotus japonicus genome version Gifu v1.2
Description RNA-directed DNA polymerase (Reverse transcriptase); TAIR: AT4G29090.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|F4NCI4|F4NCI4_BETVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0073700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:10595788..10597967) extracted from Lotus japonicus Gifu genome v1.2.

CCCGTTATCCCCTTATATGTTCATCCTATGTGGTGAGGTTTTTTCTGCACTAATTGAGCGACAAATGTTGTCTGGTGGCC TTCATGGTCTAAAAATTGCACGTTCTGCACCTGCTATTTCTCACCTTTTGTTTGCAGATGATAGTATAATTTTTTCCCGT GCAAGTGTTCATGAAGCAGAATGTGTAAAAAATATTTTGCGAACATATGAACAAGCATCGGGACAAGTGATTAACCTGGA TAAATCAATGCTTTCGGGTAGCCGAAATGTGCATGAAAATTGTCTTAATGAGCTTACACAGCTGTTGGGAGTAAAGGCAA TTGAAAGTTTTGATAAATATCTAGGATTACCTACTATTATTGGCAAATCCAAAACTCAAATTTTTAATTTTGTTAAAGAA AGAGTTTGGAAAAAATTGAAAGGTTGGAAAGAAAAATCACTTTCCCGTGCTGGGAGGGAAGTACTTATTAAATCTGTTGC TCAAGCTATTCCGTCTTATGTTATGTCATGTTTTATTTTACCTGATGGTATTTGTGCAGATATTGACCGGATGATTGCCC GTTTCTTTTGGGGCGGAGATGTGTCCCGGAGGGGACTTCATTGGACAAACTGGGCTAACTTGTGCAAGAGCAAGTGTGAG GGAGGGCTTGGTTTTAGGGACTTCAAAGCTTTTAATGAAGCTCTTGTGGCTAAAAATTGGTGGAGAATTTACATGTACCC GGATTCTTTGTTGGGTAGAGTTTTTAAAGCAGTTTATTTTCCTTCTGTGACTATCTTGGAGGCTAGAAAGGGATATAGGC CAAGCTATGCGTGGTCTAGTATCCTGAAAGCGGAGGGGAAAATAGAGGGTGGCTTGAGGTGGAGAGTGGGGGATGGTACA AAAATAAATTTGTTGCTAGATAAATGGCTCCCAGATGGTTCCCCTTTGGTTTATAGACAGGAAACTGTGGAAGACCTTAG GCTGGAGAAAGTGGCGGATTTGATAGATAATGGGCGCTGGAATGTTGAGTTGATCCAAGAGGCTTTTAGTCCTCTCACTG CCCAGAAAATTTTGGCAATTCCACTTGCAAACCAAGGTAATGTGGATTCTATATATTGGTTTGATTCCACTAATGGCATT TATGTGTGTAAGTCAGGATACAATTTCATCAGGTCCTTGGTGGCTAGAGAGGAGGCTTCAACATCCTCGGGCCCTCTACT CCAGGCGAAGCTTTGGCGCAGGTTCTGGGCTAGCCCAGCCTTGCCACGGTGCAAGGAAGTAGCTTGGAGGGCTGTACGAA ATTTTCTTCCAATGAGAGGAGAACTTGTGAAGAGGGGGATGCAGCTTGATCCATGCTGTCCTTTTTGCGAGACCGAAGTC GAGACATGTGGTCACTTGTTCTTGAAATGCCCTGCGGTAGAGAGGGTGTGGTTTGCGTCGGATTTGGCGATTAGAACTGA AAGTTTCAGCTCAGTTCATGCTTTGATGGTGGCGGTTTTAGAGGAGGATGATGTAGATTTTATAGCAGCAGTGCAACAGC TTATGTACGTGACTTGGGAGGCTCGGAACTCCATGGTGTTCAATGGGAGGAAACTGGATGTGGGAGATGTGCTGCGGAGG TCATCCATGTTGAAGCCTTGGGATGATGGTATTCATATTCCTCAATCACTGACAGCTTCACGCCCTGCAAATTGGAAGAG GCCAGAGGAAGGAATTGTCAAAATAAATTTTGATGCTTCTGTTAAGAACGAGATTGGTGGTCTAGGAATGGTGGCTCGGG ATACTCATGGTGCGATTCTAGGAGCTGCAGCTTTGTATCCGGTTAGTGTGATCTCCCCTTTGCTTGGCGAGGCTTGCGGT TTCCGATGGGCACTGAAGTTGGCGACGGAGTTTGGATTCCGATCAGTTTGCTTTGAAACTGACTGCTTACAGCTATTTGA ATGGTGGAAGAAGGGCTCTATTGGTTTGTCTTATTTAGATACTATTGTTCGCGAATGTCGTCTTTTTACTTCTACTTTTA GTTATTTTCAGTTTACTTTTGTGAGACGTTCAGGTAATTTAGTTGCCGATTTTCTTGCTAGGAATGCCTCTAATTTCCCC AACTCCGTTTGGGTGGAAGAGGTACCTCATGATGTAGATCACTTGGTGATCAACGATGCTTTGGCTTCATCGCCTGCTTT GATTTAATTTAATTCCAGGA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0073700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTCATCCTATGTGGTGAGGTTTTTTCTGCACTAATTGAGCGACAAATGTTGTCTGGTGGCCTTCATGGTCTAAAAAT TGCACGTTCTGCACCTGCTATTTCTCACCTTTTGTTTGCAGATGATAGTATAATTTTTTCCCGTGCAAGTGTTCATGAAG CAGAATGTGTAAAAAATATTTTGCGAACATATGAACAAGCATCGGGACAAGTGATTAACCTGGATAAATCAATGCTTTCG GGTAGCCGAAATGTGCATGAAAATTGTCTTAATGAGCTTACACAGCTGTTGGGAGTAAAGGCAATTGAAAGTTTTGATAA ATATCTAGGATTACCTACTATTATTGGCAAATCCAAAACTCAAATTTTTAATTTTGTTAAAGAAAGAGTTTGGAAAAAAT TGAAAGGTTGGAAAGAAAAATCACTTTCCCGTGCTGGGAGGGAAGTACTTATTAAATCTGTTGCTCAAGCTATTCCGTCT TATGTTATGTCATGTTTTATTTTACCTGATGGTATTTGTGCAGATATTGACCGGATGATTGCCCGTTTCTTTTGGGGCGG AGATGTGTCCCGGAGGGGACTTCATTGGACAAACTGGGCTAACTTGTGCAAGAGCAAGTGTGAGGGAGGGCTTGGTTTTA GGGACTTCAAAGCTTTTAATGAAGCTCTTGTGGCTAAAAATTGGTGGAGAATTTACATGTACCCGGATTCTTTGTTGGGT AGAGTTTTTAAAGCAGTTTATTTTCCTTCTGTGACTATCTTGGAGGCTAGAAAGGGATATAGGCCAAGCTATGCGTGGTC TAGTATCCTGAAAGCGGAGGGGAAAATAGAGGGTGGCTTGAGGTGGAGAGTGGGGGATGGTACAAAAATAAATTTGTTGC TAGATAAATGGCTCCCAGATGGTTCCCCTTTGGTTTATAGACAGGAAACTGTGGAAGACCTTAGGCTGGAGAAAGTGGCG GATTTGATAGATAATGGGCGCTGGAATGTTGAGTTGATCCAAGAGGCTTTTAGTCCTCTCACTGCCCAGAAAATTTTGGC AATTCCACTTGCAAACCAAGGTAATGTGGATTCTATATATTGGTTTGATTCCACTAATGGCATTTATGTGTGTAAGTCAG GATACAATTTCATCAGGTCCTTGGTGGCTAGAGAGGAGGCTTCAACATCCTCGGGCCCTCTACTCCAGGCGAAGCTTTGG CGCAGGTTCTGGGCTAGCCCAGCCTTGCCACGGTGCAAGGAAGTAGCTTGGAGGGCTGTACGAAATTTTCTTCCAATGAG AGGAGAACTTGTGAAGAGGGGGATGCAGCTTGATCCATGCTGTCCTTTTTGCGAGACCGAAGTCGAGACATGTGGTCACT TGTTCTTGAAATGCCCTGCGGTAGAGAGGGTGTGGTTTGCGTCGGATTTGGCGATTAGAACTGAAAGTTTCAGCTCAGTT CATGCTTTGATGGTGGCGGTTTTAGAGGAGGATGATGTAGATTTTATAGCAGCAGTGCAACAGCTTATGTACGTGACTTG GGAGGCTCGGAACTCCATGGTGTTCAATGGGAGGAAACTGGATGTGGGAGATGTGCTGCGGAGGTCATCCATGTTGAAGC CTTGGGATGATGGTATTCATATTCCTCAATCACTGACAGCTTCACGCCCTGCAAATTGGAAGAGGCCAGAGGAAGGAATT GTCAAAATAAATTTTGATGCTTCTGTTAAGAACGAGATTGGTGGTCTAGGAATGGTGGCTCGGGATACTCATGGTGCGAT TCTAGGAGCTGCAGCTTTGTATCCGGTTAGTGTGATCTCCCCTTTGCTTGGCGAGGCTTGCGGTTTCCGATGGGCACTGA AGTTGGCGACGGAGTTTGGATTCCGATCAGTTTGCTTTGAAACTGACTGCTTACAGCTATTTGAATGGTGGAAGAAGGGC TCTATTGGTTTGTCTTATTTAGATACTATTGTTCGCGAATGTCGTCTTTTTACTTCTACTTTTAGTTATTTTCAGTTTAC TTTTGTGAGACGTTCAGGTAATTTAGTTGCCGATTTTCTTGCTAGGAATGCCTCTAATTTCCCCAACTCCGTTTGGGTGG AAGAGGTACCTCATGATGTAGATCACTTGGTGATCAACGATGCTTTGGCTTCATCGCCTGCTTTGATTTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0073700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MFILCGEVFSALIERQMLSGGLHGLKIARSAPAISHLLFADDSIIFSRASVHEAECVKNILRTYEQASGQVINLDKSMLS GSRNVHENCLNELTQLLGVKAIESFDKYLGLPTIIGKSKTQIFNFVKERVWKKLKGWKEKSLSRAGREVLIKSVAQAIPS YVMSCFILPDGICADIDRMIARFFWGGDVSRRGLHWTNWANLCKSKCEGGLGFRDFKAFNEALVAKNWWRIYMYPDSLLG RVFKAVYFPSVTILEARKGYRPSYAWSSILKAEGKIEGGLRWRVGDGTKINLLLDKWLPDGSPLVYRQETVEDLRLEKVA DLIDNGRWNVELIQEAFSPLTAQKILAIPLANQGNVDSIYWFDSTNGIYVCKSGYNFIRSLVAREEASTSSGPLLQAKLW RRFWASPALPRCKEVAWRAVRNFLPMRGELVKRGMQLDPCCPFCETEVETCGHLFLKCPAVERVWFASDLAIRTESFSSV HALMVAVLEEDDVDFIAAVQQLMYVTWEARNSMVFNGRKLDVGDVLRRSSMLKPWDDGIHIPQSLTASRPANWKRPEEGI VKINFDASVKNEIGGLGMVARDTHGAILGAAALYPVSVISPLLGEACGFRWALKLATEFGFRSVCFETDCLQLFEWWKKG SIGLSYLDTIVRECRLFTSTFSYFQFTFVRRSGNLVADFLARNASNFPNSVWVEEVPHDVDHLVINDALASSPALI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46736:SF3
27 708 682 8.8E-137 –
PANTHER
PTHR46736
27 708 682 8.8E-137 –
Pfam
PF13966
371 465 95 4.9E-17
IPR026960
SUPERFAMILY
SSF53098
560 688 129 7.84E-10
IPR012337
Gene3D
G3DSA:3.30.420.10
560 688 129 1.4E-9
IPR036397
CDD
cd06222
563 682 120 6.44008E-21 –
Pfam
PF13456
564 684 121 2.4E-21
IPR002156

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0004523
Molecular function RNA-DNA hybrid ribonuclease activity Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0073700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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