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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0073800 |
| Transcript ID | LotjaGi1g1v0073800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dehydration-responsive element-binding protein; TAIR: AT2G40340.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q8LFR2|DRE2C_ARATH Dehydration-responsive element-binding protein 2C; TrEMBL-Plants: tr|W5ZSZ5|W5ZSZ5_9FABA DREB group protein; Found in the gene: LotjaGi1g1v0073800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:10607286..10609679) extracted from Lotus japonicus Gifu genome v1.2.
TCGAGAGTGAAAGAGAAAGAGAAAGAGAGACAGAACAACACTGAAAAAACACAGAAACGAAGAAAGGTGAACGAAGAAGA AGAAAACCCTAGCTTCTCTTGCAAGTCGCAAATTCAATTTCATCGAGTTCGTGTTAGGTTAGTTGTAACTTGCATTCTTC AACTCTTCACTCTCTCTTTGTGATTTCTTAGCAGCTAGTTTTTGTGATTTTTGCATTCTCGCTTCACAAATTTACAATTT CTAGTTCTGTCTATGATGCTGATTTAGGGGATTTTTTTTTGTTTTTTGGTTGTGGTTTCTGCTTGTTGCTGCTAGATTCT TAGATAGTGTTAGTGTCGCATTTTGTTGTAATTTTATAACAAAAATTAAATAAATAAATAAAACTTGCTTACCAAGTTTT TTTCCGTTTTTGTTAATGTTTATCTTTATCTATGTTACTTGGGGACTAAGGAAATTTGATTCGTACTTAGATTTAGTTTA TATTTTATACTTTAGATGTGTATATATATATATATATATATATCCTATTTGTATTTTACCACCTTTTCTCTCTGCTTTGA GCTTTTTGTTGAATAAGGATTTGGGGGTTTTGATTTTTGAGCATTGTGCTTAATTCGGTTCTGTTTTTTTCTTCTCTATA GCAGATTGTGATTTGATTGTTGAAGTTGTCATGGGAGTTTATGACCAAGCTTTGGTGGATTCCTCAAGAAAGAGGAAGAG CAGGAGTAGGCGAGATGGGCCTCAATCTGTGGCGGAGAAATTAGCGAAGTGGAAGGAGTACAATGAGAGTCTTTACTCAG GTAAGGTTGAAGGTAAACCGAAGCGAAAAGCGCCTGCGAAGGGTTCAAAGAAAGGGTGTATGAAAGGTAAAGGAGGGCCT GAAAACTATCAGTGTAACTACAGGGGTGTGAGGCAGAGGACATGGGGGAAGTGGGTTGGTGAGATTAGGGAGCCTAATAG AGGGAGCAGGCTTTGGTTAGGTACTTTTCCTACTGCACAGGAAGCTGCTCTTGCTTATGATGAAGCTGCTAGGGTCATGT ATGGTCCTTGCGCCCGCCTCAATTTTCCTCACATCGCGGATTATAGTTCTATCAGAGAGTCATTGAAGGGGTCTTCATTG GCTGCTGGTGGTGTAAGCTGTTCTTGTTCCTCCGCAGCTACGCCGGCTACCTCTGATACGACTACTGTATCTAATCGGTC TGAGGTTTGTGCGGCGGAGGATGTTAAGGTGAAACCTCGAGGTTTAAGTATGAATGGAACTGTCAGCGGTTGTCATAATA GGGATTATGAACATACCTCACCAACTAGTAAGATGAAGCAAGAGCCTAAGGATGAGCCGGCGGACCCGATAGAACATAGG GCTGTGGAAATTCAAGATGTCAAGCCATTGGGAGTACAATGTGCGGGGTTGGTTGCCGAGGATGTAAATAAAGATAAGAT GGATTTGTCATGGATTGATAACTTTGATTTAAGTAATGGTGATTACATGAACAGCTACTCCATGGATGAGTTTTTTCGAG TGGATGAACTTTTGGGGCATATGGACAACGATCCAATTGATGGTTCTGGGTTGATGCAAGGTTTGGATTTTGGACTGGAT TTTACTGGAGATAGTAATCCTCAGGTGGAGACGCCTTCGAGCTTCTTCTATCAACTGCAGAATCCAGATGCCAAGCTGCT GGGAAGTTTGCCTCATATGGATCAGATACCATCTGATGTTGACTATGGGTTAGACTTCTTGAAAACTGAAGAGCCAGGGA ACTATAATGGTGGAGGAGCGGAAGAGCCACAGTTTTTTAATTTGGATTATGATGTGAACCCTGCTTCTAAGGGAATGCAA GAAAAGAACTAGAGTAGAGAAGGCTTCATCCACAAGTCTTGCTAGAGAGGATATGCTTTACTTTGTCAACTGGCTCAAGG CTTTTAATCTGTGTCCTGGGTTTGGTTCCTTTAGGTATAGGTGCATAAAAAAATACAACAGTTGTCTCTTTCTTAAGTTC TTTTGGTTTATGCTAATTCTCTATATGTTTTTTTTTAGAAAAAGGGAGAATTTAGCTGACAACATTTGTTAATTTTTTCT TTCAAGTTACTGTTTTCTGGGTCCAAACTGTATAGTCGTTTGTAGATCTAATACAGCAATTTTGAGCACTGATCTTGACA AAAGTTTCTTGTTATATATGAGGAAAAACTAGTATACCAATAATTGCTGACATTTTTTGTGTTAGAACTTCGTTACTGTT CCAATTGTTTTGCTATATTTGTGATTATACTGCATGGAAGTTCAAATGGATGTGTGGAGTCTGTAGGATGTGTACACTCG AAGATATTTGCTGATTTATATCAGAAGAATTCATCACCCTTATAGGTCATGTTTGCTGTATGGATGTCCCAAAG
CDS sequence (LotjaGi1g1v0073800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGTTTATGACCAAGCTTTGGTGGATTCCTCAAGAAAGAGGAAGAGCAGGAGTAGGCGAGATGGGCCTCAATCTGT GGCGGAGAAATTAGCGAAGTGGAAGGAGTACAATGAGAGTCTTTACTCAGGTAAGGTTGAAGGTAAACCGAAGCGAAAAG CGCCTGCGAAGGGTTCAAAGAAAGGGTGTATGAAAGGTAAAGGAGGGCCTGAAAACTATCAGTGTAACTACAGGGGTGTG AGGCAGAGGACATGGGGGAAGTGGGTTGGTGAGATTAGGGAGCCTAATAGAGGGAGCAGGCTTTGGTTAGGTACTTTTCC TACTGCACAGGAAGCTGCTCTTGCTTATGATGAAGCTGCTAGGGTCATGTATGGTCCTTGCGCCCGCCTCAATTTTCCTC ACATCGCGGATTATAGTTCTATCAGAGAGTCATTGAAGGGGTCTTCATTGGCTGCTGGTGGTGTAAGCTGTTCTTGTTCC TCCGCAGCTACGCCGGCTACCTCTGATACGACTACTGTATCTAATCGGTCTGAGGTTTGTGCGGCGGAGGATGTTAAGGT GAAACCTCGAGGTTTAAGTATGAATGGAACTGTCAGCGGTTGTCATAATAGGGATTATGAACATACCTCACCAACTAGTA AGATGAAGCAAGAGCCTAAGGATGAGCCGGCGGACCCGATAGAACATAGGGCTGTGGAAATTCAAGATGTCAAGCCATTG GGAGTACAATGTGCGGGGTTGGTTGCCGAGGATGTAAATAAAGATAAGATGGATTTGTCATGGATTGATAACTTTGATTT AAGTAATGGTGATTACATGAACAGCTACTCCATGGATGAGTTTTTTCGAGTGGATGAACTTTTGGGGCATATGGACAACG ATCCAATTGATGGTTCTGGGTTGATGCAAGGTTTGGATTTTGGACTGGATTTTACTGGAGATAGTAATCCTCAGGTGGAG ACGCCTTCGAGCTTCTTCTATCAACTGCAGAATCCAGATGCCAAGCTGCTGGGAAGTTTGCCTCATATGGATCAGATACC ATCTGATGTTGACTATGGGTTAGACTTCTTGAAAACTGAAGAGCCAGGGAACTATAATGGTGGAGGAGCGGAAGAGCCAC AGTTTTTTAATTTGGATTATGATGTGAACCCTGCTTCTAAGGGAATGCAAGAAAAGAACTAG
Protein sequence (LotjaGi1g1v0073800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVYDQALVDSSRKRKSRSRRDGPQSVAEKLAKWKEYNESLYSGKVEGKPKRKAPAKGSKKGCMKGKGGPENYQCNYRGV RQRTWGKWVGEIREPNRGSRLWLGTFPTAQEAALAYDEAARVMYGPCARLNFPHIADYSSIRESLKGSSLAAGGVSCSCS SAATPATSDTTTVSNRSEVCAAEDVKVKPRGLSMNGTVSGCHNRDYEHTSPTSKMKQEPKDEPADPIEHRAVEIQDVKPL GVQCAGLVAEDVNKDKMDLSWIDNFDLSNGDYMNSYSMDEFFRVDELLGHMDNDPIDGSGLMQGLDFGLDFTGDSNPQVE TPSSFFYQLQNPDAKLLGSLPHMDQIPSDVDYGLDFLKTEEPGNYNGGGAEEPQFFNLDYDVNPASKGMQEKN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| PANTHER | 5 | 392 | 388 | 4.8E-176 | – | |
| PANTHER | 5 | 392 | 388 | 4.8E-176 | – | |
| MobiDBLite | 9 | 29 | 21 | - | – | |
| MobiDBLite | 45 | 66 | 22 | - | – | |
| Pfam | 75 | 125 | 51 | 9.4E-12 | ||
| CDD | 75 | 134 | 60 | 1.01814E-31 | ||
| SUPERFAMILY | 76 | 134 | 59 | 5.62E-21 | ||
| SMART | 76 | 139 | 64 | 1.7E-34 | ||
| ProSiteProfiles | 76 | 133 | 58 | 21.759 | ||
| Gene3D | 76 | 135 | 60 | 6.1E-31 | ||
| PRINTS | 77 | 88 | 12 | 3.2E-10 | ||
| PRINTS | 99 | 115 | 17 | 3.2E-10 | ||
| MobiDBLite | 198 | 223 | 26 | - | – | |
| MobiDBLite | 207 | 223 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0073800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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