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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0075500 |
| Transcript ID | LotjaGi1g1v0075500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ethylene-responsive transcription factor; TAIR: AT2G40220.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|A0MES8|ABI4_ARATH Ethylene-responsive transcription factor ABI4; TrEMBL-Plants: tr|A0A1J7HK40|A0A1J7HK40_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0075500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:10906338..10908028) extracted from Lotus japonicus Gifu genome v1.2.
GCAAAATTAGCAACAACACCGCCCTATTCCACCATTAACAAGAATGACATGAAACCACTTTCACCAGAACAAACCCTCTC TCTCTCTCTCTCTATCTCTCTCCAACCCTCATCACCCTGAACGAGGCAACCAAGCGTCTCCATCCATCTATCTTTTCCCT TTCACTCTTTAATAATTAAAACCTCTCCCACCAACAAATGGACGACGCAACAACAACACCTCATCACCCTCCCCAAGAAA TCACCAAACCCACCGCCACCGCCGCCATCACCACCACTCCCAGCGAAACATCTAACAGTGAAAACAGCAACAGCAGTCAC AATAACAATATCACCACCCCCAACACCAGCACCACCATTAATAACCGTAAGTGCAAAGGCAAAGGTGGACCTGACAACAA CAAATTCAGATACCGTGGCGTGAGGCAACGCAGCTGGGGAAAATGGGTTGCTGAGATCCGTGAGCCGAGAAAGCGGACGC GTAAGTGGCTTGGGACGTTCTCCACCGCCGAAGACGCCGCCAGAGCGTATGACCGCGCCGCCATTATCCTCTATGGTTCT AGGGCTCAGCTGAACCTCCAACCTTCTCCTACCTCATCTTCCTCTCAATCTTCATCCTCCTCCTCACGCGCCTCTTCGTC TTCATCGTCAACTCAAACGCTCCGTCCTCTCCTCCCTCGCCCTTCCGGCTACGGCTTTAGCTTTTCCGGTTCTCATCTTC CGGTGGTTTTCAGCGCCGCCGCCTCCGGACCGTTCGGGTTTTATAACGCCAATAATGGTTACATGCAACTGCAGCCGCAA CAGCACCACTTCCATCATCAGGAAGTGGTGCAATCGCAACTACAACCGCAATTGCAACAGTGTCGACAACCTGAACCTGA TGTGAAAGGTGGTGGGGTTGTTGATCATGTCAGATCAACCTCGTACCAGAATCAACATAGCCACCATCATCAGGATCAGG TTGTTATGCAAAACTATCCTGTGTTGAATCATCAGCAGCATAATCAGAATTGCATGGGTGAGGGAGTGAGTGATAACACT TTGGTGGGGCCGAGCTTGGCTTCTCAGAACTTCGTTCATATCGATGCTGCACCAATGGATCCGGATCCGGGTTCGGGTAT CGGTTCTCCATCTATATGGCCTTTGACAAGTACTGAGTTGGAAGATTATAATCCGGTTTGCCTCTGGGATTACAATGACC CTTTCTTCCTTGATTTTTAATGATGCATGTTTGGAAACCCTTCTACAATTGATCTAAAAGTAAAATCAATTTTGGGCAAA ATTAATTGTGAGAAGCTGGTTTCTAGCGGTCTGATGATTCGAACATGCATGCAATAAGTTGCGCTTGCTTGATTAAGTTT TTGTTAATTATTTCCATGTTATTTCGATTGGTTTGAATTTGATTAGTATACTCAAGGAAAATCATATATATAGATACATC AATACTATTTGTGAATAAAGTGTTGGGTGGTGATGAAATGATAGTTTGTGGCTTATTAGTATTAAATAATTATTGTGGAT ATGAGGGTGGGGGAATTCTTCTGGAGAAACCCTAGTGGTTCAATTGCTGGTGCTAGCTGCTTTTGCAAGTTGCAGTCAAT ACAATTAGCTTCGCCCACTGTCTCGTCTAATTATATATGCGGTGAGTTCTTTTTTTTATGCAGAACTGATAGTTCATGTA TGATTATTGTT
CDS sequence (LotjaGi1g1v0075500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGACGCAACAACAACACCTCATCACCCTCCCCAAGAAATCACCAAACCCACCGCCACCGCCGCCATCACCACCAC TCCCAGCGAAACATCTAACAGTGAAAACAGCAACAGCAGTCACAATAACAATATCACCACCCCCAACACCAGCACCACCA TTAATAACCGTAAGTGCAAAGGCAAAGGTGGACCTGACAACAACAAATTCAGATACCGTGGCGTGAGGCAACGCAGCTGG GGAAAATGGGTTGCTGAGATCCGTGAGCCGAGAAAGCGGACGCGTAAGTGGCTTGGGACGTTCTCCACCGCCGAAGACGC CGCCAGAGCGTATGACCGCGCCGCCATTATCCTCTATGGTTCTAGGGCTCAGCTGAACCTCCAACCTTCTCCTACCTCAT CTTCCTCTCAATCTTCATCCTCCTCCTCACGCGCCTCTTCGTCTTCATCGTCAACTCAAACGCTCCGTCCTCTCCTCCCT CGCCCTTCCGGCTACGGCTTTAGCTTTTCCGGTTCTCATCTTCCGGTGGTTTTCAGCGCCGCCGCCTCCGGACCGTTCGG GTTTTATAACGCCAATAATGGTTACATGCAACTGCAGCCGCAACAGCACCACTTCCATCATCAGGAAGTGGTGCAATCGC AACTACAACCGCAATTGCAACAGTGTCGACAACCTGAACCTGATGTGAAAGGTGGTGGGGTTGTTGATCATGTCAGATCA ACCTCGTACCAGAATCAACATAGCCACCATCATCAGGATCAGGTTGTTATGCAAAACTATCCTGTGTTGAATCATCAGCA GCATAATCAGAATTGCATGGGTGAGGGAGTGAGTGATAACACTTTGGTGGGGCCGAGCTTGGCTTCTCAGAACTTCGTTC ATATCGATGCTGCACCAATGGATCCGGATCCGGGTTCGGGTATCGGTTCTCCATCTATATGGCCTTTGACAAGTACTGAG TTGGAAGATTATAATCCGGTTTGCCTCTGGGATTACAATGACCCTTTCTTCCTTGATTTTTAA
Protein sequence (LotjaGi1g1v0075500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDATTTPHHPPQEITKPTATAAITTTPSETSNSENSNSSHNNNITTPNTSTTINNRKCKGKGGPDNNKFRYRGVRQRSW GKWVAEIREPRKRTRKWLGTFSTAEDAARAYDRAAIILYGSRAQLNLQPSPTSSSSQSSSSSSRASSSSSSTQTLRPLLP RPSGYGFSFSGSHLPVVFSAAASGPFGFYNANNGYMQLQPQQHHFHHQEVVQSQLQPQLQQCRQPEPDVKGGGVVDHVRS TSYQNQHSHHHQDQVVMQNYPVLNHQQHNQNCMGEGVSDNTLVGPSLASQNFVHIDAAPMDPDPGSGIGSPSIWPLTSTE LEDYNPVCLWDYNDPFFLDF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 73 | 73 | - | – | |
| MobiDBLite | 9 | 58 | 50 | - | – | |
| PANTHER | 15 | 340 | 326 | 1.4E-99 | – | |
| PANTHER | 15 | 340 | 326 | 1.4E-99 | ||
| SUPERFAMILY | 71 | 128 | 58 | 7.19E-21 | ||
| ProSiteProfiles | 71 | 128 | 58 | 22.418 | ||
| SMART | 71 | 134 | 64 | 6.3E-39 | ||
| Gene3D | 71 | 129 | 59 | 1.2E-28 | ||
| CDD | 71 | 128 | 58 | 1.29927E-20 | ||
| Pfam | 71 | 116 | 46 | 1.8E-11 | ||
| PRINTS | 72 | 83 | 12 | 1.8E-10 | ||
| PRINTS | 94 | 110 | 17 | 1.8E-10 | ||
| MobiDBLite | 126 | 157 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Abscisic acid-activated signaling pathway | A series of molecular signals generated by the binding of the plant hormone abscisic acid (ABA) to a receptor, and ending with modulation of a cellular process, e.g. transcription. | ||
| Molecular function | Transcription regulatory region DNA binding | Interacting selectively and non-covalently with a DNA region that regulates the transcription of a region of DNA, which may be a gene, cistron, or operon. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors. |
Expression pattern of LotjaGi1g1v0075500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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