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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0076200 |
| Transcript ID | LotjaGi1g1v0076200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix-loop-helix transcription factor; TAIR: AT2G40200.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9XEF0|BH051_ARATH Transcription factor bHLH51; TrEMBL-Plants: tr|I3T8G7|I3T8G7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0076200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:10972046..10974237) extracted from Lotus japonicus Gifu genome v1.2.
CGTTAAGTACAACTTGAATTCACGTTAAATTTTATGGAAACTCAAACTCACTCTTAAAAATTCTTTGAAAAAGTCTGGTA AAGATTTATTAGGGAGGGGCGTTTTTTCTTGCTGATGAAGTGACAGGCAGAAGCAGCCAAAAACGATTTTCATCTGGCCC ATTAAAGGCTATATTGCATCATATCACACCAATCACATACAAGATAAGAAGAAGACACCACTCATTAATTAAACAGTAGG AGTGAATGGGAGATAAAAAGCTCACAAAGCTTCTACTTTAGAATGGTTGCTAGTACTTACAGTTGTGTGTGCATATGGAA AATTACTACTATTCTGGGTGGCCTTTGTGTACAAACTGGGCTCAATGTGATTCTGCACCAAACACTGATCAATCTCCTTC TTCATCAGTCCCCACACAAACACTGCCTTTAGCCTCTGACACTGCTTCTCTTCAATTTGGCAAGTTCCCCATTTGGCCCG AAACCATTGAAGGGGTTGCAGAACATGAACATGGAGCTGCAAGTGCTTCCAAGAGCCACAGCCAAGCAGAGAAAAGGCGC AGGGACAGGATTAATGCACAGCTTGCAACTCTCAGAAAACTCATTCCCAAGTCTGATAAGGTAAAGAAAAAAACTTCACC ATATGTTTCTTTTAATAATTTGGCATGGTTGGTTACTCCTATCAAGTGTACTAATAGAATATCTGTAAATTCTTATACAA TTGATTCTAAAGTCAGAATCAATTATTTGTGAGCAGCTTCTATGAAACAAAATTAATTATGAGGAAAAATAAGCTGAACC AACCGCCATATAGCTTTTAATAATTGGCATTGTTGGCTCTTCCAATCAAGTATACTAATTAAACCTTGGATACTAAACTA GGACACCAAGCAAGAAAATGGAATTTACCTGCTCAAAGCATATGGTTGGACTTGGACCAACTTCTCTTTTCTTATAATCA ATTCTGAAAATTAGAAACTACTTATAGAAAGCTTCTCCCCGTAATTGGTTTTGGCTTTATAATCAATTTTAGAAACATTT CCTAGCTTGCACTGAGAGTGATATGATATATTGGACATCATTAAGATATAAGTTTCAGATTCTATCCATTGTAAGTTATG GCATTTCACTGTTACTTCCTTCATGGATAGCATGGTCACTTTCAATTATATACTATGAATATGTCATATAGTTTTCAGTT CCACTTCCTCAACATGAATAGTGAGAGAAACTATTAACATGTTTGGATCAGTTTCTCTTTTCTCATATCAATTGTGAAAT GTAGAAGCTACTCACAAAAGCTTTTCTCATAATTGATTATGACTTTAAGATCAATTATAGATCCACTATAAATAGTAAAT TAATGTGGTTGCAGATGGACAAGGCAGCTTTACTAGGGAGTGTTGTAGACCATGTCAAAGATCTGAAGAGAAAAGCCATA GATGTCAGCAAAGCCAGTAGTACTATTCCAACTGAAATTGATGAAGTAACAATTGACTATCACGAAGCTCAAGATCATGA AAGCTACATTAAAAACACGTTCAGAGCTTCTGTTTGCTGTGATGATAGACCAGAGCTGTTCCCTGAGCTCATACAAGTGT TCAAAGGTTTGAGACTTAAAGCAGTTAAAGCTGACATGGTCAGTGTGGGTGGAAGAATCAAAAGCATATTGGTGCTTTGC TCAAAGGAGAGCGAAGAAGGCAGTGTTTGCCTTAGCACTCTCAAACAATCGCTTAAATCAGCTGTGAACAAAATTTCTTC TTTGTCTGTGGCATCAAACTGTCCCCCTAGAAGTAAGAGGCAGAGGTTCTTCTTGCCTTCTCCTTGCATACAATAATTTA TTGCAAAATCTCTTATTACGATTATTGTTATCATTATTTTTATTCTTTAGGAGGATAATTTCAGTAGGTGGAATTATTTG TTTTCATTTTACAATGTTCATTGGCCTATAATTTATAGTGTCTCTTTGGATATCAGCTAATTGTAATGTGAACAGACTTT TTGTCCCTATATAAAAGAAGAGTTTTGTTCATTTTTTAATTCGAAGTGAGTGTTAACGTTTGTTAACACGAAAATGGACT GTGCAGACAATTCTTAGTGTAGTAGTTGAGCGATCTCGGTCATTGAATGAAAATCAAACGGCTCAAATTCTAAAAATATG TTTTACATATAATTTATTACACTGAAATCATC
CDS sequence (LotjaGi1g1v0076200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAATTACTACTATTCTGGGTGGCCTTTGTGTACAAACTGGGCTCAATGTGATTCTGCACCAAACACTGATCAATC TCCTTCTTCATCAGTCCCCACACAAACACTGCCTTTAGCCTCTGACACTGCTTCTCTTCAATTTGGCAAGTTCCCCATTT GGCCCGAAACCATTGAAGGGGTTGCAGAACATGAACATGGAGCTGCAAGTGCTTCCAAGAGCCACAGCCAAGCAGAGAAA AGGCGCAGGGACAGGATTAATGCACAGCTTGCAACTCTCAGAAAACTCATTCCCAAGTCTGATAAGATGGACAAGGCAGC TTTACTAGGGAGTGTTGTAGACCATGTCAAAGATCTGAAGAGAAAAGCCATAGATGTCAGCAAAGCCAGTAGTACTATTC CAACTGAAATTGATGAAGTAACAATTGACTATCACGAAGCTCAAGATCATGAAAGCTACATTAAAAACACGTTCAGAGCT TCTGTTTGCTGTGATGATAGACCAGAGCTGTTCCCTGAGCTCATACAAGTGTTCAAAGGTTTGAGACTTAAAGCAGTTAA AGCTGACATGGTCAGTGTGGGTGGAAGAATCAAAAGCATATTGGTGCTTTGCTCAAAGGAGAGCGAAGAAGGCAGTGTTT GCCTTAGCACTCTCAAACAATCGCTTAAATCAGCTGTGAACAAAATTTCTTCTTTGTCTGTGGCATCAAACTGTCCCCCT AGAAGTAAGAGGCAGAGGTTCTTCTTGCCTTCTCCTTGCATACAATAA
Protein sequence (LotjaGi1g1v0076200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENYYYSGWPLCTNWAQCDSAPNTDQSPSSSVPTQTLPLASDTASLQFGKFPIWPETIEGVAEHEHGAASASKSHSQAEK RRRDRINAQLATLRKLIPKSDKMDKAALLGSVVDHVKDLKRKAIDVSKASSTIPTEIDEVTIDYHEAQDHESYIKNTFRA SVCCDDRPELFPELIQVFKGLRLKAVKADMVSVGGRIKSILVLCSKESEEGSVCLSTLKQSLKSAVNKISSLSVASNCPP RSKRQRFFLPSPCIQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 24 | 254 | 231 | 1.2E-92 | – | |
| PANTHER | 24 | 254 | 231 | 1.2E-92 | – | |
| Gene3D | 61 | 120 | 60 | 2.0E-16 | ||
| MobiDBLite | 64 | 83 | 20 | - | – | |
| ProSiteProfiles | 70 | 119 | 50 | 15.415 | ||
| Pfam | 73 | 120 | 48 | 3.1E-12 | ||
| CDD | 73 | 122 | 50 | 1.67461E-11 | ||
| SUPERFAMILY | 73 | 132 | 60 | 4.84E-13 | ||
| SMART | 76 | 125 | 50 | 5.5E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi1g1v0076200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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