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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0078000 |
| Transcript ID | LotjaGi1g1v0078000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein yippee-like; TAIR: AT2G40110.1 Yippee family putative zinc-binding protein; Swiss-Prot: sp|P59234|YIPL_SOLTU Protein yippee-like; TrEMBL-Plants: tr|V4SME6|V4SME6_9ROSI Protein yippee-like; Found in the gene: LotjaGi1g1v0078000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:11298453..11301372) extracted from Lotus japonicus Gifu genome v1.2.
ATGCAAGCAAAGCAACCAAATTGCATTAATCAATAATGAAAAAAACGAATGCAGAAAAATTAAAACCCACGTCACGTCTT GTCGGTTTATACTTTTACAGAAAAAAAGTGATGATTGATTGCTTCACCTTCCACATTTCTTGCAACTCCAAATCATCTTC ACCAAACTCTGGTAACATTCAACCATTCTCTTCTTCATCTTCACCAAACTCTGGTAACATTCAACCATTCTCTTCTTCAT CTTCATCTTCCTCTTTGTGCTTAATTCACGCTATTATATACACTCATCGCTTCAATTTGACACTGCTTTTGATTTCTTTT GACTGGGTCGTTGTTCTTTTGTTGATTTTCACGTTGACCCTTTTTTCATCTTACAATCTTGTTTGATCTTCTTCAGTTCT CGGCGGTTAAACCATGGGGAGGTTGTTTGCGGTTCATCTGGAAGGGAGAGTCTATAGCTGTAAACACTGTCGGACCCATC TTGCTCTTTGTGAAGACATCGTCTCCAAGGTTTTCATTTTTTCATTCATTTTCTGCAGATTTTTATGACCCTGTACTTTT TTCTGGGTTTTTAATTCTGGGTTTTTGTTTTCCTGTAAGATGAGTTTGTTCTCTAATGTGGGTAGGAGCTAGAATTCATC AGGGTATTAATATGTCATAATATTTGGCTCTTGATTAGTTTAGCAGGGGAATTTTTTTTTTCCATTTCAGAATTTTGTCA GTAAGAATTTGATTATAGATTTGTAGCCATAACATGTGTGTTTCTTTAGAAGATTGGAAATGCTTTTTGCTTCCTGCATG ATATATATACATACATGATTAGATCTAACGGTCGTGATTTATTCTCATTTTCTCATGTAAGATCATCTTTCTCATAAGAT ACATCCTCATATATATATATATATATAAAGAATCAATTTTTGATAGCAATTAACTAGAGCTTTTAGGAGAGTTGGTTGTG GATGTGGTAGTAGTAGTCTCTTTATTTGCCAACCCTTGTGATGGGTTGGTTCGGGTGAAAACTGAAAAGCCATGATGCTA TTCTGATTTTGATTGTTCATATTTTTTGTGAATGTAAATGTGCAAATGAAAGTATTAGTGACAGAGTTTTAGGCATCCTT GCCTATTTACATGGGGGAGAGTGTTCTCGCAATCCCGCAAATAGTATTGGTGCTTCTCTTAAGTGGAAACTAAACCAACT GTATTATCACGGTTCAAGAAAATTGATTGTGTTTAGTAGTTTTTCGATTGATCCTCTATCAGTTATGTTAGGAACTTGTT GCCTTTAGGCTTTGGGGCATTTTGTTATTTATTCACACACTAGTTGCAAAGATGCTTCGTTATAACTTTTCTTTCCAATT GCACTGAGAATGGAAGTCCATTTGGATTAATTGATTTAATTCCTAAGTGCTTCTTATCTAAGCTGCCTGACAAATGGTCA AATGAGGATCTCACCTTTCAAACAAGATATATGTTATTAGTGTTAAGATTTTCCAAAATTTAGTCTTTTCTTTTCTTGAT ACTTTTGTTTTTTGCTGGAACCAACAGATATTTATTGACCATTTGAAAATTTCATGTCTTTTGACTTTCTGACTACCATT TTCACTTGTTTTATCCAGTCTTTCCAGTCCAGACATGGGAAAGCTTATCTCTTCAGTAAGGTGTAAGTTTTCCTTGATAT AGGCACCTTATGATTTTGTGATTACTGAAAATTAACCAAAGTGTTAAGTAGAACTCTGCTTGTTTATTTTTTGCTCATGG CTTCTTGCTTCTGGATCTCTAAAGCTCTAGCCACATTATATTTTACAGTAAGTTCTGTTCAGGGATGTAATTTAAATCGT TTATGCTTTAACAGAGTGAATGTTTCCCTTGGAGAAAAAGAGGATAGGAATATGCTCACTGGGATACATACTGTGGCTGA CATTTTCTGTGTGGGTTGTGGATCAATTGTGGGTTGGACATACGTAAGATTTGTATCAGTGCTATAAGAATTTTTTTTTT CTGGGACAAAACTTAGATACAGTTCCATATAAGCTGTTTTTAGACATTATTGTCCAATTACAACATGAAGGTGATAATCA CATTAATAAATATTAACAAAGTGGGTGGCTGAGTTTTTCATTGGCCAACAGCACAAACAATACCTATAGTACTACTGCAG CTAAGTTTTTTCCCCATTTTCTGTTTCTATATAGCATTAAATTTCCCTACTGGTTTCTTTCAGGAAACTGCTCATGAAAA AAGCCAGAAGTACAAGGAAGGAAAATCTGTTATTGAACGGTCAGTAGAAATGTTTTGTGAGGAAACATTGTTATAACATG TCTGGATCAACTTCTCTTTTCTCAGAATCAATTCTGAAACCGAGAAGCTACCCACAAAAGCTTACTCCCAGAAATGATTC TGGCTTTAGAATCAATTGTAGAAGGATTTCCATACATGCACTTAATCTGAGAAGTCATTTTGAATTTTAAGTATGTGGTG GATTAGATGAGTTTTTACTTTTGACCAGGTTCAAGGTGTCAGGTCCTGATGGCAGCAATTATTGGGTGAGCCGTGAAGCT CATATTAGTGGAAGTGATGCAGATGATGTTTAGTCATCTCAATATTACCAATTGAATTGTACATTCCTTAGAACCCCTCC CTATTTCCTTGTCCAGTGAATGTGGATATATAAGGGCAACTTATCTAAATCAGCATTTTGCCCAAAAGACAAATTAACTA CATTTGATAGGTGATTCTGATGTAAAACTAACTTATGTTCAAACTTCTAATCAATTCTGGTTTTCATTTTGTTATTACTG ATCTTCATTCTAGTTTACCATTTGCTAGGTGCTTGCATATCTTGTAATCTCATATTTGTCGTAGTCTTCTCATTGAGATT TTTTTAAAGCTCAAATGTAAATGAAATCTTGAATAGGACC
CDS sequence (LotjaGi1g1v0078000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAGGTTGTTTGCGGTTCATCTGGAAGGGAGAGTCTATAGCTGTAAACACTGTCGGACCCATCTTGCTCTTTGTGA AGACATCGTCTCCAAGTCTTTCCAGTCCAGACATGGGAAAGCTTATCTCTTCAGTAAGGTAGTGAATGTTTCCCTTGGAG AAAAAGAGGATAGGAATATGCTCACTGGGATACATACTGTGGCTGACATTTTCTGTGTGGGTTGTGGATCAATTGTGGGT TGGACATACGAAACTGCTCATGAAAAAAGCCAGAAGTACAAGGAAGGAAAATCTGTTATTGAACGGTTCAAGGTGTCAGG TCCTGATGGCAGCAATTATTGGGTGAGCCGTGAAGCTCATATTAGTGGAAGTGATGCAGATGATGTTTAG
Protein sequence (LotjaGi1g1v0078000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRLFAVHLEGRVYSCKHCRTHLALCEDIVSKSFQSRHGKAYLFSKVVNVSLGEKEDRNMLTGIHTVADIFCVGCGSIVG WTYETAHEKSQKYKEGKSVIERFKVSGPDGSNYWVSREAHISGSDADDV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 128 | 128 | 7.4E-80 | – | |
| PANTHER | 1 | 128 | 128 | 7.4E-80 | ||
| ProSiteProfiles | 12 | 109 | 98 | 50.393 | ||
| Pfam | 13 | 104 | 92 | 1.6E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0078000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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