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LotjaGi1g1v0080200.1

Overview

Field Value
Gene ID LotjaGi1g1v0080200
Transcript ID LotjaGi1g1v0080200.1
Lotus japonicus genome version Gifu v1.2
Description Wuschel-related homeobox protein; TAIR: AT3G11260.1 WUSCHEL related homeobox 5; Swiss-Prot: sp|Q8H1D2|WOX5_ARATH WUSCHEL-related homeobox 5; TrEMBL-Plants: tr|G7KBY3|G7KBY3_MEDTR Wuschel-related homeobox protein; Found in the gene: LotjaGi1g1v0080200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:11582134..11584169) extracted from Lotus japonicus Gifu genome v1.2.

GTCCCTAAATTCAAAGCAGACAGAACGTAGAGACAAAGATCATGACATTAGATTGAGACATTAATCATGGTATTATATAT ATGTACACGGATTGGAATCTTCATGGTTCAGAGAAGCTCAGAGCTAAAGTTCTCACTTCAGAGGCAGAGAATCATTGATC AGAGGAACTAGCTAGAAGTGAAACATGGAAGAGGGAAACATGTCAGGCTTTTGCATCAGATCAGGAAGCTGTACTGTCCG AGGTAAAAGTGGCATCAGCAGTGGCACCAAGTGTGGGCGTTGGAACCCCACCACAGAACAGGTTAAACTTCTCACTGAAC TCTTCAGGGCTGGTCTCAGAACCCCAAGCACTGATCAGATTCAGAAGATCTCCAATCAGCTGAGTTTCTATGGTAAGATA GAGAGCAAGAACGTGTTCTATTGGTTTCAGAATCACAAGGCCAGGGAAAGACAGAAACGCCGCAAAGTCTCATATGATGA GAAGGATGTTGTAATTCGTAGAGATAACTTCATGAATGCTTCTCCACTAAGTAAGTACTACTGTCATTTGCATGTTTGTG TTCACATTCACATCTTCCAAAATCAATTGTGCCACAAATGCTACTAGGATTAGTAGCTTCTCTCAGAATCATACTTTCGT CTAATATGAAAATATGTTGTGTATCTAAACATACACATAAATCTAATCAAGTGCATGTGTTAGGATCCGAAAAGGAACCA GCCCTATTGAAGAGGAACCAGCCTCTTGGTTCTGTAGAGGACCCAGTCTCTCAGTTCCTATTTATCCTTTTTTATTTCAA TAATATCAGTTCTTATTCAGAAAATACAAAAATATTAGCCTTTATTATATTTTTCTCTTATGTTTCACCACGTTAGGATT TTCGGATCCTAACAATTGGTCCGACCTACCGGATCGAATCGTTGGCGGGATTTCGATCCGGTAGGTCGGACCAATTGTTA GGATCCGAAAATCCTAACGTGGTGAAACATAAGAGAAAAATATAATAAAGGCTAATATTTTTGTATTTTCTGAATAAGAA CTGATATTATTGAAATAAAAAAGAATAAATAGGAACTGAGAGACTGAGTCCTCTACAGAACCGAGGCTGGTTCCTCTTCA ATAGGGCTGGTTCCCTTTACAAAACTCAATAATTTAATCCATAACTCTAACCTAAAGAGGGCACTCCTATTTATAATAAC TAATCCTAATATCAATAACTTAATCCCTAAGAAATACATAAGATATACTACTAGAATAAGAGATAACATCCTAATATAAA AGATACTATAAAGATAGATTCCTAAATTAAAATAAATTAAATCCTAATATAATTAATCCTAACAGCATGCATGTTTGGGA ATTTTCTACAATTAATTCTGAAGTATTTGAGAAATTTATGTAAGTAGTTTTTTTAAGTGTCATAATTCATTCTGAGTAAA GAGAATCTCATTTGAAAGTGCCAAGAGACCCTTTGAAATTTCTATTTTTCATTAGCTTTTAATGATCTAATGATGTAAAT ATGTGTGTTTTTGACACTTTTCAAAGGATCAGGTATTGCTGAGATGTATCAAGTTTCAGAGCCTGACAGGATGATTGAGA CACTTCCACTTTTTCCCTTGAATTCCTTTGGTGAAACAGAGTCAGAGAAGGTGAGGGTGCATCCAAATGAAGGCAGGGGT AATGCAATGTTTTCATACACAATGGCAGAACAGATGGAGCACCCACCATTAGACCTGCGATTGAGCTTTCTGTGAGGAGG AGGAGATTTTTTACTTATTGTTGTTACTTAGTGAAATTAATTAGGTTTAGCATAAAAAGAAAATGTTTAGGGTTTGTATC ATGTAACTGTTAAAAATTACAAACTATGTAACTTTAGATTAATATTTAGTGATCATGTAATATTGACTTTATCCCTTAGG CAAGTGGTTTAAAATTCGTATTTCAAACTCTTGCGAGTGAAAAAAACTCTTTAGTCAATCTTCTACCTCTCAATGTGTTA ATAACAGGATGGGAGATTTAATCTCACGACTATTAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0080200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGAGGGAAACATGTCAGGCTTTTGCATCAGATCAGGAAGCTGTACTGTCCGAGGTAAAAGTGGCATCAGCAGTGG CACCAAGTGTGGGCGTTGGAACCCCACCACAGAACAGGTTAAACTTCTCACTGAACTCTTCAGGGCTGGTCTCAGAACCC CAAGCACTGATCAGATTCAGAAGATCTCCAATCAGCTGAGTTTCTATGGTAAGATAGAGAGCAAGAACGTGTTCTATTGG TTTCAGAATCACAAGGCCAGGGAAAGACAGAAACGCCGCAAAGTCTCATATGATGAGAAGGATGTTGTAATTCGTAGAGA TAACTTCATGAATGCTTCTCCACTAAGATCAGGTATTGCTGAGATGTATCAAGTTTCAGAGCCTGACAGGATGATTGAGA CACTTCCACTTTTTCCCTTGAATTCCTTTGGTGAAACAGAGTCAGAGAAGGTGAGGGTGCATCCAAATGAAGGCAGGGGT AATGCAATGTTTTCATACACAATGGCAGAACAGATGGAGCACCCACCATTAGACCTGCGATTGAGCTTTCTGTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0080200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEEGNMSGFCIRSGSCTVRGKSGISSGTKCGRWNPTTEQVKLLTELFRAGLRTPSTDQIQKISNQLSFYGKIESKNVFYW FQNHKARERQKRRKVSYDEKDVVIRRDNFMNASPLRSGIAEMYQVSEPDRMIETLPLFPLNSFGETESEKVRVHPNEGRG NAMFSYTMAEQMEHPPLDLRLSFL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR45940
1 184 184 3.4E-88 –
PANTHER
PTHR45940:SF15
1 184 184 3.4E-88 –
ProSiteProfiles
PS50071
26 91 66 11.094
IPR001356
SMART
SM00389
28 95 68 7.5E-4
IPR001356
Gene3D
G3DSA:1.10.10.60
29 97 69 6.3E-9 –
Pfam
PF00046
30 90 61 7.1E-18
IPR001356
SUPERFAMILY
SSF46689
31 94 64 1.15E-11
IPR009057
CDD
cd00086
32 92 61 4.76323E-5
IPR001356

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0080200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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