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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0083200 |
| Transcript ID | LotjaGi1g1v0083200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | lipase, putative (DUF620); TAIR: AT5G05840.1 replication factor C subunit, putative (DUF620); Swiss-Prot: sp|B4U9Q9|MRAY_HYDS0 Phospho-N-acetylmuramoyl-pentapeptide-transferase; TrEMBL-Plants: tr|C6TJ39|C6TJ39_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0083200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:11965279..11969702) extracted from Lotus japonicus Gifu genome v1.2.
CCTAGAACTCGTATATGTCGAATGAATGTGGACACTATGGGTTAAAAAATAAACCTAGTTTAATATTGACTATAAGTTAC AAATGGTGTGAGAGAGGCGTGCGAACACGATTATATAGTTTAGATGTTGGTGATCTTTTCCCAAAGTTCCACCCTCAATT CAATATCCTCTCCCTCCCTTTCAATTCAAGACTCCAATCCAATCCCTCTTCTTCCCCTTCTCTACTCTCTAAATTCATGT CTAAAAGCTATCAATTTCTAAGGTAGTTGTTATTAAATCAACCAAAACACACACATACCCTTAATTAACAAACTCTGTTA ATTATCTATCTGCTTAATCTCTTGTGTTCTGTTCTCCTCTGTTTCTTCCTTCCTCTGTGATATTGATATCATGAAGAAGC TCTGTCCCAACCTTGATCGCGAGGACGCGCTCGAAACGGTGCTGGAAGTCCCCATACCGGAGGAGATTTTCACCACCAAA ACCGGAACCACCACCAGAGCTTGGCAAAACATGAAGTCATGGATGATGAAGCCAAACATTGAATCCAGATCATCATCACT CTTTGGAGATCGAATCACAGACATCCAGTTATTACTCGGCGTTATTGGAGCACCATTGATTCCTATCCCTACCTCAGAGT TCCAGCAACAACCCTTCATCCATGGCAGCATCAAAACTCAAAACATTGTAAGTAATAGCAAAACAAGCAAAAACATGACA ACTGTTTTTTGTTTTTCTTAGAAGAGATTGATCAAAATTGAATGACCCAGTTTTGAATGATTTCTGAAGTTGTTGTTTAT GTTGTTTTTGGTTGTGAAGGAGGCTTCAATGGCGAGATACATAGTGAAACAGTACGTGGCGGCGGTGGGAGGAGAGGGTG CTTTGAATTCGGTGGAAAGCATGTGTGCGACGGGTCAGGTGAGGATAGGGACCTCAGAGTTCACGACAGGGGAATGTGGT GTGAAGAGCAAGAAGAAGATGGATAAGGAGGTGCAGATGGGAGGGTTTGTGCTATGGCAGAAGAGGCCGGAGCTGTGGTG CTTGGAGCTGGTGGTTTCTGGATACAAGATCAGTGCAGGGAGTGATGGTAAAGTGGCTTGGAGACAAACCCCTTGGCACC ATTCTCATGCTTCAAAAGGCCCACCTCGACCACTCAGGCGTTTGCTTCAGGTAAATTCACTTCACAATTCACCAACTCCT TTTACCCTCAATTCACTTAAACAAGTAGTTAGGTCAAAAGTTCAATTATTGGTGAGTTTTTACCATAATCACACTTGAGT CAGAATTGCAAATACGATTTGAATTAGGGGTGTAATAGGGCTTTAACACAAGGTTTAAAATTAGGGGTGACGTTTGTCGC GACATCGCAGAATTGCGGACAAATGCGAGTTGATGCGGATGCAATTACGATCACAATGCTGATGCATAGACTCCAAAACT TATTGCTTAGGGTGTAATTGAGTCCGTAGTCAAATCACAATTTAATATTGCTGACAAGTGCGGTTATGATGCCCTTATGG TGCCTGCAACTCAAAACTGTGCTTCCAAAGTCTAACCACGCCTCTTTGTTTAATTAATATTTGTTAAGAAATTAGTAAAG AGAGAGATAAGAAGAGAGGAGGAAGAGAACAATAGTGTGAATCAGGAGTAATTTACTAGGTGCGGTCTTCATGTATATAT AACATTAGGTAAGAGAGAGTAGTACACTGTAGTACAAGTGTACAATATGGTCCAAGTATACATGTGCTTGACTCCATGAT GGTCATCCATTTTATAACAGTTCTCCTTAATGACGAATGTGTCTCATTAAAACCTTACTAGTAAAATTCCTATGGGATAA AAACCTAGTGAAGGAAAAAAAGTACAACATTCTAAAGTCTATTAATAGATTGTACTATTTATCCTTCACTAGATTTTATA TAGGGTTTTTAGTAGTAAGGTTTTAATGAGGCATATTCTTAAGAGATGACTAGTGTTATAAAATGGATGATAATCATGGG TCAGACCCTGTATGCTTGGATCACACTGTACACTTGTACTACAGTCTCCTCTATTAAATCTAATGTTATATATAGATGGA GGCTGCAACACTATTGTTCTCTTCCTCATCTCTCTTTACTAATTTCTTAACAATATTAATATTAGTTTCTTAATATGATT TCTTCTATTTGCCTCTAGTGTGTATCTGAATTGAATGTCTTTCTATATAAGCTCATGTTAACTCTAGAATTCACATTAGC TCCAACCATTCTTTCAGATTTCAGGTTTCACACACTTTGGTCTGACTAGCTCTATGATGTGTTCCCATTTCACACACTTC CTCCATAAAAGCGAGTCTGGATCTTGTCACCCTCCCTCATCAAACACTGCCTAACCGAATCCCAAGTTGCTAAATAAAAC CAAGTGCTTTCCATTTTCAAAAGAACCAGATAAAACAATGTTAATTTTTAAATCAAGTAAAGGGTCAATTTACATTCCTA ATTCTTTATCATAGAAATAATCTTAGCCCTCCAACTGTGTGAATGTCTATATTTGACGAAAAAAGTCAGCAATTTAATAA GTGAAGCCGTGATGCAAGGAAATTCCCTTCTCATTAAGTATTCCAAAAGCTAAAAGTCTAAAACTGGAATTTTCCAATTA AGTAGCTGTGATTGCCAAATGTCAACAACATGCGTCATCAATTCAATTCCTCAGTGCATGACAACCTTAGTTCCATTTTT CAAAATATCTTTTTTACTTTTCTTTTTTGCTATCCTCCAAAGCCTTTTAATAGGTCATAGTGATGTGGATACAGGCTTCT TTTGGCCATTGCATTGTGATGAAGGTTCACAATCATATAAAGATATCATCTTTTCTTTATCACTATAGAAAAACACTCAT ATATATATATTGACTGCAATAATGTTAAAGTGTCACATTGATTAAAGATTTGATCAACAATTCAACATGATTATTATAAA GGTGGAACAATCTTCATATTTTAGCTTCTAGAGTTACCTTGTTTTGCACCATGAGCTACTAGCAATCTAAACACACTATC TACATATTTGGATACACAGTAAAAAATTACGATGAGCTAAAATTACCTTTCATATTTTAGCTCCTGGAGTTACCGTGTTT TGCACTATGAACTACTGGCAATCCAAACATACTATGTACATGTTTGTATTCAGAGTAAAAAATTATGATGAGTTAAAATT ACTATCCCCAGAATAACTTAATTTTCTATGTGATTTTGTCTTTCTATAGTTTTCCACTGTGAATTTGAACATGCACTATT ACTATGTCCACATTTTGATAATGAAATTTACACATTATTCTGCCAATTCTACATATCTCTGATCTGATAGTTAATGCCTT TCAAAACAGGGTCTTGATCCAAGGTTGACGGCCAACCTCTTCAACAACTCAACATGCACAGGGGAGAAGACAGTGAACAA CGAAGAATGCTTCGTCCTAAAACTCGAAGCAGAGTCGAATTCACTTCGAGCTAGAAGCAGCAGCAACGTAGAGATCATCA GCCACACAGTGTTAGGCTACTTCAGCCAGAGAACAGGGCTTCTAGTCCAGTTAGAAGATTCCCACTTGCTCAAACTCAAA TCCCCTGAAAGTGACGATACAATTTTCTGGGAAACCAACACTGAGTCTTCAATACAAGATTACAGGACAGTGGATGGTAT CAGCATAGCACACTCCGGGGTGACTTGGGTTTCGTTGTCGAGGTTCGGCGAAGGAGGCCCTGTTGAGAGCCATTCGAGAA CTAGAGTAAAAGAGGTTTGGCAAATTGAAGAGGTGGATTTTAACATCAAAGGGTTGTCCATTGATTGCTTCTTGCCTCCT AGTGATTTGAAGAAAGAGGAAGAAAAAGGGGTGGTGGCAGCAGAGTGTGCTTCTTTAAGATTACAAAATAAGATTAGATC TTCTTCTGTCAAGATTAGTGCTTCCAAAGTAGCTGCTATTAATTTGGATGATTCGTAATGTGATTGATGCTTAAGATGAA TTTATTGCTTGCTAATGTGTAGTGCTAGTAACTAGTAAAGGTGCAAAAATACTTTTATACATTTCAAAGCTGCAAACCAT TAACTTAAGACCAGAGTTTTAAATTGTTGACGTGATTGTGGTTGCATGCATTGTGAAATTAAAAACAAATGAGGGTTTAT GTGGACGTAATTGCGAGGTCTCGATGCTAATGCGAGGACTCCAAAGCTTGTTACGTTGCAGCTGCAATAGCTGTTGTGGA CCGCAGTATGAAACACTGCTTAAGATCATAAATATTCTTATTCTATCGGTAGTGGAAAAAGCATAACAATTTCATAAACT ACACCTTATAATTTCTTTGCAAGTGATTTTAAAGCGACCAACCGGAGAGCCACATAAGCTCTCAAAGCCAAAGCTTAATG AAGATATATACATTACACTTCATA
CDS sequence (LotjaGi1g1v0083200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAAGCTCTGTCCCAACCTTGATCGCGAGGACGCGCTCGAAACGGTGCTGGAAGTCCCCATACCGGAGGAGATTTT CACCACCAAAACCGGAACCACCACCAGAGCTTGGCAAAACATGAAGTCATGGATGATGAAGCCAAACATTGAATCCAGAT CATCATCACTCTTTGGAGATCGAATCACAGACATCCAGTTATTACTCGGCGTTATTGGAGCACCATTGATTCCTATCCCT ACCTCAGAGTTCCAGCAACAACCCTTCATCCATGGCAGCATCAAAACTCAAAACATTGAGGCTTCAATGGCGAGATACAT AGTGAAACAGTACGTGGCGGCGGTGGGAGGAGAGGGTGCTTTGAATTCGGTGGAAAGCATGTGTGCGACGGGTCAGGTGA GGATAGGGACCTCAGAGTTCACGACAGGGGAATGTGGTGTGAAGAGCAAGAAGAAGATGGATAAGGAGGTGCAGATGGGA GGGTTTGTGCTATGGCAGAAGAGGCCGGAGCTGTGGTGCTTGGAGCTGGTGGTTTCTGGATACAAGATCAGTGCAGGGAG TGATGGTAAAGTGGCTTGGAGACAAACCCCTTGGCACCATTCTCATGCTTCAAAAGGCCCACCTCGACCACTCAGGCGTT TGCTTCAGGGTCTTGATCCAAGGTTGACGGCCAACCTCTTCAACAACTCAACATGCACAGGGGAGAAGACAGTGAACAAC GAAGAATGCTTCGTCCTAAAACTCGAAGCAGAGTCGAATTCACTTCGAGCTAGAAGCAGCAGCAACGTAGAGATCATCAG CCACACAGTGTTAGGCTACTTCAGCCAGAGAACAGGGCTTCTAGTCCAGTTAGAAGATTCCCACTTGCTCAAACTCAAAT CCCCTGAAAGTGACGATACAATTTTCTGGGAAACCAACACTGAGTCTTCAATACAAGATTACAGGACAGTGGATGGTATC AGCATAGCACACTCCGGGGTGACTTGGGTTTCGTTGTCGAGGTTCGGCGAAGGAGGCCCTGTTGAGAGCCATTCGAGAAC TAGAGTAAAAGAGGTTTGGCAAATTGAAGAGGTGGATTTTAACATCAAAGGGTTGTCCATTGATTGCTTCTTGCCTCCTA GTGATTTGAAGAAAGAGGAAGAAAAAGGGGTGGTGGCAGCAGAGTGTGCTTCTTTAAGATTACAAAATAAGATTAGATCT TCTTCTGTCAAGATTAGTGCTTCCAAAGTAGCTGCTATTAATTTGGATGATTCGTAA
Protein sequence (LotjaGi1g1v0083200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKKLCPNLDREDALETVLEVPIPEEIFTTKTGTTTRAWQNMKSWMMKPNIESRSSSLFGDRITDIQLLLGVIGAPLIPIP TSEFQQQPFIHGSIKTQNIEASMARYIVKQYVAAVGGEGALNSVESMCATGQVRIGTSEFTTGECGVKSKKKMDKEVQMG GFVLWQKRPELWCLELVVSGYKISAGSDGKVAWRQTPWHHSHASKGPPRPLRRLLQGLDPRLTANLFNNSTCTGEKTVNN EECFVLKLEAESNSLRARSSSNVEIISHTVLGYFSQRTGLLVQLEDSHLLKLKSPESDDTIFWETNTESSIQDYRTVDGI SIAHSGVTWVSLSRFGEGGPVESHSRTRVKEVWQIEEVDFNIKGLSIDCFLPPSDLKKEEEKGVVAAECASLRLQNKIRS SSVKISASKVAAINLDDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 413 | 413 | 1.6E-218 | – | |
| PANTHER | 1 | 413 | 413 | 1.6E-218 | ||
| Pfam | 127 | 373 | 247 | 6.9E-115 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0083200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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