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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0088200 |
| Transcript ID | LotjaGi1g1v0088200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glycerol-3-phosphate acyltransferase; TAIR: AT3G11430.1 glycerol-3-phosphate acyltransferase 5; Swiss-Prot: sp|Q9CAY3|GPAT5_ARATH Glycerol-3-phosphate acyltransferase 5; TrEMBL-Plants: tr|G7KGS4|G7KGS4_MEDTR Glycerol-3-phosphate acyltransferase; Found in the gene: LotjaGi1g1v0088200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:12831759..12834207) extracted from Lotus japonicus Gifu genome v1.2.
AAGAGACAAGCAATCGAATTAGTAGTGAAGGTAGTTGAAAAACTGATAAACTGCCTTATAGTTATAGCATGCCAAACATT AGATAAGACCGTCCACATAATTACACCCCATTCCCTTTCCTTAATCTCATAACCATAAAACGTACCCAAATATCATAACA TATCATCATATCCTTTAAAACGATCGAGTACTGAAACATTAGAAACCTCAAAAATTCCAAAACATAGAACATAATAGCAA AACTTCAAACATTTTCAAATGGAGTCTGTTGTGTCTGAGCTAGAAGGCACGCTTCTGAAGAACTCGGACACCTTCTCCTA CTTCATGCTTGTGGCGTTTGAAGCGTCCGGTTTGGTTCGGTTCGTTTTGTTGTTGCTCTTATGGCCGGTGATTCAGTTGC TAGACATGGTTGGCATGGGTGACTTGGGGCTGAAGCTCATGATCTTTGTGGCCGTGGCTGGGGTTCCACGAAACGAGATT GAATCGGTGGCTCGGGCGGTTCTGCCCAAGTTTTACTTTGATGATCTTGACATGGAAGCGTGGAAGGTGTTCAGCTCGTG TGACAAGCGTGTTGTGGTCACCAAAATACCGCGGATCATGGTGGAGATGTTCGTGAAGGAGCACTTGCGGGCCGATGAGG TGATTGGGAGTGAACTCTGCTTCAATAGGTTTGGACTTGCTACTGGGATGGTTCAGGGTGGCTCCATTAGCAACGTTTCT GAAAGAGTTGCAAAGGTTTTCAACAATGAAGGACCTACTTTGGGTATGTCATCAAGGCCTAGTGATGCTTCGAGCTGTAC ATCCAGCTTCATCCAACTTTGCAAGGTACGTACGCACGTTTATGATAATTTATGATTCACCAAGTTTCCATTTAAGAGAC ATTAATCTAGAGTTCTTGATTGCAAGTGTTACACCGCATTGATTCACATAAGAATTATTATTGTATATTTGATTACAATT TAAACCTCAATTTGGCACATGTAAGAAATCTCATATGAATAGAGGATGAACAGAAGTTAGATGGAGAGATAATAAAGAAA TAATGCATGAATTAATACTCTTTTCTAAATACGTGTACCACCTACACTATATACACCCGTCAGACAACTTTTAATTTTTT TCTCTATTTTTTTTAATATATATATTGCATCATATATCATTTATCTCTCATTTTTTGGTCATCTATTGTTTTTAAATAAA CATGTTCTAACTATATCATTTACATGCAGGAACAAATGCAACCACCATTTACAACTGGCCAAAAGTACAACCACCACATG CTCCCGCAGCCAAACCCAGTGATCTTCCACGACGGCCGCCTCGTCAAGCGGCCGACACCCGCAACCTCCCTGCTAATCAT CCTCTGGATGCCCTTAGGCATAGTACTCGCCATAATCCGCCTCAGTGTCGGCTGCATCCTACCATTTTGGATCATCCCTC ACATGTCAAGGCTTTTCAGCTGCAAAGTTGTCGTCAGAGGCAAGCCACCGCCCCCTCCTTCTCGCGGCAGCTCTGGTGTC CTCTTCGTCTGTACCCACCGCACCCTCATGGACCCCGTCATCCTTGCCTCCGTGCTCGGCCGTAAAGTCCCCGCTGTCAC CTACTCTATTTCACGCATATCAGAGATCCTCTCTCCAATCCCCACCGTGAGGCTAACGAGAAAGCGAAATGTAGACGCCG AGAGAATCAAAGAAGAACTCTCCAAAGGAGATCTCGCGGTGTGCCCTGAAGGAACCACGTGTCGCGAGCCTTTCCTTTTG AGGTTCAGTGCGCTCTTTGCAGAGCTTACTGACCGAATAGTCCCGGTGGCTATGAACTACCGGGTGGGATTCTTCCACGC CACCACTGCAAGGGGATGGAAGGGTCTTGATGCAGTTTTCTTTTTCATGAACCCGAGGCCGGTTTATGAGGTGACTTTCC TGAACCAGTTGCCGGTTGAGGCCACATGCTCGTCGGGGAAGAGTCCACATGACGTGGCGAACTATGTGCAGAGGATACTG GCAGCTACTTTAGGGTTTGAGTGCACCAACTTCACAAGGAAAGACAAGTATAGGGTGTTGGCTGGGAATGACGGCATCGT ATCTTGCACTTCCTTCCTTGATCGGGTAATGAAGGTGGTGAGCACTTTCAAGCCATTTTTACAGTGACATTGTGTAAACA TAAGAAAAATGGAAAGAAAAAAACGATAATTGTTTTATTTTATGATTTGTTTCTATTGGTAGCAGCTTTGTGTATTGAAG AATTATCTTAATTTTTTTTTGTAAATCTTTTGGTTTTTTCTATAGATTGATTTTTTTTATTTGACAGATGTCTCTATCCA TTAGAGAAGTGATTGTATGTTGCTTACCTTTAGACGGTCTAGGCCAACACATTTAGTTATGACTTATTATTTATTTCTCG GGGCATTCACTTTAATAAATTCAATAAAGTATACATCACGAACATGTGT
CDS sequence (LotjaGi1g1v0088200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTCTGTTGTGTCTGAGCTAGAAGGCACGCTTCTGAAGAACTCGGACACCTTCTCCTACTTCATGCTTGTGGCGTT TGAAGCGTCCGGTTTGGTTCGGTTCGTTTTGTTGTTGCTCTTATGGCCGGTGATTCAGTTGCTAGACATGGTTGGCATGG GTGACTTGGGGCTGAAGCTCATGATCTTTGTGGCCGTGGCTGGGGTTCCACGAAACGAGATTGAATCGGTGGCTCGGGCG GTTCTGCCCAAGTTTTACTTTGATGATCTTGACATGGAAGCGTGGAAGGTGTTCAGCTCGTGTGACAAGCGTGTTGTGGT CACCAAAATACCGCGGATCATGGTGGAGATGTTCGTGAAGGAGCACTTGCGGGCCGATGAGGTGATTGGGAGTGAACTCT GCTTCAATAGGTTTGGACTTGCTACTGGGATGGTTCAGGGTGGCTCCATTAGCAACGTTTCTGAAAGAGTTGCAAAGGTT TTCAACAATGAAGGACCTACTTTGGGTATGTCATCAAGGCCTAGTGATGCTTCGAGCTGTACATCCAGCTTCATCCAACT TTGCAAGGAACAAATGCAACCACCATTTACAACTGGCCAAAAGTACAACCACCACATGCTCCCGCAGCCAAACCCAGTGA TCTTCCACGACGGCCGCCTCGTCAAGCGGCCGACACCCGCAACCTCCCTGCTAATCATCCTCTGGATGCCCTTAGGCATA GTACTCGCCATAATCCGCCTCAGTGTCGGCTGCATCCTACCATTTTGGATCATCCCTCACATGTCAAGGCTTTTCAGCTG CAAAGTTGTCGTCAGAGGCAAGCCACCGCCCCCTCCTTCTCGCGGCAGCTCTGGTGTCCTCTTCGTCTGTACCCACCGCA CCCTCATGGACCCCGTCATCCTTGCCTCCGTGCTCGGCCGTAAAGTCCCCGCTGTCACCTACTCTATTTCACGCATATCA GAGATCCTCTCTCCAATCCCCACCGTGAGGCTAACGAGAAAGCGAAATGTAGACGCCGAGAGAATCAAAGAAGAACTCTC CAAAGGAGATCTCGCGGTGTGCCCTGAAGGAACCACGTGTCGCGAGCCTTTCCTTTTGAGGTTCAGTGCGCTCTTTGCAG AGCTTACTGACCGAATAGTCCCGGTGGCTATGAACTACCGGGTGGGATTCTTCCACGCCACCACTGCAAGGGGATGGAAG GGTCTTGATGCAGTTTTCTTTTTCATGAACCCGAGGCCGGTTTATGAGGTGACTTTCCTGAACCAGTTGCCGGTTGAGGC CACATGCTCGTCGGGGAAGAGTCCACATGACGTGGCGAACTATGTGCAGAGGATACTGGCAGCTACTTTAGGGTTTGAGT GCACCAACTTCACAAGGAAAGACAAGTATAGGGTGTTGGCTGGGAATGACGGCATCGTATCTTGCACTTCCTTCCTTGAT CGGGTAATGAAGGTGGTGAGCACTTTCAAGCCATTTTTACAGTGA
Protein sequence (LotjaGi1g1v0088200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESVVSELEGTLLKNSDTFSYFMLVAFEASGLVRFVLLLLLWPVIQLLDMVGMGDLGLKLMIFVAVAGVPRNEIESVARA VLPKFYFDDLDMEAWKVFSSCDKRVVVTKIPRIMVEMFVKEHLRADEVIGSELCFNRFGLATGMVQGGSISNVSERVAKV FNNEGPTLGMSSRPSDASSCTSSFIQLCKEQMQPPFTTGQKYNHHMLPQPNPVIFHDGRLVKRPTPATSLLIILWMPLGI VLAIIRLSVGCILPFWIIPHMSRLFSCKVVVRGKPPPPPSRGSSGVLFVCTHRTLMDPVILASVLGRKVPAVTYSISRIS EILSPIPTVRLTRKRNVDAERIKEELSKGDLAVCPEGTTCREPFLLRFSALFAELTDRIVPVAMNYRVGFFHATTARGWK GLDAVFFFMNPRPVYEVTFLNQLPVEATCSSGKSPHDVANYVQRILAATLGFECTNFTRKDKYRVLAGNDGIVSCTSFLD RVMKVVSTFKPFLQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| PANTHER | 2 | 481 | 480 | 2.8E-261 | – | |
| PANTHER | 2 | 481 | 480 | 2.8E-261 | – | |
| TMHMM | 20 | 42 | 23 | - | – | |
| Phobius | 21 | 45 | 25 | - | – | |
| Phobius | 46 | 50 | 5 | - | – | |
| Phobius | 51 | 69 | 19 | - | – | |
| Phobius | 70 | 228 | 159 | - | – | |
| SUPERFAMILY | 200 | 473 | 274 | 7.45E-30 | – | |
| Phobius | 229 | 257 | 29 | - | – | |
| TMHMM | 229 | 258 | 30 | - | – | |
| Phobius | 258 | 494 | 237 | - | – | |
| Pfam | 283 | 375 | 93 | 8.2E-5 | ||
| CDD | 286 | 447 | 162 | 3.99588E-18 | – | |
| SMART | 286 | 387 | 102 | 3.5E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transferase activity, transferring acyl groups | Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). |
Expression pattern of LotjaGi1g1v0088200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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