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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0088300 |
| Transcript ID | LotjaGi1g1v0088300.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein family; TAIR: AT4G26090.1 NB-ARC domain-containing disease resistance protein; Swiss-Prot: sp|Q42484|RPS2_ARATH Disease resistance protein RPS2; TrEMBL-Plants: tr|G7KHA8|G7KHA8_MEDTR NB-ARC domain disease resistance protein; Found in the gene: LotjaGi1g1v0088300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:12844696..12847475) extracted from Lotus japonicus Gifu genome v1.2.
GGATGCTGGTGAAGGGGAAACAAGTATGACAATTCAGAGAAAGTTAATATCAGTTTGTATTGAGAACGGTTCCAAAATTG AAGGCATTTTTCATCTAAAGGGGGTTCCAGTCAATGGACAACAAGTGACCTCATGGTTAGAAGACCTAAAATTGGCTAAT TTACCAGAGCTAATGCACATATGGATGGGTGTCAAACATCTTGTGAGGCTTCAGCATCTTCATAAAGTGCACATTTTCAA TTGTCCAAAACTAAAGTTTGTCTTCTCTTCCTCTGTCTTGAGAACCCTACCTTTATTGAAGATCCTAGTGGTAGAACAAT GTGAGGAATTGGAACAAATCATCGAGGACGATGAAGAAAATGACAATGTCCCAAATCCTCAATCCCCAAAAGCATGCTTC TCACAGTTAAAATTCCTTCTTGTCACGCACTGCAACAACTTGAAGCATCTCATGTACATGTCCACACCCCACCACAAGTT TCCAGAACTTGAGTATCTGATCCTAAATCAAGACTCTCATCTAGTGCAAGTGTTTGAGGCTGAACCAGGTGTGAAACAAG GGAAGGTGGAAACTTTGTTTCCAAAACTGAAACATGTAATGTTAACACAACTACCAAACCTCAATAACATATGTCATGGG ATTGAGTTTCAGACCCTTCCTAATCTTCTTATCCACAATTGTCCAAGACTCTCATTTACTTCAACAACAACTCTTGAGGA CATGCTACAAATATCTGATCCTGGTACGCGCTATATTGTGTTATATCACTTCTATTTAGTTTGTCTGCATTAGATGTTGA ATATCTCATTCACTTCTTTGATAAGCTTTTTCTATATTGGTTATACACACTGAATGACTATAAATCTATAATACACACTC TTACATCAAATTTGTTAAAAAATGATTATAGATGAGGAAATTGATTTCTATCTCCGTCTTCACTTACACGACATAAGTGG TAGCATAACAAAGAAAGGAAACAAAGGGACTCAAGACTTTCAATCGTTGGAGCAGAAACTGACACCCATTCCTTTATTGA AGTTGACCGAGGTATGGTGTAATTTTATTTTATTGTTTTACTCCTTTAAGAAACTAGGCATATTGGATGGACTCATGGAG ACAATTTGAATTAAACATCTAGACATGATGAAGTTTTTTTGTTGATAAAGTTTACTTCATTAACAAATTCAGAACTGTTT GCCTTGGATATTCATCTGCATAAAGTACACACTCAGATGTGAATCTGCAGTTACATTTTCTCAGTATTAGAGGAAACAGA TGTTGTGAGATTAATGCTTCTAAACATTTTTTTGTGTAGCAGTTGGGTGACGAACAATCAATGGATGAGGCATGTTTGAC AAACCAACAAAAGCAACTTGGAGAATCTGTAAGTAGACATATGATCAAATCCTAAAAGAACAAAACCTATAATTAAATTA CTATTATATAGATAAGGTAACATCCTTGATTGTCACTAATAATAATAACATAATTATCCTAAATTAAAATGCTCATTCAT TTTACACCAATAGCAGAGCAAGTACACCTTAAGTTATACTAAATCATCACAGGATATCTTACATATCTAATATCTATTAT TCTTGTGCAGATCATTAACAGTGGTGTTGAAGAGGAAACCCCATCAAAGAATGCCAATATAGTATATTCATCAATTTGTT CCGAATCCTCTAGCTCACTAGTCACTTCTCAACTTAAATTATGTCCGCATGTAAGTTCATTGTCTGAAAATGCTAATTCC AACATTTTGATCAGCCTTAAAAATAATGCTACCTTGTTTCTGATTTGTTATTTGCCACAAAATTGCAATCAAGAAATTAC AGTACATACTTGCACATTCAAAGTTTTGAATCAAGAGTCTTGAATTCTGAATTGGTTACCTTTTATTCTTATTCTTCCCA GAGTGGAATAAGCCTCAGTCAGACTGAGACAGACACAAACAAAGAAAGTGAAGACCATCCTATAAACCTTGGAGACTTGT GTGTTTCTGAAATGGCTGCAGAGAATCCTTCCACCAAAGATAACTTAGTTGCAAAGGCCCTTGTTGACCTTGAAGAGTCT CTAAAGATGCCTCTGAAGGACATAGCTAGGTCCGAGGTGAACAGCATTCGCCTTCTGACGGCGCTTAAGTTCTTGTCCCA CCTTCCATTAAAAGATGTAGCTATATCAGATGGACTTAAAACTATAATAGACTCTATGCATGACAAACTTCCAATCATTC TATGTTCCTTCAAGCAAGCATTGGTTACCACTGACAAATTTGCTCATCAAAATGAGGCATCCGTTACTACCCTTGTTTCG AAAATTTCTAAGGCAAATGATTTTTTGGATGAAGCTCAACAGAAGGAAGAAATTTTGAAGGAAGAGATTGTTCGGTTGAA GAAAGAAATGAAAGATCGTGAGGATGACCTATCATCTCTTCAGGAGGAAAAGAAGAAGTGCATTCAAGAAACTATAGGGT ACAAAAGGGAGTTTCAAATGGTGGAAGATCAAAGAAAATCTCGGCATGAATTATTTGAGGTGGACTATAAATGGTCTGCT CTATGTTGCCAATTTCAGCACAACCGCATTGTTGATAGAAATCAATGTTAAGTATTTTCCTAGATTTAGCGTGTTTGGAT TTGTGTTGTCAGAATTGATTCGGATATCATATAGTTGATTATAGTAAAATTGAGTTGAAAGTCAAGTGCTTGGATGGATT TATGAGAAAATTGTTTTTATTGAGTATTGTTGTGAAATTCTATAATTGATTATGTTTACC
CDS sequence (LotjaGi1g1v0088300.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAATTCAGAGAAAGTTAATATCAGTTTGTATTGAGAACGGTTCCAAAATTGAAGGCATTTTTCATCTAAAGGGGGT TCCAGTCAATGGACAACAAGTGACCTCATGGTTAGAAGACCTAAAATTGGCTAATTTACCAGAGCTAATGCACATATGGA TGGGTGTCAAACATCTTGTGAGGCTTCAGCATCTTCATAAAGTGCACATTTTCAATTGTCCAAAACTAAAGTTTGTCTTC TCTTCCTCTGTCTTGAGAACCCTACCTTTATTGAAGATCCTAGTGGTAGAACAATGTGAGGAATTGGAACAAATCATCGA GGACGATGAAGAAAATGACAATGTCCCAAATCCTCAATCCCCAAAAGCATGCTTCTCACAGTTAAAATTCCTTCTTGTCA CGCACTGCAACAACTTGAAGCATCTCATGTACATGTCCACACCCCACCACAAGTTTCCAGAACTTGAGTATCTGATCCTA AATCAAGACTCTCATCTAGTGCAAGTGTTTGAGGCTGAACCAGGTGTGAAACAAGGGAAGGTGGAAACTTTGTTTCCAAA ACTGAAACATGTAATGTTAACACAACTACCAAACCTCAATAACATATGTCATGGGATTGAGTTTCAGACCCTTCCTAATC TTCTTATCCACAATTGTCCAAGACTCTCATTTACTTCAACAACAACTCTTGAGGACATGCTACAAATATCTGATCCTGGT ACGCGCTATATTGTGTTATATCACTTCTATTTAGTTTGTCTGCATTAG
Protein sequence (LotjaGi1g1v0088300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTIQRKLISVCIENGSKIEGIFHLKGVPVNGQQVTSWLEDLKLANLPELMHIWMGVKHLVRLQHLHKVHIFNCPKLKFVF SSSVLRTLPLLKILVVEQCEELEQIIEDDEENDNVPNPQSPKACFSQLKFLLVTHCNNLKHLMYMSTPHHKFPELEYLIL NQDSHLVQVFEAEPGVKQGKVETLFPKLKHVMLTQLPNLNNICHGIEFQTLPNLLIHNCPRLSFTSTTTLEDMLQISDPG TRYIVLYHFYLVCLH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 6 | 171 | 166 | 5.8E-8 | ||
| PANTHER | 7 | 118 | 112 | 1.2E-17 | – | |
| PANTHER | 7 | 118 | 112 | 1.2E-17 | – | |
| SUPERFAMILY | 33 | 228 | 196 | 1.87E-6 | – | |
| PANTHER | 120 | 233 | 114 | 1.2E-17 | – | |
| PANTHER | 120 | 233 | 114 | 1.2E-17 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0088300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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