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LotjaGi1g1v0088900.1

Overview

Field Value
Gene ID LotjaGi1g1v0088900
Transcript ID LotjaGi1g1v0088900.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Peptidylprolyl isomerase; TAIR: AT3G55520.1 FKBP-like peptidyl-prolyl cis-trans isomerase family protein; Swiss-Prot: sp|Q9M2S7|FK201_ARATH Peptidyl-prolyl cis-trans isomerase FKBP20-1; TrEMBL-Plants: tr|I3S2Q0|I3S2Q0_LOTJA Peptidylprolyl isomerase; Found in the gene: LotjaGi1g1v0088900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:12873895..12879077) extracted from Lotus japonicus Gifu genome v1.2.

GAAAATTAGTAGGGTTGGTCATAACTTTCAGACGCTCTAAATGGCGCGTGAGGTACAGATTCCCCTGTTGGCTTTTTATT ATTCTTGATAGCAGCGAGAAACAGCTTCATCGTACATGTCTGTCTATGGCCTCTAAACATCTCCGAAACTCGCCGCCGCC GCTTCGTATAGACCCGGTTACCCAATTGACCCGATTCGTTCCAGAAGCTTCTTCTTCACCCTTCAGCTAAGGGTCACTCT TGCTAGGTATTGTTGACTCTTTATCTTTCTGCTAAGCATTGTTTGGCACTTCATCAATTTCATTGCTTGAGATTTTGATT TGGCCTTTACCCAGTTGTTGAAATAACTCTTATATGCTGACAGTGTGTGAAAAATTTAATCTTTTTAAGTGTATGAATTA TGGGTCATTGGTCTTACTTGTGGAGGTTCTAGAAAAGTAGAGAGCTGAAGTTACATGCTTTTGATGGAGGATGTAATAGG GTTATGGGTTTTCATTTGTTTTGTGGTGGGAATTGGAGATTGGATTTGATAAACGAGTCTGAATTGCATAATCTAGTAGT AGTATAGGTTAATGATTTTTTTCTGATTTCTGCATAGTGGGGCTGAACTGAATTAACTATGGTTTGATTGGAATTTTGTT GTGAGTTTTTGGTTCTGTGTGGTTTCAACCTGTACCCCTTTTTTTGTTTTATTCTTTCCATGCACTTCTTAAGTTGATTT TTGATGTTTTAATGCAACCCTATCAACTAAAGCTTTATGTTTGTTATTTTAATATCTGTCAACAGTGTGCAAACCATGGG TGATGCAATTGATTTGACTGGGGATGGAGGAGTTCTCAAGACCATTTTGAGGAAAAGCAAGCCGGATGCTGTGGCTCCAT CGGATGATCTTCCTCTTGTTGATGGTATGGTTTTGCACTTTTGCTAGTAGTGTGGATTGTTTAGAGCTTTTATAGTGATG AACTATCTTACTTGGTAATAAAATCACTGTTGTTATTAGGTGTTGTAGAACTCACTGCAATTGCAATTTTAGATTCTCTT TTATCTTCATTGGTTCAAGAGAAATTGAGATATCTCTGATCCTCTATCTGTTTGCAGATGGTATACTCTTATCTTCTATT TGCTAGCCATGTATATACACTTTCAGGCTGAAAATATATGGGGATGGTAGCATAGTTATCGATCGCGGCAAATAGCAGCG CTATCGCGCCGTCGCGTCGCGGCCCTTCCCCGCGATTCTGAGTCGATCGCGTCGCGGAACGCCGTCGCGGCTGTCGCGCC GCGAATCGCGTTCGATCACGTTCAATCGCGGTGCAGGTTGAAGATGGGTCGGGTTCAAGGAAAATCCCCAAATTGCCCTC AAAATTGTAAAATTAGGTTAAAATTTGAGGGTACTTTTGGAATTTCGCTCTTAATAAGTGAAACGGTGCGTTTCACTCGT CTTCTTCACGCGTTTCTTCTTTCTTTACGCGTTTCCTCTGCAACCTGCAACCTTCTTCAACGCGTTTCTCCGGTGCGACT TGCTTCCCCTCAGCCACCTTCGACCAGAAGTCCAGAACCCATGGCCACGGCGCAATCTGACAAGCACCGTCCAGGCTCCG GCGACCACCACCCCTGTTTACCCTTGGGCCTTTATTCTGTTCTGAGTTGCTCTGTTTTTTTCTTCTTTTCCTCTATTTTT TTTTCCTTTCTTTTAGTAATTATATGTATATATTAGTTATATAATATTATATGTGAAAAATCAAAATAGCGGTCATCCCG CTATCCGCTATCCCGCTATCCCACTTTTGGGGTCGGCCGCTATGCGCCGCGATCCGGGATTGACTACTATGGATGGTAGC AATTGAAGTACATGGCCTTTAATATGAACGTCCCTGTACTTAACTCTAGTATTAGTTAAATAAGGATTAGTGTTGCAACT TAAGAGGAACACTCTCTTAGGAGTGATGCAAAGCATGTCTCGTTTGATTTGATGATCAAATTGGAATATTAAAAATTTAC AAGCTAGGGTTAGAGTATATCAAGGTTTGATGCTGTGAACTAGTGAGAGGAAAGGAATCTTAGCAAAAGACTAGTCGTTC CATGCTGGTAAAAACTAACAGTAGCGGAAAATCTGTACTCAAGCATTCTATGTATGTTTAGGAAAATTAGAGATTGATAG ATTATGATTTTACAAGTGGGGTTACTTTAAGATGACTGACTATTAGAACAGAACAGGGTATAAACTGCAGATATAAGATT AGAAAAGAAAAAAAGGGAAACAGCATAGGATGAATGAAAAATATGACAAGTTAAACATTAACCCATGTGTCACTCAATCC AAAGATAACAAACTTACAGGTTTTGGAATTATGCCTAAAAGTATCATGACCAAAATAAAAGGCATCACACATCGAAGTAA TCTGTAATTTCAATTCCAATACTATAACAGTTTCAACCTTAGTTATGTTGTTGTAGGCATTAGGACTTGCTTACGAGTAC AAAGCCCATTTGTCCCAACCATGAAAATGTGTTTCAAAGCAACATAATATTTAAGCTTAAATACCAACTCTAACATGGGA CTGCGTCATTGAAGTACGTGTGATTTGTATAAAGTCAGAGTTAAACTCAACCTCCTTACACTATAACATATTAGTGGAGT CAGTAAGAACCAATTTATGTGGGGGAATAGCTGATCATGTATTAAATTCAGAACATCTTTCAATATTGCTTTGTTTTTTA ATTCTTCATGCCTATGTATTCTTTGCCATCTTGGGTCCTCTGTCAACTGGAGTACTGGATGATTAAATACCATACTATCG CATTGGACAGTAGACCAGAAATATAAGTTTGTTTCTTGACCTGGTCTTTTATATTCAGTTTTTTTGCATAAACTAATTTT ATAAATCTCTCATGTTGAAAGCTCTTCTTCTCTGGTATGGGAAACGTACTCTGATTCTATAGATTATACTATTCTGCTTT GCTGGAAAATTTGTTTACTTTTCTTCCCTTTGCTGGAAGGCTAAGAAGCAATATCTTGCTATATATTTGGCAGTAAGCTG TATAGCTAAATCTATTGGAAATGGTGATCTTTTTAATTATGATTATAATATTACTCATCCCAGATGAGACCAATAATTTG GAGCTCTGCATGCTTGGCTTGTCATTTCTTTAACACTGTTTCCCTCAATCAGTACACTATGAAGGCACGCTTGCTGATAC TGGTGAAGTATTTGACACTACACATGAAGATAACACTATATTCTCTTTCGAGCTTGGAAAGGGTAGTGTTATTAAGGCTT GGGACGTTGCAGTGAAAACCATGAAGGTCTAACACTGCATGATTTTGATGAGCTGTAATTATTTATATAAAGGTTTCTTA TTTTGTTTTTTTGCTGGATTTAACAGGTTGGAGAAATTGCAAAAATAACATGCAAGCCGGAATATGCATATGGTAGTGCA GGATCTCCACCAGATATTCCCCCAGAGTACTGATCTCATTTCATTCACAATAAGAATAAATTTTTGTTAATAATTTCTTT TAAAAGGAAACTTCCTACCTAGAAAAATAAAAGAATGTCAGAAAAGCCATTTATTATCAAAATCTTTTTACTCTAAGGAC TTCATCAGTGTGTATGAACAAAATATGAATCTGGGATAGCCATCGTAGTAATGTTCTGATTATGCAATTATCAGGTTAAG TTATATAGTAAATTTCGGAAGCTTGGTTTTTTAATGTTACCTAATCTACTGTTCTAACTAAACTCACAAGAAGTTGTATC TTCTTGAGAATGCAAATTAATATATAACAAAGAAAAAGGCAGCCCGGTGCACGAAATCTCCCTCTATGGGTGGGTCCGGG GAAGGGTATGACCACTTGGTCTATTTACGCTGTCTTACCTTGCTTTTTAAACAATAGGCTGTTTCAAGGACTTTAACCCG TGACCTCAGTCGCATGAAACAACTTTTTACTTTTTTACCTATGCAAATTAATCATTTATCTTATTATTATTCCCTTGCAG TGCAACACTTGTTTTCGAAGTTGAGCTACTTGCCTGTAATCCGCGTAAGGGCTCCAGTCTGGGAAGTGTTACTGAGGAGC GGGCTAGGCTAGAGTAAGTGGCACATTATATGCCTTAACCATTTTCTGTTTTTCTGATCCTCTGCAGAAGTGGAGTTGGC TTGTTATTTTTGTTTGCTTGGGATATATCCTTCTCATCAGTGGCAAATGTGATGTGTTTATTGTAGAGAGCTGAAAAAGC AGAGAGAGATAGCTGCTGCTGTCAAAGAAGAGGAGAAAAAGAAGAGAGAAGAAGCAAAAGCTGCTGCTGCAGCTCGTGTG CAAGCCAAGTTAGGAGCCAAGAAAGGTCAAGGAAAGGGTAAAGGGAAAGCAAAGTAGGGGCTTAAGACATCTACATAATA ATCAAATGGCTATATATTTGTGTCCATTATCTCTCTTCAGTTTGAGTCCATCCTAAATGAAATAATTGTTAACATGGTGC TAGACTGACTTCAGATGCATAATAATTTGAGCATAGGATATTGGGTAGCTTACTATGGAATGAACATGAAATAACATGGT TTTTCATTGCAGTATTTCCCATTGAGTTCTTTGTGTTCTAGTGATTATACACTACTAAGACCCTGTTTGGAATACTTTAT TTAAGTTTATCTTATAGCATAAACGTTTATACATGTGCTTGGTATAGCGTATGTAAATAGCCTATGACCTATCTATACAC TGTTTTGAGCTTATTTTCATAAGCTTTGACAAAAAATAAAACTTATTTTCATAAGCTGCTCATATTAGCTTATGACCTTT AGCCATTAAGCTGTTTATCCAAATACACCTTAACTAATTACTAGGCAATTTAGCTGGCATGAGTGTAGATTAATGGGTCC TAACTGTTCTTAATTTCAGCTCATAAATGTAATCATGTGAAGTCTGAAATGAGATAACCCCAAATCATTTAGGAAACAAA AAAGGAAGAAAAATAATTACACAAAAATGAACCCGATTATCGAAATTGCTCAGGATACCCTTTTTTAGCTTTTAGAATCT ATTTCTTAGTTCAACAGACAAATGTTTCTTGTTGAATATTGTAATTACACACCAATATATGATTTAGAATATTTACGCCA TTTATAACTTCACATAAAATATGACTTTTGCTGATTAATTTGTGGATGTACAATCATTCTTTT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0088900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGTGATGCAATTGATTTGACTGGGGATGGAGGAGTTCTCAAGACCATTTTGAGGAAAAGCAAGCCGGATGCTGTGGC TCCATCGGATGATCTTCCTCTTGTTGATGTACACTATGAAGGCACGCTTGCTGATACTGGTGAAGTATTTGACACTACAC ATGAAGATAACACTATATTCTCTTTCGAGCTTGGAAAGGGTAGTGTTATTAAGGCTTGGGACGTTGCAGTGAAAACCATG AAGGTTGGAGAAATTGCAAAAATAACATGCAAGCCGGAATATGCATATGGTAGTGCAGGATCTCCACCAGATATTCCCCC AGATGCAACACTTGTTTTCGAAGTTGAGCTACTTGCCTGTAATCCGCGTAAGGGCTCCAGTCTGGGAAGTGTTACTGAGG AGCGGGCTAGGCTAGAAGAGCTGAAAAAGCAGAGAGAGATAGCTGCTGCTGTCAAAGAAGAGGAGAAAAAGAAGAGAGAA GAAGCAAAAGCTGCTGCTGCAGCTCGTGTGCAAGCCAAGTTAGGAGCCAAGAAAGGTCAAGGAAAGGGTAAAGGGAAAGC AAAGTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0088900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGDAIDLTGDGGVLKTILRKSKPDAVAPSDDLPLVDVHYEGTLADTGEVFDTTHEDNTIFSFELGKGSVIKAWDVAVKTM KVGEIAKITCKPEYAYGSAGSPPDIPPDATLVFEVELLACNPRKGSSLGSVTEERARLEELKKQREIAAAVKEEEKKKRE EAKAAAAARVQAKLGAKKGQGKGKGKAK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.10.50.40
2 120 119 1.4E-40 –
PANTHER
PTHR10516:SF412
7 184 178 1.3E-99 –
PANTHER
PTHR10516
7 184 178 1.3E-99 –
SUPERFAMILY
SSF54534
8 118 111 2.55E-33 –
ProSiteProfiles
PS50059
32 121 90 27.461
IPR001179
Pfam
PF00254
34 118 85 6.3E-28
IPR001179
Coils
Coil
131 161 31 - –
MobiDBLite
mobidb-lite
154 188 35 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003755
Molecular function Peptidyl-prolyl cis-trans isomerase activity Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0088900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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