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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0088900 |
| Transcript ID | LotjaGi1g1v0088900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peptidylprolyl isomerase; TAIR: AT3G55520.1 FKBP-like peptidyl-prolyl cis-trans isomerase family protein; Swiss-Prot: sp|Q9M2S7|FK201_ARATH Peptidyl-prolyl cis-trans isomerase FKBP20-1; TrEMBL-Plants: tr|I3S2Q0|I3S2Q0_LOTJA Peptidylprolyl isomerase; Found in the gene: LotjaGi1g1v0088900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:12874701..12878337) extracted from Lotus japonicus Gifu genome v1.2.
TATCAACTAAAGCTTTATGTTTGTTATTTTAATATCTGTCAACAGTGTGCAAACCATGGGTGATGCAATTGATTTGACTG GGGATGGAGGAGTTCTCAAGACCATTTTGAGGAAAAGCAAGCCGGATGCTGTGGCTCCATCGGATGATCTTCCTCTTGTT GATGGTATGGTTTTGCACTTTTGCTAGTAGTGTGGATTGTTTAGAGCTTTTATAGTGATGAACTATCTTACTTGGTAATA AAATCACTGTTGTTATTAGGTGTTGTAGAACTCACTGCAATTGCAATTTTAGATTCTCTTTTATCTTCATTGGTTCAAGA GAAATTGAGATATCTCTGATCCTCTATCTGTTTGCAGATGGTATACTCTTATCTTCTATTTGCTAGCCATGTATATACAC TTTCAGGCTGAAAATATATGGGGATGGTAGCATAGTTATCGATCGCGGCAAATAGCAGCGCTATCGCGCCGTCGCGTCGC GGCCCTTCCCCGCGATTCTGAGTCGATCGCGTCGCGGAACGCCGTCGCGGCTGTCGCGCCGCGAATCGCGTTCGATCACG TTCAATCGCGGTGCAGGTTGAAGATGGGTCGGGTTCAAGGAAAATCCCCAAATTGCCCTCAAAATTGTAAAATTAGGTTA AAATTTGAGGGTACTTTTGGAATTTCGCTCTTAATAAGTGAAACGGTGCGTTTCACTCGTCTTCTTCACGCGTTTCTTCT TTCTTTACGCGTTTCCTCTGCAACCTGCAACCTTCTTCAACGCGTTTCTCCGGTGCGACTTGCTTCCCCTCAGCCACCTT CGACCAGAAGTCCAGAACCCATGGCCACGGCGCAATCTGACAAGCACCGTCCAGGCTCCGGCGACCACCACCCCTGTTTA CCCTTGGGCCTTTATTCTGTTCTGAGTTGCTCTGTTTTTTTCTTCTTTTCCTCTATTTTTTTTTCCTTTCTTTTAGTAAT TATATGTATATATTAGTTATATAATATTATATGTGAAAAATCAAAATAGCGGTCATCCCGCTATCCGCTATCCCGCTATC CCACTTTTGGGGTCGGCCGCTATGCGCCGCGATCCGGGATTGACTACTATGGATGGTAGCAATTGAAGTACATGGCCTTT AATATGAACGTCCCTGTACTTAACTCTAGTATTAGTTAAATAAGGATTAGTGTTGCAACTTAAGAGGAACACTCTCTTAG GAGTGATGCAAAGCATGTCTCGTTTGATTTGATGATCAAATTGGAATATTAAAAATTTACAAGCTAGGGTTAGAGTATAT CAAGGTTTGATGCTGTGAACTAGTGAGAGGAAAGGAATCTTAGCAAAAGACTAGTCGTTCCATGCTGGTAAAAACTAACA GTAGCGGAAAATCTGTACTCAAGCATTCTATGTATGTTTAGGAAAATTAGAGATTGATAGATTATGATTTTACAAGTGGG GTTACTTTAAGATGACTGACTATTAGAACAGAACAGGGTATAAACTGCAGATATAAGATTAGAAAAGAAAAAAAGGGAAA CAGCATAGGATGAATGAAAAATATGACAAGTTAAACATTAACCCATGTGTCACTCAATCCAAAGATAACAAACTTACAGG TTTTGGAATTATGCCTAAAAGTATCATGACCAAAATAAAAGGCATCACACATCGAAGTAATCTGTAATTTCAATTCCAAT ACTATAACAGTTTCAACCTTAGTTATGTTGTTGTAGGCATTAGGACTTGCTTACGAGTACAAAGCCCATTTGTCCCAACC ATGAAAATGTGTTTCAAAGCAACATAATATTTAAGCTTAAATACCAACTCTAACATGGGACTGCGTCATTGAAGTACGTG TGATTTGTATAAAGTCAGAGTTAAACTCAACCTCCTTACACTATAACATATTAGTGGAGTCAGTAAGAACCAATTTATGT GGGGGAATAGCTGATCATGTATTAAATTCAGAACATCTTTCAATATTGCTTTGTTTTTTAATTCTTCATGCCTATGTATT CTTTGCCATCTTGGGTCCTCTGTCAACTGGAGTACTGGATGATTAAATACCATACTATCGCATTGGACAGTAGACCAGAA ATATAAGTTTGTTTCTTGACCTGGTCTTTTATATTCAGTTTTTTTGCATAAACTAATTTTATAAATCTCTCATGTTGAAA GCTCTTCTTCTCTGGTATGGGAAACGTACTCTGATTCTATAGATTATACTATTCTGCTTTGCTGGAAAATTTGTTTACTT TTCTTCCCTTTGCTGGAAGGCTAAGAAGCAATATCTTGCTATATATTTGGCAGTAAGCTGTATAGCTAAATCTATTGGAA ATGGTGATCTTTTTAATTATGATTATAATATTACTCATCCCAGATGAGACCAATAATTTGGAGCTCTGCATGCTTGGCTT GTCATTTCTTTAACACTGTTTCCCTCAATCAGTACACTATGAAGGCACGCTTGCTGATACTGGTGAAGTATTTGACACTA CACATGAAGATAACACTATATTCTCTTTCGAGCTTGGAAAGGGTAGTGTTATTAAGGCTTGGGACGTTGCAGTGAAAACC ATGAAGGTCTAACACTGCATGATTTTGATGAGCTGTAATTATTTATATAAAGGTTTCTTATTTTGTTTTTTTGCTGGATT TAACAGGTTGGAGAAATTGCAAAAATAACATGCAAGCCGGAATATGCATATGGTAGTGCAGGATCTCCACCAGATATTCC CCCAGAGTACTGATCTCATTTCATTCACAATAAGAATAAATTTTTGTTAATAATTTCTTTTAAAAGGAAACTTCCTACCT AGAAAAATAAAAGAATGTCAGAAAAGCCATTTATTATCAAAATCTTTTTACTCTAAGGACTTCATCAGTGTGTATGAACA AAATATGAATCTGGGATAGCCATCGTAGTAATGTTCTGATTATGCAATTATCAGGTTAAGTTATATAGTAAATTTCGGAA GCTTGGTTTTTTAATGTTACCTAATCTACTGTTCTAACTAAACTCACAAGAAGTTGTATCTTCTTGAGAATGCAAATTAA TATATAACAAAGAAAAAGGCAGCCCGGTGCACGAAATCTCCCTCTATGGGTGGGTCCGGGGAAGGGTATGACCACTTGGT CTATTTACGCTGTCTTACCTTGCTTTTTAAACAATAGGCTGTTTCAAGGACTTTAACCCGTGACCTCAGTCGCATGAAAC AACTTTTTACTTTTTTACCTATGCAAATTAATCATTTATCTTATTATTATTCCCTTGCAGTGCAACACTTGTTTTCGAAG TTGAGCTACTTGCCTGTAATCCGCGTAAGGGCTCCAGTCTGGGAAGTGTTACTGAGGAGCGGGCTAGGCTAGAGTAAGTG GCACATTATATGCCTTAACCATTTTCTGTTTTTCTGATCCTCTGCAGAAGTGGAGTTGGCTTGTTATTTTTGTTTGCTTG GGATATATCCTTCTCATCAGTGGCAAATGTGATGTGTTTATTGTAGAGAGCTGAAAAAGCAGAGAGAGATAGCTGCTGCT GTCAAAGAAGAGGAGAAAAAGAAGAGAGAAGAAGCAAAAGCTGCTGCTGCAGCTCGTGTGCAAGCCAAGTTAGGAGCCAA GAAAGGTCAAGGAAAGGGTAAAGGGAAAGCAAAGTAG
CDS sequence (LotjaGi1g1v0088900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTGTTATTTTAATATCTGTCAACAGTGTGCAAACCATGGGTGATGCAATTGATTTGACTGGGGATGGAGGAGTTCT CAAGACCATTTTGAGGAAAAGCAAGCCGGATGCTGTGGCTCCATCGGATGATCTTCCTCTTGTTGATGTACACTATGAAG GCACGCTTGCTGATACTGGTGAAGTATTTGACACTACACATGAAGATAACACTATATTCTCTTTCGAGCTTGGAAAGGGT AGTGTTATTAAGGCTTGGGACGTTGCAGTGAAAACCATGAAGGTTGGAGAAATTGCAAAAATAACATGCAAGCCGGAATA TGCATATGGTAGTGCAGGATCTCCACCAGATATTCCCCCAGATGCAACACTTGTTTTCGAAGTTGAGCTACTTGCCTGTA ATCCGCGTAAGGGCTCCAGTCTGGGAAGTGTTACTGAGGAGCGGGCTAGGCTAGAAGAGCTGAAAAAGCAGAGAGAGATA GCTGCTGCTGTCAAAGAAGAGGAGAAAAAGAAGAGAGAAGAAGCAAAAGCTGCTGCTGCAGCTCGTGTGCAAGCCAAGTT AGGAGCCAAGAAAGGTCAAGGAAAGGGTAAAGGGAAAGCAAAGTAG
Protein sequence (LotjaGi1g1v0088900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFVILISVNSVQTMGDAIDLTGDGGVLKTILRKSKPDAVAPSDDLPLVDVHYEGTLADTGEVFDTTHEDNTIFSFELGKG SVIKAWDVAVKTMKVGEIAKITCKPEYAYGSAGSPPDIPPDATLVFEVELLACNPRKGSSLGSVTEERARLEELKKQREI AAAVKEEEKKKREEAKAAAAARVQAKLGAKKGQGKGKGKAK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 9 | 133 | 125 | 1.1E-40 | – | |
| PANTHER | 20 | 197 | 178 | 1.6E-99 | – | |
| PANTHER | 20 | 197 | 178 | 1.6E-99 | – | |
| SUPERFAMILY | 21 | 131 | 111 | 1.79E-33 | – | |
| ProSiteProfiles | 45 | 134 | 90 | 27.461 | ||
| Pfam | 47 | 131 | 85 | 7.5E-28 | ||
| Coils | 144 | 174 | 31 | - | – | |
| MobiDBLite | 167 | 201 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Peptidyl-prolyl cis-trans isomerase activity | Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0). |
Expression pattern of LotjaGi1g1v0088900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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