Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0093200.1

Overview

Field Value
Gene ID LotjaGi1g1v0093200
Transcript ID LotjaGi1g1v0093200.1
Lotus japonicus genome version Gifu v1.2
Description Calcium binding protein; TAIR: AT3G03430.1 Calcium-binding EF-hand family protein; Swiss-Prot: sp|O81092|ALL3_OLEEU Polcalcin Ole e 3; TrEMBL-Plants: tr|I3ST68|I3ST68_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0093200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:13652366..13652633) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCTGATGATCCTCAAGATGTAGCTGATAGGGAGCGCATTTTCAAGCGTTTTGATGCGAACGGTGACGGCCAGATCTC CTCATCGGAGCTTGGGGAAGCACTGAAAACACTTGGATCCGTGACCGCTGAAGAGGTGCAGAGGATGATGGATGAGATTG ATATTGATGGGGATGGGTTCATTTCATATGAGGAGTTCACATCGTTTGCCAGAGCCAACCGTGGTCTTGTAAAGGATGTT GCCAAGATTTTTTAACTCATCACCCTAA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0093200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGATGATCCTCAAGATGTAGCTGATAGGGAGCGCATTTTCAAGCGTTTTGATGCGAACGGTGACGGCCAGATCTC CTCATCGGAGCTTGGGGAAGCACTGAAAACACTTGGATCCGTGACCGCTGAAGAGGTGCAGAGGATGATGGATGAGATTG ATATTGATGGGGATGGGTTCATTTCATATGAGGAGTTCACATCGTTTGCCAGAGCCAACCGTGGTCTTGTAAAGGATGTT GCCAAGATTTTTTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0093200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MADDPQDVADRERIFKRFDANGDGQISSSELGEALKTLGSVTAEEVQRMMDEIDIDGDGFISYEEFTSFARANRGLVKDV AKIF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:1.10.238.10
2 84 83 1.6E-26 –
ProSiteProfiles
PS50222
6 41 36 14.151
IPR002048
SUPERFAMILY
SSF47473
9 70 62 1.54E-21
IPR011992
PANTHER
PTHR10891
9 84 76 1.3E-36
IPR039647
PANTHER
PTHR10891:SF775
9 84 76 1.3E-36 –
SMART
SM00054
10 38 29 9.1E-4
IPR002048
CDD
cd00051
12 71 60 1.51147E-16
IPR002048
Pfam
PF13499
13 70 58 2.9E-14
IPR002048
ProSitePatterns
PS00018
19 31 13 -
IPR018247
ProSiteProfiles
PS50222
44 76 33 12.449
IPR002048
SMART
SM00054
45 73 29 9.4E-6
IPR002048
ProSitePatterns
PS00018
54 66 13 -
IPR018247

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005509
Molecular function Calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0093200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…