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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0093400 |
| Transcript ID | LotjaGi1g1v0093400.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcium binding family protein; TAIR: AT1G66400.1 calmodulin like 23; Swiss-Prot: sp|Q9C8Y1|CML23_ARATH Probable calcium-binding protein CML23; TrEMBL-Plants: tr|A0A1J7GQF0|A0A1J7GQF0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0093400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:13690029..13693986) extracted from Lotus japonicus Gifu genome v1.2.
ATTGCGGAAGAAAACGCGTGAAACCCCGCACCATATCCTATAAATTGTGCCGTTCCATCTCACTTGGGAAAAAAAATTTC TCAAACCAAACCCTAAAAACGGTTACGAGAGGAAGAGCCCTGAGATTTCGTTCTCTCACTCTCGCCGGTGGTTGAGAAGA GAAGACTCCGCCGCCGCCGCCATGGACGACGAAGTGCGCAAGATTTTCAACAAGTTTGACAAGAACGGCGACGGAAAGAT CTCGTGCACGGAGCTGAAGGAGATGCTCTGCGCGCTCGGCACCAAGACTTCCTCCGAGGAGGTGAAGCGCATGATGGCGG AGATCGACCAGAACGGCGACGGCTACATCGATCTCAAGGAGTTCGCGGAGTTTCACCTCCACGACGCCGGAGAAGACGAT TCCAAGGAGCTTCGTGACGCCTGCGATCTCTATGACCTCGACAAGAACGGCCTCATCTCCGCTAACGAGCTTCACTCCGT GCTCAAGAAACTCGGCGAGAAATGCTCCCTCGGTGACTGCCGGAAGATGATCAGCAACGTCGATGCCGACGGCGACGGAA ACGTCAACTTCGAGGAGTTCAAGAAGATGATGGCTCGCTCCTAGGCTCTGATCTAAACGGTGCGTTTTAGTTTCATCACA TCACGGTGTTCGTATGGTTTAGGATTAACGAAATAGCTAGTTCAGAAACTCAGAATTGCACATACAGTAGTTGAAATCTT ATGTACATTCTCTGCGGTGCTAATAGTTAGCTAGCTTAGTTTTCTGGTTAATTGCTGATGACTTGAATCGTGAAAAAACG TTTGGTTGCTTTTGCTATTTTCATCGTCGCTGGAATCTGAATCTGATTAAATTTCATATGCTATAGTTTTTGCTATAGAA ATTCGTGTTCTCGATCGAAAACAGAAAAACTAAAGTGGCAAGTTTCATGGAGTAATTATAACGTAACGGTGAAGTTTTGA TTTGATTGGTTGTTGTAGTGTTGATGATATAACTGCATCATCAGTATTCAATGTGTGTGGTGTGGTTGAATGTAATTAAT TGAATTGAAAAGTGATGGGAAACGGAAAACGCGTGAGCGGTTTGGGGTGGGTGTGTGATTTGAAAATGGCATATAACGTG AGTGGTAGTGCTGAGCTCAACGCGGAGTTTGAATGGGATGGAAATATAGAATATTGGAGGTCAATTGTATGAATTTGTTA CTTGCTATTTTGAAAGAATATTAAATAATGTTTTCCTAAGTAATATTATTATAGTTCTTAGTATGTGTGTTTTTTATTTT TTGATAATTAATGAATGTAGTCTTAGTTATTTTTTATAAGTGAACTAGTACTTTTTACCCGTGCGATGCACGGGATATTC ATTTTTGAGTTTTTTTTGATGTTTTTTTGTTAAATATGTTTTTATTTAAATATATTTTATTGATTAAAATATTATAAAAA AATTGTACTATGAATTCTTATGTTTTGTTTTTATTAAATTTTTGTTTTTTTTTGTATTGTTACTTTGTTTTTGTCTTTTG ACTTGTTGATTTCAAATGGAAGATTAATATTATTTTTATCTGTATTGAAGTAAGATTGTTGCGCTAAGAATAAGTGGTTT TTTCTGCAATTGGCATTATTTGATTGAGAATAAAACTGAGAACCTAATATTTCACATTTTTGTAAAAATATGTCTTTCAC ATTACATCGCAAAATACTTCTTTGTAAACTACATTTGAAGTACTATTTGAATTATTGTCATCACCATCGCCAATGAGGAT TTTTAATCCTTTACGATGGGTAACTCTAAAGAAGGCTACATATAACTGGCCATGTGAAAACACTGGTTTTGGCAAAAATA ACCCTACCCTTTTCAGAGATTGTCCTTGACTTTTGTTTATTGTCATGGCAAAAGAGAGCGCTATAGGGAATTGTCTCCTT TGAAACTTGAAAGGAATTCTTCTATCTGATGGGGTCAATGTTAATCTTGGTATAGGCACCCTTTTCCCGGCCTTTGTTCC TGATATAACCTTGCCTTCCAAAACATATTTTCCCATTTCAGTGATAATCAGACGCGTACCATTGCACAATCCAGCTGATT GGTCGATGTTTCTCAAAAGCATCACTGGAGCTCCTTTTTTTAGCTTTAACATATGATTAGGCAAACCTGAAGAGTTTATT GTGTTTAAAAACTCTGGTGTATGGATATCATCTGGACTGTCATAATTGCTGTCTGATGAACATGTGTTATCGGCACTCAA ATAAGTGTTCTCATCTCCGGGCAACAATGACATCATGTATTCATTCAAACTATCAACAATCTCATTTGTAGGAGCTAAAA TAGCACGATCTTTAAAAAATTCTGGATTTTCGTAGTTTTGAACGAAAGACGGATAAGTAGAGTTGACAATAGAAGCCATT GCATCACCTGAATGTGGGATCAAAAAATCCTGAGGGATGTCTATGATTGTTTCATCTTCTATCTGCTTACCTGCATTTCC ATCTCCTATGCATAATATCCATTTTGAAAATTTTTTTAGCTCATCAACCTCTGCAACTGATCTTCCAGTTTGTAGCCTCA TATTTTTTGTTAATGAAAGTACCTGTTCATTATTCAAAAGATAAGAACCATTGTTATAGTTCAAGTTGTTGGTTAATTTT TTTTTTTGGTATTTTTTGATCAATTTAAAAGCAAACATTATTGGGAGAAATGGTAATGTACCTGACAATGATCCCAAAGA TAAGAAGCATTGATGGTGGCATGGACAATATCCTCCCTTCTACCTTTAGGCATCACTGGCAAAATTTGCCTAAAATCTCC ACCTAAGACAACAACTTTTCCTCCAAAAGGTTTGCGTTGACTGTTGTTGTTAGTAAATCTCATAATATCTCTTAGAGTTC GATCCACCGCTTCAAAACAATGTTTGTGAGTCATGGGCGCTTCATCCCATATTATGATTTTAGCTCTGATGATCAATTCT GCCAATGGACTTCCCTATTTAATGTTGCAGGTAGAGCTCTCATCAACATTAATTGGAATACAAAACCTGGAGTGTGCTGT CCGTCCGCCCGGAATGAGCAAAGCTGCAATTCCACTTGATGCAACCGCTAAAGCAATCTCTCCTTTGGATCTTATAGCTG CTGATAATGCTCTCCAAATGTAAGTTTTCCCTATCCCTCCATAACCATTGAGGAAAAACAAACCCCCCTTGTCATGAGTA ACTGCATCCATGATTGTTTGATAGACCTTTTTTTGTTCTGACGTCATGTTAGACAAAAGATTTTCATGCTCTACGGTTAA AGCTTGTCTATCATAACACAATTCATCCATAATAAGTCTATTTTGAGTAGCTGATATAGTGGATCTATCAATTTGAGGCA TTTGTGGGAAGTCTGCTAATGACCTGTTGTTGCTTTGCAGTAAAGTGTCTATTTCGGCAAGAGCGAAATTTTTTATTTGC TCCTCAGTAAGCTTCAAATCTGCAATAACATTGTAAGTAGTCGTGTAAGAAAAATAATATCTATTATTTTTTTTTGTGAG TATTGTTGTTTTTATAAATGTGTAATTTCAACTGCAGTTACCTGTACGCTGCATAAGGAGTCTTTGTGTATGCAGAATAT CATCACTTAAATGCTGCCAGACTTTTTCCCAAACGTATTCTGCTCTAGAAAGCTGATAGGACAAAAGCAGAATAGCATAA AGCCTTCTAAGATAGCGTGCACTACCCCAATGGGAAGCTTCTTCAATGCAATCGATGTACTCTTTATCATCTTCAAGCAA TCCCATAGCATAACACGCGTCCTTGAAGGTGTTGTATATGACTTCACCTACTTTTCTTAGGTCTTGGACATCACAAAATA TTAGCTCTTGCTCTAATGTTTATGCACATATTGTACCTATATATAGAACTCATGAGTGTGGATTCTAACTTTAAAGAAAG GAACCAAAAGGCAAGTATAAATTAAATTTTAAATAGAC
CDS sequence (LotjaGi1g1v0093400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGACGAAGTGCGCAAGATTTTCAACAAGTTTGACAAGAACGGCGACGGAAAGATCTCGTGCACGGAGCTGAAGGA GATGCTCTGCGCGCTCGGCACCAAGACTTCCTCCGAGGAGGTGAAGCGCATGATGGCGGAGATCGACCAGAACGGCGACG GCTACATCGATCTCAAGGAGTTCGCGGAGTTTCACCTCCACGACGCCGGAGAAGACGATTCCAAGGAGCTTCGTGACGCC TGCGATCTCTATGACCTCGACAAGAACGGCCTCATCTCCGCTAACGAGCTTCACTCCGTGCTCAAGAAACTCGGCGAGAA ATGCTCCCTCGGTGACTGCCGGAAGATGATCAGCAACGTCGATGCCGACGGCGACGGAAACGTCAACTTCGAGGAGTTCA AGAAGATGATGGCTCGCTCCTAG
Protein sequence (LotjaGi1g1v0093400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDEVRKIFNKFDKNGDGKISCTELKEMLCALGTKTSSEEVKRMMAEIDQNGDGYIDLKEFAEFHLHDAGEDDSKELRDA CDLYDLDKNGLISANELHSVLKKLGEKCSLGDCRKMISNVDADGDGNVNFEEFKKMMARS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 66 | 66 | 1.6E-22 | – | |
| ProSiteProfiles | 1 | 35 | 35 | 16.076 | ||
| PANTHER | 2 | 140 | 139 | 6.0E-74 | ||
| PANTHER | 2 | 140 | 139 | 6.0E-74 | – | |
| SUPERFAMILY | 3 | 138 | 136 | 3.27E-42 | ||
| Pfam | 4 | 64 | 61 | 2.9E-14 | ||
| SMART | 4 | 32 | 29 | 9.8E-5 | ||
| CDD | 4 | 65 | 62 | 1.49607E-17 | ||
| ProSitePatterns | 13 | 25 | 13 | - | ||
| ProSiteProfiles | 36 | 71 | 36 | 13.286 | ||
| SMART | 40 | 68 | 29 | 7.2E-4 | ||
| ProSitePatterns | 49 | 61 | 13 | - | ||
| Gene3D | 67 | 140 | 74 | 1.8E-22 | – | |
| ProSiteProfiles | 72 | 107 | 36 | 13.788 | ||
| CDD | 76 | 138 | 63 | 2.31549E-16 | ||
| SMART | 76 | 104 | 29 | 1.6E-4 | ||
| ProSitePatterns | 85 | 97 | 13 | - | ||
| Pfam | 89 | 139 | 51 | 1.1E-10 | – | |
| ProSiteProfiles | 108 | 140 | 33 | 13.258 | ||
| SMART | 112 | 140 | 29 | 3.1E-6 | ||
| ProSitePatterns | 121 | 133 | 13 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi1g1v0093400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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