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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0094500 |
Transcript ID | LotjaGi1g1v0094500.5 |
Related isoforms 5 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Glucan endo-1,3-beta-glucosidase-like protein; TAIR: AT1G66250.1 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|Q9C7U5|E132_ARATH Glucan endo-1,3-beta-glucosidase 2; TrEMBL-Plants: tr|G7K1P2|G7K1P2_MEDTR Glucan endo-1,3-beta-glucosidase-like protein; Found in the gene: LotjaGi1g1v0094500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:14251184..14252697) extracted from Lotus japonicus Gifu genome v1.2.
ATGCTTCCCAATCCAACATTGTGTTATTGGATTGGTTTATCAAGTGAGGACTTGAATCTTATTCTAACATTTGAACCTTG CAGAACCATTTATTGGAGTGAACATTGGAACAGATCTCTCAGATATGCCACACCCTACCCAAGTAGTGGCTCTACTTAAA GCTCAGAAGATTCGAAATGTTCGGTTGTATGATGCTGACCAAGCTATGCTCATTGCACTGGCAAAGACAGGCATTCAAGT TGTTGTAACTGTTCCTAATGAAGAGCTCTTAGGAATTGGTCAATCGAATTCCACAGCTGCCAACTGGGTTTTCCGCAATG TGGTAGCACATTACCCTGCCACCAATATCACCGCCATTTGTGTCGGTTCTGAGGTTCTAACCACCCTGCCTAATGCAGCA AAAGTGCTTGTCAATGCGATCAAGTACATTCATTCAGCCCTTGTCGCGTCGAATCTCGATCGCCAAGTTAAAGTCTCAAC GCCTCTTTCCTCTTCAATCATCCTTGATTCATTTCCACCTTCACAGGCTTTTTTTAACCGCTCAATGAATTCAGTTTTGG TCCCGATTCTCGATTTCCTCCAATCCTCTGGCTCTTATCTCATGCTCAACATTTACCCTTACTATGATTACATGCAATCA AATGGTGTGATTCCATTAGATTATGCACTCTTCAAGCCTCTCCCTCCGAACAAAGAAGCCGTTGATTCTAACACCCTTCT CCATTACTCAAATGTCTTTGATGCCATGGTTGATGCAGCATACTTTGCCATGGCTTTTCTAAATTACACTAACATCCCTG TGGTGGTGACGGAGTCCGGCTGGCCCTCAAAAGGCGACTCCGACGAGCCTGATGCAACTGTGGACAATGCTAATACTTAC AACAGCAATTTGATCCAGCATGTGATTAACAAAACTGGAACCCCCAAACACCCTGGAATTGCTGTTAGTACTTACATCTA TGAGCTCTACAATGAGGACATGAAAACCGGGCCGCTGTCGGAGAAGAATTGGGGGCTGTTTGATGCTAATGGGGTACCTA TTTACATTCTACACTTGACAGGTTCAGGAGCTGTCCTAGCTAATGATACCAGCAATCAAACTTTCTGCATTGTGAAGGAT GGTGCCGACCCGAAGATGGTGCAGGCTGCACTGGATTGGGCATGTGGCCCTGGCAAGGTGGAATGTTCTTCATTGCTGCA GGGTCAACCATGCTATGAACCAGACAATGTGATTTCACATGCAAGTTATGCTTTTGACAGTTACTATCATAAGATGGGAA ACACTCCTGATTCATGTGACTTCAAGGGAGTGGCAACAATCACCACCTCTGATCCAAGTAATTACTATTCCCCAATATTG GGTTGGATTTGGGTTCCTGCAGTTCAGGGCAATCCTAAATTCACACAATCAAGGAATCCGAGACATTTGATCAAAAGTTG GACGACTCATTTTTCATTGAGAACAGACAGCAGAGATGAGCTCAAAATTTGAGATGGTCCAGATTTTGACCTAG
CDS sequence (LotjaGi1g1v0094500.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCACACCCTACCCAAGTAGTGGCTCTACTTAAAGCTCAGAAGATTCGAAATGTTCGGTTGTATGATGCTGACCAAGC TATGCTCATTGCACTGGCAAAGACAGGCATTCAAGTTGTTGTAACTGTTCCTAATGAAGAGCTCTTAGGAATTGGTCAAT CGAATTCCACAGCTGCCAACTGGGTTTTCCGCAATGTGGTAGCACATTACCCTGCCACCAATATCACCGCCATTTGTGTC GGTTCTGAGGTTCTAACCACCCTGCCTAATGCAGCAAAAGTGCTTGTCAATGCGATCAAGTACATTCATTCAGCCCTTGT CGCGTCGAATCTCGATCGCCAAGTTAAAGTCTCAACGCCTCTTTCCTCTTCAATCATCCTTGATTCATTTCCACCTTCAC AGGCTTTTTTTAACCGCTCAATGAATTCAGTTTTGGTCCCGATTCTCGATTTCCTCCAATCCTCTGGCTCTTATCTCATG CTCAACATTTACCCTTACTATGATTACATGCAATCAAATGGTGTGATTCCATTAGATTATGCACTCTTCAAGCCTCTCCC TCCGAACAAAGAAGCCGTTGATTCTAACACCCTTCTCCATTACTCAAATGTCTTTGATGCCATGGTTGATGCAGCATACT TTGCCATGGCTTTTCTAAATTACACTAACATCCCTGTGGTGGTGACGGAGTCCGGCTGGCCCTCAAAAGGCGACTCCGAC GAGCCTGATGCAACTGTGGACAATGCTAATACTTACAACAGCAATTTGATCCAGCATGTGATTAACAAAACTGGAACCCC CAAACACCCTGGAATTGCTGTTAGTACTTACATCTATGAGCTCTACAATGAGGACATGAAAACCGGGCCGCTGTCGGAGA AGAATTGGGGGCTGTTTGATGCTAATGGGGTACCTATTTACATTCTACACTTGACAGGTTCAGGAGCTGTCCTAGCTAAT GATACCAGCAATCAAACTTTCTGCATTGTGAAGGATGGTGCCGACCCGAAGATGGTGCAGGCTGCACTGGATTGGGCATG TGGCCCTGGCAAGGTGGAATGTTCTTCATTGCTGCAGGGTCAACCATGCTATGAACCAGACAATGTGATTTCACATGCAA GTTATGCTTTTGACAGTTACTATCATAAGATGGGAAACACTCCTGATTCATGTGACTTCAAGGGAGTGGCAACAATCACC ACCTCTGATCCAAGTAATTACTATTCCCCAATATTGGGTTGGATTTGGGTTCCTGCAGTTCAGGGCAATCCTAAATTCAC ACAATCAAGGAATCCGAGACATTTGATCAAAAGTTGGACGACTCATTTTTCATTGAGAACAGACAGCAGAGATGAGCTCA AAATTTGA
Protein sequence (LotjaGi1g1v0094500.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPHPTQVVALLKAQKIRNVRLYDADQAMLIALAKTGIQVVVTVPNEELLGIGQSNSTAANWVFRNVVAHYPATNITAICV GSEVLTTLPNAAKVLVNAIKYIHSALVASNLDRQVKVSTPLSSSIILDSFPPSQAFFNRSMNSVLVPILDFLQSSGSYLM LNIYPYYDYMQSNGVIPLDYALFKPLPPNKEAVDSNTLLHYSNVFDAMVDAAYFAMAFLNYTNIPVVVTESGWPSKGDSD EPDATVDNANTYNSNLIQHVINKTGTPKHPGIAVSTYIYELYNEDMKTGPLSEKNWGLFDANGVPIYILHLTGSGAVLAN DTSNQTFCIVKDGADPKMVQAALDWACGPGKVECSSLLQGQPCYEPDNVISHASYAFDSYYHKMGNTPDSCDFKGVATIT TSDPSNYYSPILGWIWVPAVQGNPKFTQSRNPRHLIKSWTTHFSLRTDSRDELKI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 1 | 311 | 311 | 1.8E-113 | – | |
PANTHER | 1 | 419 | 419 | 4.5E-259 | – | |
PANTHER | 1 | 419 | 419 | 4.5E-259 | – | |
Pfam | 2 | 309 | 308 | 2.9E-77 | ||
SUPERFAMILY | 2 | 309 | 308 | 5.63E-83 | ||
ProSitePatterns | 224 | 237 | 14 | - | ||
SMART | 326 | 410 | 85 | 2.6E-40 | ||
Pfam | 327 | 398 | 72 | 8.8E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0094500.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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