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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0097300 |
| Transcript ID | LotjaGi1g1v0097300.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger protein, putative; TAIR: AT1G66140.1 zinc finger protein 4; Swiss-Prot: sp|Q39263|ZFP4_ARATH Zinc finger protein 4; TrEMBL-Plants: tr|C6T8Q3|C6T8Q3_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0097300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:14775845..14779142) extracted from Lotus japonicus Gifu genome v1.2.
CCTAAACCGTCACTTTTAAGTAGAATCAAACATGTATCACTTAAAGTTTTGAAACAATCATAAGTTTTAGGAATATGCCC AAAATTGCAAAAAAGAAAAACTGAGATACAACCATATCCTCTCACTCTTTCTCTTTTTCTCTCTTTTTATATATCCCAGA ACCCCCCTTTTACTCCTCTGACTTCTCTGTCCCTAACTCTCCTCTCCTTTGTTACCTGTTCTTTCCTATAATCAAATTCA AACATCAATACCTACCATCCCTCACTCTCTCTCTCCCCATTTACTCCTTTAGTTTTTATTCCTTTTCAGTTAAAACTTCT TAGTTAAACAAATATGCAATCTCATGTTACCTTGTATTAGTCTTTCAGAAGCATTGAAAACCTGAGGACCAGTTTTGTCC TCTCATAATCAGTCATAGCAAGAAAAAGCAACACTTGAAACAGATGTCTCCAATTCCAAAGCAGTTTTTAGGGTGATTTC AGAAGCAAGCCACTTTCACTTGATCTTGAAATTTGAGACTGCCATCTATGTACTTAACTACTGTCCACAGGTTGTCTTCT TCTTACTATTCATGTATTCCCACTTTTCCTTTTCTTAAGCCTTTCTTGGTTTTCAGAAAAGTTGGAATCACAGAGTAAAG GAAATGGTTTCTGGATTTTACTTTCAAACTTCTCATCATCCCATCAGTGCACCCTTTTGGCATCATGAAACTCTGCATCT CTTGCCAAGGATCCTAAGTAATTTTTGTCTCTAAGAGATCCCAGTAAGCTTTCTTTGGAGTTAAACTGTGTGTTTGTTCA TGTAGAATGAAAATCCTGGTTCATTATGTCCTAAGATTTCCAAAAAAAAGAATGTGAAATAAGTAGCTGCATGCAATTCT TTGTTTAGGATGTGTTAGCTCTTCATATTCATGTCTAAGTTTTTTTCGGTCTTCTGTGCTGAAATGGTGGTCTCTCTATC TCCTTTTGTCTCTAAACCTTGACTTGCAATTAATCACTTGCAAAATGATAGAGATGCTTTCTCTCTCTCTCTCTAGGCAA GGGACCGAGCTGCACTTAATTATGGAGTTCAGACTTCCAAGTATTATGGCTCTTGGAAATATATGATCTGAAAGAATCTC CATACAATATTCCATATTGATTTCAGATCAGATATTAATAGGTTACTCATTAGAGTAAGAAATGGAAGGAATTTGATTTC TTGTATTAGTACTTAGTTCATGAACTTCCTGACATGCCACCTTGATACTTTATTCCATTTCCTAAGTTTCTAAAGAGTAG CAAATATAACAAGAATATATGAAGATACAGTCAGGAATAGTTCATCACTAAAGGTGTTCAACTGTATTCTCCCTGTCTGA ATAGGCATCCTTTTACAGAAGGTTGACCTTAAATTCAATCATACATTTATGGGATGGTTTTGAATGTTTCACATGCAGCA ATCAGCATTCTTGGTTGCATAATTCTAAATAATCCATCTTTAAACATGATTCATGGTTGAATATGTTAAGCCATTTGATC CAGGTAGCTGACACTAACTGGTGGAAAATGGCTTTAGTTGTTGTTGTTATAAGTCTGAAATGTTGGTGCTTCCAGAAATA GAAGAAGAGGAAATCTTTTTTGTGAATCGTGTTCTTAATTTGAAAGAACTAATGGGCTTACACAGAGCTAGGCACAAAGC ATAGGTTGTTTGTGTCTAAGTCACCTTTCAGAGCATCAAAAACCAATATAAATTATTAGCTCAAGAATTTCTAGTTTTGA TGATTGCTAAATATGAACTGATTGGTTACCATGTCTTACCTATGTGCAGGATAAAACAAATCTTTCACTGCTAGCTCTGA AATAGATCTTATATTCTAACTTAAGCACAGCCATATCATGAAACCAAACATTGATCTTGAAGTGGAGGCCTATGCAGAAT ATGAATCTGATGTTACCAGCCAAGTTGCTTCTTCCAATGTATCATCAATTCAAGAAACCTCTTTGGATCCTTGCAGTGAC TACAGCCTCACTAACTCTTCCATCATCACAAATCCATCATCAGGTGATGATGTTTCACTTGGCTTAACTCTCAACTTCAA GAATAATGAGTTAGGGGCAGGGGCAACAGCAGCAGCAACAGACTCAATAGGAGGATTCTCAAGTACTTGTGAGAGCAGCA ATGAACCTATAGCATTAGCTGCAGCAACCATTCCAAGAGTCTTCTCTTGCAATTACTGTCAGAGAAAGTTCTTCAGCTCT CAGGCTCTTGGGGGGCACCAGAATGCACACAAGAGAGAGAGGACATTAGCCAAAAGGGCCATGAGAATGGGGTTTTTCTC TGAAAGGTATGCAAGTCTAGCATCTCTCCCTCTTCATGGTTCTTTCAGATCTTTAGGGATAAAGGCACACTCCTCACTGC ATCATGGTTTCTCTCCACCATTAGCAATGAGGCCTAATACTCCTACTGAGGTTAAAAGCAATGCAAAATTTGAGCAAGGG TATCCTGGCCTTCCAATATTCTTGGAGGATGATGATTCAGATTTGCTTTGGCCTGGTAGTTTCCGCCAGGTTGCAGTGGA AACAGGTGATAATAGCCACCAGAATTTCATACTGACTGGAAATTCAGGTTTGAGTTTCACTGAGGTGAATCCACCTTTAG AGGTAGAGAACTCCACACCAGATTTGACATTGAAGCTTTGAAGGAGGAATTTGGATTCCTTGCAGTCGAAAAATTCCTAA ATTCACGCTGTCATAGAATTTGAGCCGTTCAATCAAGATGTCTCAATTCTTAAGGTAATCTCTATGAATGAACTTGGTGA AATATATGAGCCGACCGATCTAGATCTAACGGTGTAGATTTCTTGAACGCGTGAATGTAGGATTATTCTGACAGCAAAGA ATTGAGATGTCTGCTTTATTGATATATTATTGTACGGTAATCGCATGTTTGGATCAGCTTCTATTTCAACAGAATCAATT ATGGCATACAGAAGCTACTCACAAAAGTTTCTCCTCTCATAACTGGCTATGCTTGGAAAATTAATTGTAGAATGATTTAC AAACATGTAGTAAGATATGTATGAAAGGGGCCATATGATTGCCAGATTGGTTACCGCACTTTGTTAGATTTGCTCTTTCT TTCATTTTTCGGTTTTCCCTTAGGAGTCCTTGCTTTGGTAGTTTGCCCTGTATGTTTCTCAATGTATTAAGAGCTCTAGG AGGACCATTTTGGAGCATCCGTGTTTGGCATATAAGTTATGTACTGTATGTTTTCTTTGCCTTTGATTTCTATTATGGAT TATAATGATGATTTATAA
CDS sequence (LotjaGi1g1v0097300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAACCAAACATTGATCTTGAAGTGGAGGCCTATGCAGAATATGAATCTGATGTTACCAGCCAAGTTGCTTCTTCCAA TGTATCATCAATTCAAGAAACCTCTTTGGATCCTTGCAGTGACTACAGCCTCACTAACTCTTCCATCATCACAAATCCAT CATCAGGTGATGATGTTTCACTTGGCTTAACTCTCAACTTCAAGAATAATGAGTTAGGGGCAGGGGCAACAGCAGCAGCA ACAGACTCAATAGGAGGATTCTCAAGTACTTGTGAGAGCAGCAATGAACCTATAGCATTAGCTGCAGCAACCATTCCAAG AGTCTTCTCTTGCAATTACTGTCAGAGAAAGTTCTTCAGCTCTCAGGCTCTTGGGGGGCACCAGAATGCACACAAGAGAG AGAGGACATTAGCCAAAAGGGCCATGAGAATGGGGTTTTTCTCTGAAAGGTATGCAAGTCTAGCATCTCTCCCTCTTCAT GGTTCTTTCAGATCTTTAGGGATAAAGGCACACTCCTCACTGCATCATGGTTTCTCTCCACCATTAGCAATGAGGCCTAA TACTCCTACTGAGGTTAAAAGCAATGCAAAATTTGAGCAAGGGTATCCTGGCCTTCCAATATTCTTGGAGGATGATGATT CAGATTTGCTTTGGCCTGGTAGTTTCCGCCAGGTTGCAGTGGAAACAGGTGATAATAGCCACCAGAATTTCATACTGACT GGAAATTCAGGTTTGAGTTTCACTGAGGTGAATCCACCTTTAGAGGTAGAGAACTCCACACCAGATTTGACATTGAAGCT TTGA
Protein sequence (LotjaGi1g1v0097300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKPNIDLEVEAYAEYESDVTSQVASSNVSSIQETSLDPCSDYSLTNSSIITNPSSGDDVSLGLTLNFKNNELGAGATAAA TDSIGGFSSTCESSNEPIALAAATIPRVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRAMRMGFFSERYASLASLPLH GSFRSLGIKAHSSLHHGFSPPLAMRPNTPTEVKSNAKFEQGYPGLPIFLEDDDSDLLWPGSFRQVAVETGDNSHQNFILT GNSGLSFTEVNPPLEVENSTPDLTLKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 267 | 267 | 2.6E-112 | – | |
| PANTHER | 1 | 267 | 267 | 2.6E-112 | – | |
| Gene3D | 100 | 151 | 52 | 3.1E-5 | – | |
| SUPERFAMILY | 107 | 136 | 30 | 3.19E-6 | ||
| ProSiteProfiles | 109 | 136 | 28 | 11.344 | ||
| ProSitePatterns | 111 | 131 | 21 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0097300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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