Transcript — View — Lotus Base

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LotjaGi1g1v0097300.3

Overview

Field	Value
Gene ID	LotjaGi1g1v0097300
Transcript ID	LotjaGi1g1v0097300.3
Related isoforms 3	LotjaGi1g1v0097300.1 LotjaGi1g1v0097300.2 LotjaGi1g1v0097300.4
Lotus japonicus genome version	Gifu v1.2
Description	Zinc finger protein, putative; TAIR: AT1G66140.1 zinc finger protein 4; Swiss-Prot: sp\|Q39263\|ZFP4_ARATH Zinc finger protein 4; TrEMBL-Plants: tr\|C6T8Q3\|C6T8Q3_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0097300
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:14775945..14779161) extracted from Lotus japonicus Gifu genome v1.2.

CTGAGATACAACCATATCCTCTCACTCTTTCTCTTTTTCTCTCTTTTTATATATCCCAGAACCCCCCTTTTACTCCTCTG ACTTCTCTGTCCCTAACTCTCCTCTCCTTTGTTACCTGTTCTTTCCTATAATCAAATTCAAACATCAATACCTACCATCC CTCACTCTCTCTCTCCCCATTTACTCCTTTAGTTTTTATTCCTTTTCAGTTAAAACTTCTTAGTTAAACAAATATGCAAT CTCATGTTACCTTGTATTAGTCTTTCAGAAGCATTGAAAACCTGAGGACCAGTTTTGTCCTCTCATAATCAGTCATAGCA AGAAAAAGCAACACTTGAAACAGATGTCTCCAATTCCAAAGCAGTTTTTAGGGTGATTTCAGAAGCAAGCCACTTTCACT TGATCTTGAAATTTGAGACTGCCATCTATGTACTTAACTACTGTCCACAGGTTGTCTTCTTCTTACTATTCATGTATTCC CACTTTTCCTTTTCTTAAGCCTTTCTTGGTTTTCAGAAAAGTTGGAATCACAGAGTAAAGGAAATGGTTTCTGGATTTTA CTTTCAAACTTCTCATCATCCCATCAGTGCACCCTTTTGGCATCATGAAACTCTGCATCTCTTGCCAAGGATCCTAAGTA ATTTTTGTCTCTAAGAGATCCCAGTAAGCTTTCTTTGGAGTTAAACTGTGTGTTTGTTCATGTAGAATGAAAATCCTGGT TCATTATGTCCTAAGATTTCCAAAAAAAAGAATGTGAAATAAGTAGCTGCATGCAATTCTTTGTTTAGGATGTGTTAGCT CTTCATATTCATGTCTAAGTTTTTTTCGGTCTTCTGTGCTGAAATGGTGGTCTCTCTATCTCCTTTTGTCTCTAAACCTT GACTTGCAATTAATCACTTGCAAAATGATAGAGATGCTTTCTCTCTCTCTCTCTAGGCAAGGGACCGAGCTGCACTTAAT TATGGAGTTCAGACTTCCAAGTATTATGGCTCTTGGAAATATATGATCTGAAAGAATCTCCATACAATATTCCATATTGA TTTCAGATCAGATATTAATAGGTTACTCATTAGAGTAAGAAATGGAAGGAATTTGATTTCTTGTATTAGTACTTAGTTCA TGAACTTCCTGACATGCCACCTTGATACTTTATTCCATTTCCTAAGTTTCTAAAGAGTAGCAAATATAACAAGAATATAT GAAGATACAGTCAGGAATAGTTCATCACTAAAGGTGTTCAACTGTATTCTCCCTGTCTGAATAGGCATCCTTTTACAGAA GGTTGACCTTAAATTCAATCATACATTTATGGGATGGTTTTGAATGTTTCACATGCAGCAATCAGCATTCTTGGTTGCAT AATTCTAAATAATCCATCTTTAAACATGATTCATGGTTGAATATGTTAAGCCATTTGATCCAGGTAGCTGACACTAACTG GTGGAAAATGGCTTTAGTTGTTGTTGTTATAAGTCTGAAATGTTGGTGCTTCCAGAAATAGAAGAAGAGGAAATCTTTTT TGTGAATCGTGTTCTTAATTTGAAAGAACTAATGGGCTTACACAGAGCTAGGCACAAAGCATAGGTTGTTTGTGTCTAAG TCACCTTTCAGAGCATCAAAAACCAATATAAATTATTAGCTCAAGAATTTCTAGTTTTGATGATTGCTAAATATGAACTG ATTGGTTACCATGTCTTACCTATGTGCAGGATAAAACAAATCTTTCACTGCTAGCTCTGAAATAGATCTTATATTCTAAC TTAAGCACAGCCATATCATGAAACCAAACATTGATCTTGAAGTGGAGGCCTATGCAGAATATGAATCTGATGTTACCAGC CAAGTTGCTTCTTCCAATGTATCATCAATTCAAGAAACCTCTTTGGATCCTTGCAGTGACTACAGCCTCACTAACTCTTC CATCATCACAAATCCATCATCAGGTGATGATGTTTCACTTGGCTTAACTCTCAACTTCAAGAATAATGAGTTAGGGGCAG GGGCAACAGCAGCAGCAACAGACTCAATAGGAGGATTCTCAAGTACTTGTGAGAGCAGCAATGAACCTATAGCATTAGCT GCAGCAACCATTCCAAGAGTCTTCTCTTGCAATTACTGTCAGAGAAAGTTCTTCAGCTCTCAGGCTCTTGGGGGGCACCA GAATGCACACAAGAGAGAGAGGACATTAGCCAAAAGGGCCATGAGAATGGGGTTTTTCTCTGAAAGGTATGCAAGTCTAG CATCTCTCCCTCTTCATGGTTCTTTCAGATCTTTAGGGATAAAGGCACACTCCTCACTGCATCATGGTTTCTCTCCACCA TTAGCAATGAGGCCTAATACTCCTACTGAGGTTAAAAGCAATGCAAAATTTGAGCAAGGGTATCCTGGCCTTCCAATATT CTTGGAGGATGATGATTCAGATTTGCTTTGGCCTGGTAGTTTCCGCCAGGTTGCAGTGGAAACAGGTGATAATAGCCACC AGAATTTCATACTGACTGGAAATTCAGGTTTGAGTTTCACTGAGGTGAATCCACCTTTAGAGGTAGAGAACTCCACACCA GATTTGACATTGAAGCTTTGAAGGAGGAATTTGGATTCCTTGCAGTCGAAAAATTCCTAAATTCACGCTGTCATAGAATT TGAGCCGTTCAATCAAGATGTCTCAATTCTTAAGGTAATCTCTATGAATGAACTTGGTGAAATATATGAGCCGACCGATC TAGATCTAACGGTGTAGATTTCTTGAACGCGTGAATGTAGGATTATTCTGACAGCAAAGAATTGAGATGTCTGCTTTATT GATATATTATTGTACGGTAATCGCATGTTTGGATCAGCTTCTATTTCAACAGAATCAATTATGGCATACAGAAGCTACTC ACAAAAGTTTCTCCTCTCATAACTGGCTATGCTTGGAAAATTAATTGTAGAATGATTTACAAACATGTAGTAAGATATGT ATGAAAGGGGCCATATGATTGCCAGATTGGTTACCGCACTTTGTTAGATTTGCTCTTTCTTTCATTTTTCGGTTTTCCCT TAGGAGTCCTTGCTTTGGTAGTTTGCCCTGTATGTTTCTCAATGTATTAAGAGCTCTAGGAGGACCATTTTGGAGCATCC GTGTTTGGCATATAAGTTATGTACTGTATGTTTTCTTTGCCTTTGATTTCTATTATGGATTATAATGATGATTTATAAAG TATGAACTCATCTTATT

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0097300.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAACCAAACATTGATCTTGAAGTGGAGGCCTATGCAGAATATGAATCTGATGTTACCAGCCAAGTTGCTTCTTCCAA TGTATCATCAATTCAAGAAACCTCTTTGGATCCTTGCAGTGACTACAGCCTCACTAACTCTTCCATCATCACAAATCCAT CATCAGGTGATGATGTTTCACTTGGCTTAACTCTCAACTTCAAGAATAATGAGTTAGGGGCAGGGGCAACAGCAGCAGCA ACAGACTCAATAGGAGGATTCTCAAGTACTTGTGAGAGCAGCAATGAACCTATAGCATTAGCTGCAGCAACCATTCCAAG AGTCTTCTCTTGCAATTACTGTCAGAGAAAGTTCTTCAGCTCTCAGGCTCTTGGGGGGCACCAGAATGCACACAAGAGAG AGAGGACATTAGCCAAAAGGGCCATGAGAATGGGGTTTTTCTCTGAAAGGTATGCAAGTCTAGCATCTCTCCCTCTTCAT GGTTCTTTCAGATCTTTAGGGATAAAGGCACACTCCTCACTGCATCATGGTTTCTCTCCACCATTAGCAATGAGGCCTAA TACTCCTACTGAGGTTAAAAGCAATGCAAAATTTGAGCAAGGGTATCCTGGCCTTCCAATATTCTTGGAGGATGATGATT CAGATTTGCTTTGGCCTGGTAGTTTCCGCCAGGTTGCAGTGGAAACAGGTGATAATAGCCACCAGAATTTCATACTGACT GGAAATTCAGGTTTGAGTTTCACTGAGGTGAATCCACCTTTAGAGGTAGAGAACTCCACACCAGATTTGACATTGAAGCT TTGA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0097300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKPNIDLEVEAYAEYESDVTSQVASSNVSSIQETSLDPCSDYSLTNSSIITNPSSGDDVSLGLTLNFKNNELGAGATAAA TDSIGGFSSTCESSNEPIALAAATIPRVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRAMRMGFFSERYASLASLPLH GSFRSLGIKAHSSLHHGFSPPLAMRPNTPTEVKSNAKFEQGYPGLPIFLEDDDSDLLWPGSFRQVAVETGDNSHQNFILT GNSGLSFTEVNPPLEVENSTPDLTLKL

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR45730:SF23 View details on PTHR45730:SF23 Search for proteins/transripts with this domain View external data on PTHR45730:SF23	1	267	267	2.6E-112	–
PANTHER	PTHR45730 View details on PTHR45730 Search for proteins/transripts with this domain View external data on PTHR45730	1	267	267	2.6E-112	–
Gene3D	G3DSA:3.30.160.60 View details on G3DSA:3.30.160.60 Search for proteins/transripts with this domain View external data on G3DSA:3.30.160.60	100	151	52	3.1E-5	–
SUPERFAMILY	SSF57667 View details on SSF57667 Search for proteins/transripts with this domain View external data on SSF57667	107	136	30	3.19E-6	IPR036236 Show description in modal box View details on IPR036236 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50157 View details on PS50157 Search for proteins/transripts with this domain View external data on PS50157	109	136	28	11.344	IPR013087 Show description in modal box View details on IPR013087 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSitePatterns	PS00028 View details on PS00028 Search for proteins/transripts with this domain View external data on PS00028	111	131	21	-	IPR013087 Show description in modal box View details on IPR013087 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003676 View details of GO:0003676 AmiGO InterPro QuickGO	Molecular function	Nucleic acid binding	Interacting selectively and non-covalently with any nucleic acid.	Subterm of View details of GO:0097159 View details of GO:1901363

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0097300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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