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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0099900 |
| Transcript ID | LotjaGi1g1v0099900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein trichome birefringence; TAIR: AT3G03210.1 Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein; Swiss-Prot: sp|Q8VYR3|TBL2_ARATH Protein trichome birefringence-like 2; TrEMBL-Plants: tr|G7KFU4|G7KFU4_MEDTR Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein; Found in the gene: LotjaGi1g1v0099900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:15215256..15217750) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTTCCTCAATATGGACAAAATAACCACAAGACCCTTTGTCATATTCCAAAATACAAACCCACCCACCACTACCTCAT ACTTGTGAGATAAAATGGAGGAAGACAAGTGAGAACCGATTCCTAAATAAAAGTAAAAAAGATCCAAAATGTCACCCAAC AACAACAACTGTACAAGTACAACACTCACAATCATTGCCACCATGGTGTTCTGAATCCTCCTCCTTCTTCTTCTCCTTCT GCTGTTACCACGTTCCCATCATCACCATTCACCACCACCACCACCACCACCACCACCACCACGTTTACCAAATATTGAAA CCTTTGATCACAAGCCATTCATAAATCTCCCCACCAACTTTCACTCTAACCCCTTTTGTTGTTTTTTTCTTCAGATCTCA GGTTTTTCCTTCACGGGTTCAGAAAAATCTGCAACCCCATTATTCAAAATCCATTCATTCTGGTGATTCAGAGGATTCTG AGGTAGATGTGAGTGAAAGAGCGATCTGGGGTGTCGGCGAGGTGGCGATGTTAGGGGCGGTGCAGTTGGGTTTGCTGGCG GCGTGTGTGGTGCTGTTTGTTCCAATGGGCATGGCGGGTTGGCACCTGAGCCGTAACAAGGTTCTCTTCTTCAGTGGCGC ACTCTTCATCACTCTCGCAGTTGGTGTTCACCTCACCCCTTATTTCCCTTCAGTTTCCGATTTCATCACATCGGTTTCAT CTTCCTCTTCCTCTAATGTTGATGTTGTTGTTGATGATCGTGATTCTTGTGTTTCCTTGCTTCATGAAATCGACTGGGAG GTAAGACCCAGTAAGGATTTTGATTTAGACCCTTATTTGCATAACAATTCTGTTAACTTTGATAAGTTTTGGTCATGGAG AACATCAAGTTCTGTGGATTCCTGTGATTTTCAGAGGCTGAAACGGCATGATGTTTTGGAATTGCTTAATGGGTCTTGGG TGATGGTTGCAGGGGATTCCCAAGCTCGAATGTTTACTCTTTCGTTGATTAGTTTGGTTCTGGATTCGGAGCGTGTCGAA TCGGTTAGAGCATCTTTGTTTAAGAGGCATAGTGATTACCACATTGTGGTTGATGAGATGGGGATGAAGTTGGATTTCAT TTGGGCACCTTATCCTTCTAATTTGACTGATTTGGTGGTGGAGTTTAAGCATAGCCATGTTTATCCAGATCTCTTGGTGA TGGGTTCGGGTTTGTGGCACATGCTGCATATGACCAATGCTTCTGATTATGGTGTTTTGTTAAGGTTGTTGAGGAGTTCT GTGACAGCATTGTTACCTGTCTCTCCACAATTTGGCATGGATGGACCTGTGACTGGTTCGGTATCGGTTAGGTCTCCGCA TTTGTTCTGGCTAGGTATGCCGACTTTGATAAACTCCATGTTGAATACTCAGGAGAAGAGGGTGAAGATGACTAATCTAA TGCGAGATGAGTATGAGAGTGAGCTTCAGAAGAGTAACATTTTGAGGCAGTTTGGTGGTCCTCTTCAACTATTGGATATA GGGTCATTGAGTTGGAATTGTGGGATCAAGTGTACAGATGATGGGATGCATTATGATGGAGCTGTTTATGAAGCTGGGCT TCAGATCATGTTGAATGCATTGCTTATAGAATCTCATCAGAAGCTCTGACGTTTGTAGCATTGATAGTACGTTCTGATAT CGAGAAACTGGTATGCTAACAGAGGTTTCTCGACATAATTGATTATGACGACAAAATCAGTTTGTAGATGCGCTTCCAAA CATGATCTGATTTCCTCTTTGGATGTGCTTAGCTCCCTCTGGTGGTGGGGGATATATACAGTAGGATACTCCAACGATTT TGATTAATAGAAGTTGAGTCCTTCATCATAGCTTGCAAAATTTTTGTCAGGCTGCTATAGGGTCTTATATTCACTTAGTT TAGAGTGATTTTTATAGCAAATCACATTTGAAATTCTTTTTGATTCCTCTTTTTTATGTTTCATTGTATGCTAACAGCTC ATGTATTGATCACAAAAGTTGGAAAGTAATGTTTCTGTACAAACAATTCACACATGCTTTTAATCAATTTAATTGGGATT CATTCCGAATTTGTTTCTATAAATAAATATCCTTTAGGCTAACAGCTAGCAAGACTGTTGTTGCATGTTAATGTTTGATA GCTTCTGTTTGTTATTTCATTTTCTGACTTATTTTCATGAGTTATTGTGGAGTAGATCAAATGATAGCTGAGGTTAACCA TGAAATCATTGTCTGCTCTTTTCATTGATAATTTGGTATATATAATCTGTTTGGAGGCTGTTTATGTTTTTTGACATGAC AAAATGTTACTGCACCTCAGGGGTTTGGGCTTACACTTAATAGCTCTGAGATTCATGTAGTAGCTTGATGACAAACAACA TCATTTAAATATGACGTCATTAGTTTAAATCACTAATTCTTATCATGATGCACTTAGCATCACTTAGCATCTGTTAATTA GGAATATGATGCACT
CDS sequence (LotjaGi1g1v0099900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTAGGGGCGGTGCAGTTGGGTTTGCTGGCGGCGTGTGTGGTGCTGTTTGTTCCAATGGGCATGGCGGGTTGGCACCT GAGCCGTAACAAGGTTCTCTTCTTCAGTGGCGCACTCTTCATCACTCTCGCAGTTGGTGTTCACCTCACCCCTTATTTCC CTTCAGTTTCCGATTTCATCACATCGGTTTCATCTTCCTCTTCCTCTAATGTTGATGTTGTTGTTGATGATCGTGATTCT TGTGTTTCCTTGCTTCATGAAATCGACTGGGAGGTAAGACCCAGTAAGGATTTTGATTTAGACCCTTATTTGCATAACAA TTCTGTTAACTTTGATAAGTTTTGGTCATGGAGAACATCAAGTTCTGTGGATTCCTGTGATTTTCAGAGGCTGAAACGGC ATGATGTTTTGGAATTGCTTAATGGGTCTTGGGTGATGGTTGCAGGGGATTCCCAAGCTCGAATGTTTACTCTTTCGTTG ATTAGTTTGGTTCTGGATTCGGAGCGTGTCGAATCGGTTAGAGCATCTTTGTTTAAGAGGCATAGTGATTACCACATTGT GGTTGATGAGATGGGGATGAAGTTGGATTTCATTTGGGCACCTTATCCTTCTAATTTGACTGATTTGGTGGTGGAGTTTA AGCATAGCCATGTTTATCCAGATCTCTTGGTGATGGGTTCGGGTTTGTGGCACATGCTGCATATGACCAATGCTTCTGAT TATGGTGTTTTGTTAAGGTTGTTGAGGAGTTCTGTGACAGCATTGTTACCTGTCTCTCCACAATTTGGCATGGATGGACC TGTGACTGGTTCGGTATCGGTTAGGTCTCCGCATTTGTTCTGGCTAGGTATGCCGACTTTGATAAACTCCATGTTGAATA CTCAGGAGAAGAGGGTGAAGATGACTAATCTAATGCGAGATGAGTATGAGAGTGAGCTTCAGAAGAGTAACATTTTGAGG CAGTTTGGTGGTCCTCTTCAACTATTGGATATAGGGTCATTGAGTTGGAATTGTGGGATCAAGTGTACAGATGATGGGAT GCATTATGATGGAGCTGTTTATGAAGCTGGGCTTCAGATCATGTTGAATGCATTGCTTATAGAATCTCATCAGAAGCTCT GA
Protein sequence (LotjaGi1g1v0099900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLGAVQLGLLAACVVLFVPMGMAGWHLSRNKVLFFSGALFITLAVGVHLTPYFPSVSDFITSVSSSSSSNVDVVVDDRDS CVSLLHEIDWEVRPSKDFDLDPYLHNNSVNFDKFWSWRTSSSVDSCDFQRLKRHDVLELLNGSWVMVAGDSQARMFTLSL ISLVLDSERVESVRASLFKRHSDYHIVVDEMGMKLDFIWAPYPSNLTDLVVEFKHSHVYPDLLVMGSGLWHMLHMTNASD YGVLLRLLRSSVTALLPVSPQFGMDGPVTGSVSVRSPHLFWLGMPTLINSMLNTQEKRVKMTNLMRDEYESELQKSNILR QFGGPLQLLDIGSLSWNCGIKCTDDGMHYDGAVYEAGLQIMLNALLIESHQKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 373 | 373 | 1.1E-140 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 373 | 373 | 1.1E-140 | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 6 | 25 | 20 | - | – | |
| Phobius | 26 | 31 | 6 | - | – | |
| TMHMM | 32 | 54 | 23 | - | – | |
| Phobius | 32 | 53 | 22 | - | – | |
| Phobius | 54 | 373 | 320 | - | – | |
| Coils | 292 | 312 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0099900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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