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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0104800 |
| Transcript ID | LotjaGi1g1v0104800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phototropic-responsive NPH3 family protein; TAIR: AT2G30520.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q682S0|RPT2_ARATH Root phototropism protein 2; TrEMBL-Plants: tr|G7K0V9|G7K0V9_MEDTR Root phototropism-like protein; Found in the gene: LotjaGi1g1v0104800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:16189332..16191897) extracted from Lotus japonicus Gifu genome v1.2.
CAATTTGTAACTTGCATTATTGCAGGGTTTTCTCTCAAGAAATCCCAAGTGATGTTACAGTTACAATTGGAGAAGCTGAT TATTCTCTCCATAAGGTACCAAAATATGCATTGCATGGAAAATTGATGATGCTTTTTCTTTATTTTCAATTCAAAATGGT TCAGATTCTAATTAGAAATTGTTAACAGTTCATGCTGGTAGCAAAGAGCAACTACATCAGGGAGCTGATAATAGAAGCAG AGGACAGTGATCTCACCAGAATAGACCTCTCTGACATCCCCGGAGGCCAAGAAGCTTTCGAAAAGGCGGCGAAATTCTGC TACGGCGTCAACTTCGAGATCACCGTCCACAACGTCGCCGCGCTCCACTGCGCCGCCGTGTTCCTCCAGATGACAGAAGA GTACTGCGACGGCAACCTCGCCGGAAGAACAGAAGGCTTCCTCTCTCAGGTCGCCTTCACGAATCTCACGGGCGCCGTCG TTGTCCTCAACTCCTGCCGGCAGTTTGTCCCCGTCGCCGAAGAAATCAGCCTCCTCGACCGCTGCGTCGAGGCCGTCAGC TCTATGGCGTGCAACGAGGCAACCTTCCCCACCCGTTCACCGCCGAATTGGTGGACGGAGGAGCTCGCCGTCCTCGACAT CGATTCGTTCGGAAAAGTCATCGCCGCCATGAAGCAGCGCGGCGCCAAGTACCTAACCCTCGCCGGAGCGCTGATTACAT ACACCGAACGCGCACTCCGGGAGCTAGTGCGAGACCAAACCGGCGGTGGCGGCGGAGGAATCAAGTCACCGGAGCCCGGC GATTCCGAATCCGAACGACGCGATCTTCTGGAATCGATCGTCAGTCTCTTCCCATCTGACAAAGCGGCTTTTCCGATCAA CTTCCTCTGCTGCCTCCTCCGCTGCGCCACCTACCTCCGCGCCTCCAGCGCGTGCAAGCGCGAGCTCGAGAAGCGGATCT CGGAGATTCTGGAGCACGTGACGGTTGACGATCTCATGGTGCTGTCGTTCACCTACGACGGCGAGAGGCTTCTGGATCTG GACAGCGTGCGGAGGATCATCTCCAGTTACATGGAGAAGCAGAAGAGCGCGTCGGTGTTCAACGGCGGCGGTAGCTTCAG GGACGATTGCTCCGCCGTGACGCAGCGGATTGCTAAAACTGTCGACGCTTACCTCGCCGAGATCGCCGCGTACGGCGAAC TCGCCATCTCGAAGTTCAACGGCATCGCCGTTCTCGTCCCCAAAGGCGCGCGAAAACTCGACGATGATCTATACCGCGCC GTGGATATCTACCTCAAGGTATGGAATAGCATACTCTAGTTTCCAATAAGGACTAGAAATAATATTTACTATATTTCCAG GGACTAAAAACATACAACTGACTTTAGTTACTAACGACGCGACACGTGGGTGCTCGTGATGTTTCAGGTGCACCCGAACC TTGATGAGTTAGAGAAGGAGAAGGTGTGTAGTGTGATGGACCCGCTGAAACTGTCTGGTGAGGCACGTGTGCACGCGTCG CAGAACAAGCGTTTGCCGGTGCAGGTGGTGCTTCACGCGTTGTACTATGATCAGTTGAAGATGAGGAGCGGCGCAGCGGA GGAACGGGAGGCGGCGATGGCGAGGGATCACTTGATGACAGACGTGTCGTTGGTGAGGGAGAACGAGGAGTTGAGGTCAG AGGTGATGAGGATGAAAATGTACATTTCTGATATTAAGAAGAACGGTGGTGACGGAACGACGTCGTCGAAGAGGGAGGCG GCGTCGGTGTCTACGAAAAAGCACACGTTCTTCTCTTCAGTGTCTAAGAAATTGGGCAGGCTGAACCCGTTTAAGCACGA GTCTAAGGACACGTCTCATATTGATGATGGGCCTGGTGTGGACTTGACCAAGCCCAGAAGAAGAAGGTTCTCGATCTCTT AGATTGTTTTATTTTGGATTGTTACTGGGTAGTACTTGATTTTATTATAAGGAGCATCCTAGTTTCAACTCGGCTTTGTA TGGCTGACACACGTTGGCTCAGTTGATAAGCATGAAACACTTTTCCTCGGTAGCTTGTGTATTCGATTCCTACTATGATG TGAGGCTCTGTTGGTGGACAATTTATAAGTAGCTTTGTAAGCGACTTGTGGTTCTAAAGGCATGTCTTGACTAATAGAGG TGACCGATGCCAAACTCACCAAAACTTTTTGTTAAAAAAATACTCAGCTTTGTATGGTGGGGTATGTTGATTAGGTTTCA AATTTGTTTTTCTTTTGCTAGTAACTTTTTTTTTCTCTTTTCGTGTTCTTATGTTGTGTATTTGCAGCATTCATTGTAAA GGGCGTGTATACTATACTATGTAGTAAAAGGGGAAAAGTGTTGTATATAGCTTTGGATGGACTATGAGTATGGAAATATG ATTGTGCTTCGTTTTCTAAGTCCATAGCTTGATTCACTCTAGTTGATTTTGCTCTACAAATGTTTCATAGATACCTGACT TGAAGGTGTTTCTTGCAATTCAGGTGTTTCTCTACAAATGTATATAGCTTGATTCATGGCTTCTAGGAAAAACATATTTT CTCATA
CDS sequence (LotjaGi1g1v0104800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGGTAGCAAAGAGCAACTACATCAGGGAGCTGATAATAGAAGCAGAGGACAGTGATCTCACCAGAATAGACCTCTC TGACATCCCCGGAGGCCAAGAAGCTTTCGAAAAGGCGGCGAAATTCTGCTACGGCGTCAACTTCGAGATCACCGTCCACA ACGTCGCCGCGCTCCACTGCGCCGCCGTGTTCCTCCAGATGACAGAAGAGTACTGCGACGGCAACCTCGCCGGAAGAACA GAAGGCTTCCTCTCTCAGGTCGCCTTCACGAATCTCACGGGCGCCGTCGTTGTCCTCAACTCCTGCCGGCAGTTTGTCCC CGTCGCCGAAGAAATCAGCCTCCTCGACCGCTGCGTCGAGGCCGTCAGCTCTATGGCGTGCAACGAGGCAACCTTCCCCA CCCGTTCACCGCCGAATTGGTGGACGGAGGAGCTCGCCGTCCTCGACATCGATTCGTTCGGAAAAGTCATCGCCGCCATG AAGCAGCGCGGCGCCAAGTACCTAACCCTCGCCGGAGCGCTGATTACATACACCGAACGCGCACTCCGGGAGCTAGTGCG AGACCAAACCGGCGGTGGCGGCGGAGGAATCAAGTCACCGGAGCCCGGCGATTCCGAATCCGAACGACGCGATCTTCTGG AATCGATCGTCAGTCTCTTCCCATCTGACAAAGCGGCTTTTCCGATCAACTTCCTCTGCTGCCTCCTCCGCTGCGCCACC TACCTCCGCGCCTCCAGCGCGTGCAAGCGCGAGCTCGAGAAGCGGATCTCGGAGATTCTGGAGCACGTGACGGTTGACGA TCTCATGGTGCTGTCGTTCACCTACGACGGCGAGAGGCTTCTGGATCTGGACAGCGTGCGGAGGATCATCTCCAGTTACA TGGAGAAGCAGAAGAGCGCGTCGGTGTTCAACGGCGGCGGTAGCTTCAGGGACGATTGCTCCGCCGTGACGCAGCGGATT GCTAAAACTGTCGACGCTTACCTCGCCGAGATCGCCGCGTACGGCGAACTCGCCATCTCGAAGTTCAACGGCATCGCCGT TCTCGTCCCCAAAGGCGCGCGAAAACTCGACGATGATCTATACCGCGCCGTGGATATCTACCTCAAGGTGCACCCGAACC TTGATGAGTTAGAGAAGGAGAAGGTGTGTAGTGTGATGGACCCGCTGAAACTGTCTGGTGAGGCACGTGTGCACGCGTCG CAGAACAAGCGTTTGCCGGTGCAGGTGGTGCTTCACGCGTTGTACTATGATCAGTTGAAGATGAGGAGCGGCGCAGCGGA GGAACGGGAGGCGGCGATGGCGAGGGATCACTTGATGACAGACGTGTCGTTGGTGAGGGAGAACGAGGAGTTGAGGTCAG AGGTGATGAGGATGAAAATGTACATTTCTGATATTAAGAAGAACGGTGGTGACGGAACGACGTCGTCGAAGAGGGAGGCG GCGTCGGTGTCTACGAAAAAGCACACGTTCTTCTCTTCAGTGTCTAAGAAATTGGGCAGGCTGAACCCGTTTAAGCACGA GTCTAAGGACACGTCTCATATTGATGATGGGCCTGGTGTGGACTTGACCAAGCCCAGAAGAAGAAGGTTCTCGATCTCTT AG
Protein sequence (LotjaGi1g1v0104800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLVAKSNYIRELIIEAEDSDLTRIDLSDIPGGQEAFEKAAKFCYGVNFEITVHNVAALHCAAVFLQMTEEYCDGNLAGRT EGFLSQVAFTNLTGAVVVLNSCRQFVPVAEEISLLDRCVEAVSSMACNEATFPTRSPPNWWTEELAVLDIDSFGKVIAAM KQRGAKYLTLAGALITYTERALRELVRDQTGGGGGGIKSPEPGDSESERRDLLESIVSLFPSDKAAFPINFLCCLLRCAT YLRASSACKRELEKRISEILEHVTVDDLMVLSFTYDGERLLDLDSVRRIISSYMEKQKSASVFNGGGSFRDDCSAVTQRI AKTVDAYLAEIAAYGELAISKFNGIAVLVPKGARKLDDDLYRAVDIYLKVHPNLDELEKEKVCSVMDPLKLSGEARVHAS QNKRLPVQVVLHALYYDQLKMRSGAAEEREAAMARDHLMTDVSLVRENEELRSEVMRMKMYISDIKKNGGDGTTSSKREA ASVSTKKHTFFSSVSKKLGRLNPFKHESKDTSHIDDGPGVDLTKPRRRRFSIS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 73 | 73 | 3.1E-5 | – | |
| PANTHER | 1 | 533 | 533 | 1.3E-255 | ||
| PANTHER | 1 | 533 | 533 | 1.3E-255 | ||
| CDD | 2 | 79 | 78 | 3.31753E-25 | – | |
| SUPERFAMILY | 2 | 69 | 68 | 1.18E-7 | ||
| ProSiteProfiles | 139 | 420 | 282 | 74.23 | ||
| Pfam | 139 | 395 | 257 | 5.4E-77 | ||
| MobiDBLite | 188 | 207 | 20 | - | – | |
| MobiDBLite | 501 | 533 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Phototropism | The movement of an organism, or part of an organism, in response to a light stimulus, usually toward or away from it. |
Expression pattern of LotjaGi1g1v0104800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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