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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0109400 |
| Transcript ID | LotjaGi1g1v0109400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chloroplast inner envelope family protein; TAIR: AT1G06950.1 translocon at the inner envelope membrane of chloroplasts 110; Swiss-Prot: sp|O24303|TI110_PEA Protein TIC110, chloroplastic; TrEMBL-Plants: tr|A0A151U0Y1|A0A151U0Y1_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0109400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:17015675..17016534) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAGCTGCCATTGAAACAGCTGTATCTCAAGGGAGACTCAATATAAAGCAGATAAGGGAACTTAAGGAAGCCAATGT TGATTTAGACAGTATGGTATCTGAGAACTTGAGAGAGATCCTCTTCAAGAAAACTGTTGATGATATTTTCTCATCAGGTA CTGGAGAGTTTGATGAGGAGGAAGTATATGAAAAAATTCCATTAGATCTCAACATTAATAAAGAGAAAGCAAGAGGCGTT GTCCGTGAGCTCGCACTTACTAGACTTTCTAACTCACTCATCCAGGCCGTGGCACTATTAAGACAGAGAAATCGTGCCGG AGTGGTAAGTATTCTTCTAAGCTCCCTGTTTACTTGTTCAAATAGATTATTAGCTTTGGTTATGTTAGGGGGATTGAAAT CTTCAGTCCCTAAATGATGTCCAAATTTTGTGTCCAATCAATAAAATTGACATGTTGATTAAAAACTACCATGTAAGTTT GTAATTCCCTCATTCATGTATTTTTTAAACGCGATAAGATTTCATCAGTGTAACATGAAATGAAGACATCATTTGAGGAC AATAGATCTTGATCCGTGTCCAGGATGGTCAAGCGTGATGACTTCTTGTCTTTTGTGCAGGTTTCTTCCCTCAATGACTT GCTGGCTTGTGATAAAGCAGTTCCCTCAGAGAAACTTTCATGGGAAGTACCAGAGGAGCTTTCTGATCTATACTCTGTAT ACTTTAAGAGTGATCCAACACCTGAGAAATTGTCTCGTTTGCAGTATCTGTTGGGCATAAATGATTCCACTGCAGCTTCT CTTAGGGAGAGTGGAGATCGATTACTTGAGACTGCAGAGGAAGAGGAGTTTGTATTTTAG
CDS sequence (LotjaGi1g1v0109400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGCTGCCATTGAAACAGCTGTATCTCAAGGGAGACTCAATATAAAGCAGATAAGGGAACTTAAGGAAGCCAATGT TGATTTAGACAGTATGGTATCTGAGAACTTGAGAGAGATCCTCTTCAAGAAAACTGTTGATGATATTTTCTCATCAGGTA CTGGAGAGTTTGATGAGGAGGAAGTATATGAAAAAATTCCATTAGATCTCAACATTAATAAAGAGAAAGCAAGAGGCGTT GTCCGTGAGCTCGCACTTACTAGACTTTCTAACTCACTCATCCAGGCCGTGGCACTATTAAGACAGAGAAATCGTGCCGG AGTGGTTTCTTCCCTCAATGACTTGCTGGCTTGTGATAAAGCAGTTCCCTCAGAGAAACTTTCATGGGAAGTACCAGAGG AGCTTTCTGATCTATACTCTGTATACTTTAAGAGTGATCCAACACCTGAGAAATTGTCTCGTTTGCAGTATCTGTTGGGC ATAAATGATTCCACTGCAGCTTCTCTTAGGGAGAGTGGAGATCGATTACTTGAGACTGCAGAGGAAGAGGAGTTTGTATT TTAG
Protein sequence (LotjaGi1g1v0109400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAAIETAVSQGRLNIKQIRELKEANVDLDSMVSENLREILFKKTVDDIFSSGTGEFDEEEVYEKIPLDLNINKEKARGV VRELALTRLSNSLIQAVALLRQRNRAGVVSSLNDLLACDKAVPSEKLSWEVPEELSDLYSVYFKSDPTPEKLSRLQYLLG INDSTAASLRESGDRLLETAEEEEFVF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 187 | 187 | 9.8E-89 | – | |
| PANTHER | 1 | 187 | 187 | 9.8E-89 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Chloroplast | A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. |
Expression pattern of LotjaGi1g1v0109400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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