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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0111200 |
| Transcript ID | LotjaGi1g1v0111200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LURP-one-like protein; TAIR: AT2G30270.1 LURP-one-like protein (DUF567); Swiss-Prot: sp|Q8GWL2|LOR7_ARATH Protein LURP-one-related 7; TrEMBL-Plants: tr|A0A151U122|A0A151U122_CAJCA UPF0706 protein family; Found in the gene: LotjaGi1g1v0111200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:17340480..17343999) extracted from Lotus japonicus Gifu genome v1.2.
CGACAAGTCTAATAGAAAAAGCAGACATTACAGCAGCCGAAAGCATCTCATTCCATTCTCCACATCCCTTACCTCTTTAA GAATTATTTATCTGAAATTTTTTTTTAATTAAACCCCAAAAAACCTTGCTTTATTTTTCTTTTTAGAAAATAATTTTGTA TTTTGTATGATAACAATGGATGGAAAGAGAGAGGAAGAAGTAGACAAAACAAACATGGAATTGGAAACTTCAGAGTCATC GTATCCAGGATCAGGGAGTTTGCACATCCCAATTGACCTCTTCGGTTCCAAAAAACACGCCGGAGCTCCACGTGGCGTCC TCGCATTCGCCGATGCGTTGGGTAACATACTCTTCACGGTGAACCGCCACCCACCCAATCGGAACTACAAGAAAAAGCTC TTGCTTGATGCCTCCGGCAACATCATCTTCTCCATCTACCGCCACGAGGTTAGTCTCTGTTTTCACTTCTGTGTCTTAAA TTGTTCTCGCAATTTCGACCCGAACAAAGGTCGTCTTCGGGCTCATAGGATTCGAACTCTGGACCTATAGGTTGAAACAG TCACTTTTTACCGACACTTGTCACGTAATTTTTCCCAAATAAAAAAAAAAAAAGACATTCTAGCATTTTTTAAATACAAT TTTTCTTATTTTGGTAGAAGGGGTCATGGAAATGCTATAAGGGGAATGGTGATGGAGACAAGGATCTTGTGTTCAGAGTG GAGAGGACTCTGAAAACGCTTACTAGAGTTGAATTGGAGGTTTTTTTCGATGGCGAGAGGCCGAACAATGAAGGTTGTGA TTTGAAATTGAGAGGATCGCCTTTTCAGAGATCATGTAGCATCTACAAAGACACTGACTTGGTGGCACAGGTACAAAATT GATTTTATTGAAGTCTAGGTTCATGATTCACCAGCTTCAAAGTTTTACAAGTATCCAAATTTCATTGTATTTTTCACCAT CATAGTTCATAGTTCATTTTGAGAGTGATGAATTGAGATATGTGTGAAATTGTATTGATATGAAGAAGAGTAGACTATAT AATATATCACAACTGAAACTGAAAATTAAGTAACGAACTTTCCCTCCAAAACTAACTCCTAACTACTTCTAACTGGTTCA CTCAAACAGTTTAACAGCTTCTAACTAATTTAAGTGGTCTAACTAATTACATTCGCGAAGTCTAATACTTTCCTTCAAGT TGGGAGATAGAGATTATGAACTCCTAACTTGGAAAGAAGAAATACAAAACGTGATTAGGGAAGGGGTTTAGTTAGCAAAT CAGCTAGCTGAAACTGAGATTGTACATGCAGTAATCGAAGGAAACTAGAGGCCATATGCTCCCCGATAAAATGCACATCT ATATCCACATGCTTGGATCTTTCATGAGAAGTTGGATTGGATGCTAATGCAATTGCAGAAACATTGTCTGAGTAGACGAT AACAGAAGCAATGCCTTCACCAAAGGCATGAAACAATCGATGAAGCCACAACAATTCTGAGCGAACACGTGCCAAGGCCC AGTACTTCGGCCTCTGCTGAAGATCTAGAAACTGTTGGCTGTTTTTTTGGACTTCCAATAGATCAATGCATCACCATGGT ATACACAATAACCTTTGGTTGATTCTCTGGTGGATAAACTTCCTCCCCAATCAGCATCAGCAAAGGCAGAGACTCTCTGC CAGAGAGAGCTTGGAATTGGACACCGCAGGATGCAAGAGACCTTGGCCAGGATTGGGTTTAAGGTAGTGCAGAATTTGAG TTACTGCTTGGAGGTGAGGAAGGCGAGGCTTTGACATGACCTGACCCAATTTGTGAACCGCATATGCGATATCTGGCCTA GAAACTGAGGTACAGCCAATGAGTCTTCAACACACTGAAGGTTTGACAAGTAATTCTCCATCAGTGTCATTAAACTTGTT ATTAGGATCCACGGAACAGATTGAGGCTTGCATCCCTGTGTTGCCAGTATCATCTAGTTACTGTAAAGCATACTTTCTCT GTGAAAGATGTATGCCTTTGCTACTTCTTGCTATCTCTAGGAAAAGAAAAAACTTAAGATCTCCAATGACCTTCAATTGA AAGAGTTGTTGTAATTGCAATTGAACTTGTTCTAATACCATATTGAGAGTGATTAATTTAGTAAAGTTTGAAATTGTATT GATCTGAAGAAGAGTGCACTATATATATGTACAACTGAAGCTGAAAATTAAAAAACTAACTTTCCCTCCAAAACTAACTC GTAACTACCTCTAACTGATTCACTCTAACAGCTTATAACTAGTTTAATTCCTCTAACTAATTACACTCACAAAGTCTAAT AGTTCATATATAATTGAAATTATCTTGAATGTTGAACTTTTGTGTATGTGCGTGTGTTTGTATAATTGTATTCATATCTG GAATAGTATTATAGATACATTATGCTTAAGAATACTGAATATGAATTGAACTTCTGTTACTAAGAAGCCTGGGCTTGACT TGAGGACAAGAGTTTCGCTCTTGATTTTAAAGCTGACATTTGTGAATTATGATAGAGGATTCTCTTGGTGCCATTTTATA TGATCATAGCATATCTATATAGTACATCTGGAACATGAAGAAGAGAGGAATTAAATTTGGAAACTGAATATACGTGTATC TCTTGAAACATGATTGGCTCCCTCAGCTTGAGAGAAAATGACTACACTCTTGAACGTGCATTATTTCAGATGATCAAAAA GGTTAATTTTGAATTTGTACTTGTGTGCAGGCTAGCTTGATGTACAAGCTTCATCAACTGTATGTCAGTAGGGGTAAATT TTGCCTTACAATTTTTCCTGGGACTCTAGACAATGCTCTTGTTGTGGCTTTGTTTGTAATATTTTTGAACGGAAGAAAAT AGTATCATTGACAGACGGCATTCAATTGCTATTTATTTGAAACAGAGTTATACCAATCTTAACACAGATATGTACTCCAA ACACTAATTCACACATCAGAGTATGAGATTGGAAATGCGGTAGATTTTAATGTTTGGGGGAAAAAAATTCTTGAAGAAGC TACTAGGAGAAGCTTTTGTTGGGGAAAGTGATTTTGTGATGTTTATAATGGATTCAAACATGCTACTAATTGGTGAGTGA TAGTGAGGAAGTGCAGCAGCTAGTTTAGAGATGAGGTTACTCTACCCTTTTTAAGGATTATCTTGACCATATATCTCTAC TCAATGTGAAACTTCTCAACACACTTTCTCACGCCCAAAACTAGCTCCGATACGATCTTAGAATTCAGGTCAGGTTTAAC TCTACCTCAAAAGCTAGCTTAGAGGTGAGAGTTAATTTACCAATTTTTTTTTAAAGGTACCAAAATTAATCAGTTATGAA TTGGATTTGACAACATTACTCTATAAAAAATCATTTACAAAAAAGTCAACACTCGCATCCAAGTCCATGTTCTTTTTCAT CAACACTCTCTTCTTCGTCAACACCTCCTCCTCAACAACAAAGCAAATTATAGCTTCCATGTTGATTCTTTAAAATATTG
CDS sequence (LotjaGi1g1v0111200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATAACAATGGATGGAAAGAGAGAGGAAGAAGTAGACAAAACAAACATGGAATTGGAAACTTCAGAGTCATCGTATCC AGGATCAGGGAGTTTGCACATCCCAATTGACCTCTTCGGTTCCAAAAAACACGCCGGAGCTCCACGTGGCGTCCTCGCAT TCGCCGATGCGTTGGGTAACATACTCTTCACGGTGAACCGCCACCCACCCAATCGGAACTACAAGAAAAAGCTCTTGCTT GATGCCTCCGGCAACATCATCTTCTCCATCTACCGCCACGAGAAGGGGTCATGGAAATGCTATAAGGGGAATGGTGATGG AGACAAGGATCTTGTGTTCAGAGTGGAGAGGACTCTGAAAACGCTTACTAGAGTTGAATTGGAGGTTTTTTTCGATGGCG AGAGGCCGAACAATGAAGGTTGTGATTTGAAATTGAGAGGATCGCCTTTTCAGAGATCATGTAGCATCTACAAAGACACT GACTTGGTGGCACAGGCTAGCTTGATGTACAAGCTTCATCAACTGTATGTCAGTAGGGGTAAATTTTGCCTTACAATTTT TCCTGGGACTCTAGACAATGCTCTTGTTGTGGCTTTGTTTGTAATATTTTTGAACGGAAGAAAATAG
Protein sequence (LotjaGi1g1v0111200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MITMDGKREEEVDKTNMELETSESSYPGSGSLHIPIDLFGSKKHAGAPRGVLAFADALGNILFTVNRHPPNRNYKKKLLL DASGNIIFSIYRHEKGSWKCYKGNGDGDKDLVFRVERTLKTLTRVELEVFFDGERPNNEGCDLKLRGSPFQRSCSIYKDT DLVAQASLMYKLHQLYVSRGKFCLTIFPGTLDNALVVALFVIFLNGRK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 181 | 181 | - | – | |
| MobiDBLite | 1 | 28 | 28 | - | – | |
| PANTHER | 21 | 205 | 185 | 1.3E-66 | – | |
| PANTHER | 21 | 205 | 185 | 1.3E-66 | ||
| Gene3D | 31 | 207 | 177 | 3.4E-33 | ||
| Pfam | 37 | 202 | 166 | 1.2E-20 | ||
| SUPERFAMILY | 55 | 202 | 148 | 5.75E-23 | ||
| Phobius | 182 | 204 | 23 | - | – | |
| TMHMM | 182 | 204 | 23 | - | – | |
| Phobius | 205 | 208 | 4 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0111200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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