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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0111800 |
| Transcript ID | LotjaGi1g1v0111800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY transcription factor; TAIR: AT2G38470.1 WRKY DNA-binding protein 33; Swiss-Prot: sp|Q6IEQ7|WRK24_ORYSJ WRKY transcription factor WRKY24; TrEMBL-Plants: tr|A0A151U0U5|A0A151U0U5_CAJCA Putative WRKY transcription factor 33; Found in the gene: LotjaGi1g1v0111800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:17413050..17418026) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAAATACTCTAACAATGTACATGGTGGCAAATTTTCCACGGTCAAACTATCCTTTCATTTCACAGCTTCTTAGAAA TATCCTCCTCCAATAGAAACCAAAGCCTTGTGCAATACGTACATCACCCTTTGTTTTTCCTTCAAACTCTTCACCTTCTC CTTTTTTATATTAATCTCTTCCATCTCTCAACACCAAAGCTTTTTTCTTTCCACACACAACAACAACAACAACAACAACT TCTTCATTGTTCTTCTATATATCTTATGGCATCTTCTGGTGGCAGTTTAGACACTTCTGCAAGCTCTTTCAATAACTTCA CTTTCTCAACACACCCTTTCATGACCACATCTTTTTCTGATCTTTTAGCTTCTCCTATTAGTGAAGACAAGCCTCGTGGT GGCTTGTCAGATCGTATAGCTGAGAGAACTGGTTCTGGGGTGCCAAAGTTTAAGTCTACACCTCCTCCTTCTTTGCCTCT CTCACCTCCTACCATTTTTTCTCCTTCTTCTTACTTTGCTATTCCTCCTGGTTTGAGCCCTGCTGAGCTTCTTGACTCTC CTGTTCTTCTTAACTCTTCCAACGTGAGTTTTCTCTTCCCCTCTTCTTGCTTTGTTTGTAGCTTTTGGTCTTGTTGACGC TCCGTTTATGTTTGGAAATTCTTCTACAATTTATTTTGGATCCAAGGAGAAGCTTTTGAGAGCAGTTTTCCGTGTTTCAG AATTGATTATGAGAAAAGAGAAATTAATTTTCATTATTTCTATAAGAAAATTTTGAGTTTTTAAGTTTTATAATTGATTC TGATAAAAGAGAAAACGATATTCATTTCTATAAGAAAATTTTGAACAAAGGAAAGTGAAAGAGCTTTGAAGTCTTTATCT TATTTTTTGTTTTTTCAAATTAGGTAATTGAGCATGAGTTGACTTGGTGATTTGATTATCTTAGATATTTGTTAAGTGGG TTAGGTTTTAAGCAAGAGAATTGCTTTGAAGTTTGAACATGCTTGAGATTTTCTCTTTTTGCTGCTTGGTTTTGTCTTGT GGTTTGTGATTCTTGTCTCATTTACTTCTTGAAATGAATTAATTGTTATGTTTCCCTTTGTGTTTTGTCAAAAACAGATT TTGCCATCTCCAACAACTGGAGCCTTTGCTGCTCAGAGCTTCAATTGGAAGAGCAGTTCTGGGGGAAACCAGCAAGTTGT CAAAGAAGAAGACAAAAGCTTCTCAAATTTCTCTTTTCAAACCCAACAAGCACCTCCTCCTGCTACAACATCCACAGCAA CATATCAATCTTCAAATGTTGCATCACAAACAGTATGTCACCAATTACAATATGCATAGACTCTTTTTTACAAATCCTTT GTTTTTGTCTCTAAAATGTTCAACTTTTCATGTAACAGCAGCAACAACAGCCATGGAGTTATCAAGAAGCCACAAAACAA GATAGCATGATGATGAAAACTGAAAACTCTTCTTCAATGCAGAGTTTTTCCCCTGAGATTGCTAGTGTCCAAACAAACCA CAACAATGGTTTTCAATCAGATTACAACAATTACCAACCACAACAACAACAACTGCAACCTCAGACCTTAAACAGAAGGT CAGATGATGGGTACAATTGGAGGAAATATGGACAAAAACAAGTGAAAGGAAGTGAGAATCCAAGAAGTTACTATAAATGT ACATACCCCAATTGCCCTACAAAGAAGAAGGTTGAGAGGTCTTTAGATGGACAAATTACTGAGATAGTTTACAAGGGTAC TCATAACCATCCTAAGCCTCAAGCTACTAGGAGAAACTCATCATCTTCCTCTTCTCTTCCTATTCCTCATTCAAATCATA TCAGCAATGATATCCAGGATCAATCATATGCCACCCATGGCAGTGGACAAATGGATTCGGTTGCAACCCCGGAGAACTCA TCAATATCAATAGGGGATGATGATTTTGAGCAGAGTTCTCAAAAGTGTAGATCAGGAGGAGATGAATTGGATGAAGATGA ACCTGATTCTAAAAGATGGTAAGTTTTTATGCTGTCACTTTGCATTATAATTAGGACTATTAGCATGTAAATCAGTAATG AAGGTCAGAAGCTAGTCCCTAGAATTGATTCCGACATCAGAATCAATTGTAGAAATGTTTCTTAAGTAGTCATTCTTCAT ATTATCATTTTTATGGTTCATCCATGGTTAATTTTTGCATAAATTTTCCAGGAAAGTTGAAGGTGAAAATGAGGGTATAT CAGCCCCTGGAAGTAGAACAGTGAGAGAACCCAGAGTTGTGGTTCAGACCACCAGTGACATTGATATCCTAGATGATGGT TACAGATGGAGGAAATATGGGCAGAAAGTTGTAAAGGGAAATCCAAATCCAAGGTATAAATTACTAAAAATACTCTAGGT TTTACTTTGTTCCAAAAGATTAACTTTAAAGTTCAATTAAGAAATAGGAGTTTGAGATTCCCAATTTGGAGTTCCACACT ACCATGCTATTAGTTATATACAATTCTTAACTGATGTGTTTAGATACCACTCGAGTGTAATGTAAACAATTTTCATCCCA CAAATCCATAAGAAATGTTCTATTCACTTTTTATCTCGGAGTGATGTTTGCACTGGTAGTCTAGTACTAATGAGTATCCA AAGATAGCCTCAAGTGTGATATAAAAGTCACTGAATAATGGATGCTATTTTTTTTTACCTATCTTTATGGGTACATTAAT TATAGCTGTTTAGCATAATAGCTATCTTTTTGGTGAAATTCGATAAGATGCTCTACTTGTACCTGTTTTCCTTGCTTGTC TAAAATTTCATCAAATTTGATAACTTTGCTTTTCCTCATGTGTGCATGTGATGGAAAAGAAGAATAATAGCACTCAGTCT CAGAAAATCTTATGTTCCCAAAATGTGTCTTTTTCTCAGTTGGAAATATGTCAATTGGAAATGATCATGCATACATCCTA GATTTTCTTGTCTGATTGTGTTTTTGGTTATAACTTGCAGGAGTTACTATAAATGCACACACCCAGGATGTCCAGTGAGG AAGCATGTGGAGAGAGCTTCACATGATCTAAGAGCTGTGATCACAACATATGAAGGAAAACACAACCATGATGTCCCTGC GGCTCGCGGAAGTGGAAACCACTCTGTCACTAGACCCTTACCAAACAACACTGCAAATGCTATAAGGCCCTCATCAGTGA CCCACCAGCACCACCACAACACTAACAACAACTCTCTTCAGAGTCTAAGACCGCAACAAGCACCTGATCAAGTGCAATCA TCTCCATTCACCCTTGAGATGCTGCAGCAGAACCAAGGAGGCTTTGGATTCTCATCAGGGTTTGGAAACTCAATGGGGTC TTACAACATGAATAACCAGCAACAACAACAACTACCTGACAATGTTTTTTCCTCCAGAGCCAAGGAGGAGCCTAGAGATG ACACTTTCTTTGATTCTTTGCTATGCTGATTTTTTTCCCATTAGTAATGGAAGGTTGAAGGGGAGCCTTGTTGCAACAGT AGGATTCAAATCCTGGAAACAGTCTCTTGTGTGAAAAACAAGATAAGAATGCGTACATTAGACCATCTAGTTGGACTGTT CTACGGACCCGCACATAGTGGGAGCTTTAAAACAGTGCCTTTTTGTTCCATTAGTATGGAAGGTTGGAAATCTTAGAAAA GGGGGTTTTAGAAACTTAGACAAATAAAGTTCATTCGATTTATTGCATTTTTTATTTTTGGTTTGTTTTGTTGTAAATGT ATACGGGCAAAGGATTGGTAAAGTATATATCTCATTATATGCTACACTACACATGTTGTTTGTGCAATTTTTTCATTACT TTGGAGCTTCTCTTGGCTTTAGTTGGGAAAATATCCATGTATTTATCTTTTGAAACTTTCACAAGAAATGCATACATGTA CACTAAACTACTCCATGTCTGTTGTGTTTGCATATATAATGAGCAATTCAAGTATAATTCCCTTTATGTTAGTAGATTGT AATTTAAAATCCTGTATATAGCTCCGTACTTGTAGGTAATAATTTATAATTCTTGTAGGTAATAATTTATAATTTATGGT CTATAAACATGATGGGACTAAGATTTCACTGGAAAATATGTTGAAAAGGGAGGCTTTGCCTTTAATGGTGGAAGGTTCAT GTATGACTGGATTTGTACTAATTGGATGCCATAGTCAAATATGGGTGCTGGATTTGTTTGGTGGGAAAGTCAGGTCAACT TTGGTGGTTTGCTACATTTTTTTCCTTCTTTTTTTTTTTTTTGGTCAATCCTTCTTTACTTAAACATGTGGATGTTTCCA GGTTGCCACCCCTATGGCCCTATCTATTATCCAAGTGGGGCAATCATCAATGTTGTCTTATGCTGGTGAAAAGACATAAT TACCCCTTGTACCGGATCCAAGTACAAAGAATTGAAAGCCAAATGCTGAGAAGAGGGAAGGTTTTGGCAAAGGGTATTTT TTTTTAATTTTTGCAGTTTTGTTTAATGTGAGCTGTGTTATTGAAGGACAAGTGGTGTGAAAGTGGGAGTGAGACATTAA CGTGAGGCACACGCTGCTCTTTAGGCTAGAAACCAAATGGTAAGGATTGGTTTGTCTTCACCTCATTGTCAATTTGTCAT GGAGCCACACATGACGTGTTTCTTTTTTTGCCTATATACTTGCCGACCTTGCATACTCCTAGAGTTCATCCATTTTTGCT TCGTACATGAAGAGTAATAAACAATTGAAGGAAGGATAGGGAGTGGGCGTGAGCTCGCGCTGACATTTTAATATTTGTTT CTTTGTACAAGTACTATTTATTAAAATTTGAGAGATTTAACTCAATCCAAAAATTAACATAAAAAATAAATGTTTTATTT TATATAAAGATTATCTATGTCTCATCTCTAATCAATGTGAGACTTCTAAAATTCCATTACGCTAAAGTTGGACATCGGAA GCTTGGAATTTGTAGGA
CDS sequence (LotjaGi1g1v0111800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCTTCTGGTGGCAGTTTAGACACTTCTGCAAGCTCTTTCAATAACTTCACTTTCTCAACACACCCTTTCATGAC CACATCTTTTTCTGATCTTTTAGCTTCTCCTATTAGTGAAGACAAGCCTCGTGGTGGCTTGTCAGATCGTATAGCTGAGA GAACTGGTTCTGGGGTGCCAAAGTTTAAGTCTACACCTCCTCCTTCTTTGCCTCTCTCACCTCCTACCATTTTTTCTCCT TCTTCTTACTTTGCTATTCCTCCTGGTTTGAGCCCTGCTGAGCTTCTTGACTCTCCTGTTCTTCTTAACTCTTCCAACAT TTTGCCATCTCCAACAACTGGAGCCTTTGCTGCTCAGAGCTTCAATTGGAAGAGCAGTTCTGGGGGAAACCAGCAAGTTG TCAAAGAAGAAGACAAAAGCTTCTCAAATTTCTCTTTTCAAACCCAACAAGCACCTCCTCCTGCTACAACATCCACAGCA ACATATCAATCTTCAAATGTTGCATCACAAACACAGCAACAACAGCCATGGAGTTATCAAGAAGCCACAAAACAAGATAG CATGATGATGAAAACTGAAAACTCTTCTTCAATGCAGAGTTTTTCCCCTGAGATTGCTAGTGTCCAAACAAACCACAACA ATGGTTTTCAATCAGATTACAACAATTACCAACCACAACAACAACAACTGCAACCTCAGACCTTAAACAGAAGGTCAGAT GATGGGTACAATTGGAGGAAATATGGACAAAAACAAGTGAAAGGAAGTGAGAATCCAAGAAGTTACTATAAATGTACATA CCCCAATTGCCCTACAAAGAAGAAGGTTGAGAGGTCTTTAGATGGACAAATTACTGAGATAGTTTACAAGGGTACTCATA ACCATCCTAAGCCTCAAGCTACTAGGAGAAACTCATCATCTTCCTCTTCTCTTCCTATTCCTCATTCAAATCATATCAGC AATGATATCCAGGATCAATCATATGCCACCCATGGCAGTGGACAAATGGATTCGGTTGCAACCCCGGAGAACTCATCAAT ATCAATAGGGGATGATGATTTTGAGCAGAGTTCTCAAAAGTGTAGATCAGGAGGAGATGAATTGGATGAAGATGAACCTG ATTCTAAAAGATGGAAAGTTGAAGGTGAAAATGAGGGTATATCAGCCCCTGGAAGTAGAACAGTGAGAGAACCCAGAGTT GTGGTTCAGACCACCAGTGACATTGATATCCTAGATGATGGTTACAGATGGAGGAAATATGGGCAGAAAGTTGTAAAGGG AAATCCAAATCCAAGGAGTTACTATAAATGCACACACCCAGGATGTCCAGTGAGGAAGCATGTGGAGAGAGCTTCACATG ATCTAAGAGCTGTGATCACAACATATGAAGGAAAACACAACCATGATGTCCCTGCGGCTCGCGGAAGTGGAAACCACTCT GTCACTAGACCCTTACCAAACAACACTGCAAATGCTATAAGGCCCTCATCAGTGACCCACCAGCACCACCACAACACTAA CAACAACTCTCTTCAGAGTCTAAGACCGCAACAAGCACCTGATCAAGTGCAATCATCTCCATTCACCCTTGAGATGCTGC AGCAGAACCAAGGAGGCTTTGGATTCTCATCAGGGTTTGGAAACTCAATGGGGTCTTACAACATGAATAACCAGCAACAA CAACAACTACCTGACAATGTTTTTTCCTCCAGAGCCAAGGAGGAGCCTAGAGATGACACTTTCTTTGATTCTTTGCTATG CTGA
Protein sequence (LotjaGi1g1v0111800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSGGSLDTSASSFNNFTFSTHPFMTTSFSDLLASPISEDKPRGGLSDRIAERTGSGVPKFKSTPPPSLPLSPPTIFSP SSYFAIPPGLSPAELLDSPVLLNSSNILPSPTTGAFAAQSFNWKSSSGGNQQVVKEEDKSFSNFSFQTQQAPPPATTSTA TYQSSNVASQTQQQQPWSYQEATKQDSMMMKTENSSSMQSFSPEIASVQTNHNNGFQSDYNNYQPQQQQLQPQTLNRRSD DGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGTHNHPKPQATRRNSSSSSSLPIPHSNHIS NDIQDQSYATHGSGQMDSVATPENSSISIGDDDFEQSSQKCRSGGDELDEDEPDSKRWKVEGENEGISAPGSRTVREPRV VVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGNHS VTRPLPNNTANAIRPSSVTHQHHHNTNNNSLQSLRPQQAPDQVQSSPFTLEMLQQNQGGFGFSSGFGNSMGSYNMNNQQQ QQLPDNVFSSRAKEEPRDDTFFDSLLC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 37 | 74 | 38 | - | – | |
| PANTHER | 47 | 583 | 537 | 6.1E-242 | – | |
| PANTHER | 47 | 583 | 537 | 6.1E-242 | – | |
| MobiDBLite | 145 | 191 | 47 | - | – | |
| MobiDBLite | 209 | 239 | 31 | - | – | |
| MobiDBLite | 209 | 243 | 35 | - | – | |
| Gene3D | 225 | 299 | 75 | 1.2E-28 | ||
| SUPERFAMILY | 238 | 298 | 61 | 1.57E-25 | ||
| SMART | 239 | 297 | 59 | 1.4E-36 | ||
| ProSiteProfiles | 240 | 298 | 59 | 23.778 | ||
| Pfam | 240 | 296 | 57 | 7.1E-26 | ||
| MobiDBLite | 289 | 392 | 104 | - | – | |
| MobiDBLite | 298 | 354 | 57 | - | – | |
| MobiDBLite | 355 | 383 | 29 | - | – | |
| Gene3D | 397 | 472 | 76 | 1.9E-35 | ||
| SUPERFAMILY | 403 | 471 | 69 | 1.23E-29 | ||
| ProSiteProfiles | 406 | 471 | 66 | 38.147 | ||
| SMART | 411 | 470 | 60 | 1.2E-39 | ||
| Pfam | 412 | 469 | 58 | 9.2E-26 | ||
| MobiDBLite | 467 | 524 | 58 | - | – | |
| MobiDBLite | 480 | 524 | 45 | - | – | |
| MobiDBLite | 539 | 563 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi1g1v0111800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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