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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0113600 |
| Transcript ID | LotjaGi1g1v0113600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT3G50710.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9SCQ5|FBD10_ARATH Putative FBD-associated F-box protein At3g50710; TrEMBL-Plants: tr|A0A072VLH8|A0A072VLH8_MEDTR F-box/RNI/FBD-like domain protein; Found in the gene: LotjaGi1g1v0113600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:17795556..17798443) extracted from Lotus japonicus Gifu genome v1.2.
CTTCACTTCTTCTCCTCGCCGCTGAGTCCAATCTCCGCTCAGGTGAGTCAAAATGCGGAAGAAAATGCGAAAGAAAAATC AGCCGAAGAAAACACCGCCGATAGAAGATCGGATCAGTGCCTTACCGGACGAAATCCTCAGCTACATCCTCTCATTTTTT CCAACCAAATTTGCATTCACCACCAGTGTCCTCTCCAAGCGGTGGAACTCAATCTGCAACTCCCTCCCCGTGCTCCACTT CGATTTCCAAGCCGAAAATGACATAGAGGCCTTCATCCTCTTCTGCCGCTTCGTCGATAATGTTCTCCTCTCCCCGCATG TTCAGGACCAACCAATCGAAACGCTCTCCATCGCCTGTAAGCTCCGCCTCCCCGGCTGTCCCCCGTTCAACGCGGAGGTG TGGATCGAAGCCTCGAAGCGTCGCCGCGTCGTGAATCTCCATGTGTCGGCGGGGTACTTTTCCATTCCGCCAAGCGTTTT CACCTCCCAAACCCTCGTGGTTCTGAAGCTGATCGGTGTAGAAATCGATCATGAAGTTGGGTCTGTTGAACTTCCCTCCG TCACAACCCTTCATTTGATTGGTGTTTTCTTTAAAAAGAAGGATGACGTGAAGAAAGTTCTTAATGCATGTCCTGGTGTA GTGGATTTGCACGCTACAACTTGCAGTGAGTACCTTCTCTGTTACACTACAGGGTATAAAATCATGCCCAACGTCGTGAA AGCAAAGATTCGCACATACAATGTTCCTTTCAGTGCAATTTACAATGTCGAGTCTCTTAGCATTCAAATGGTATGAAAAT CCGGATCTTTTTGAATTGTAATAGTCCCAATCGCAATTTAAAATCATGATGATTAATATATGATAGTATAAGTTCTTACT TACTTGTTAATCAATTTCGTTTTTAAGATATTGGTAATTTTTGCAGGTGAATCGTAGGCCTAAAGACCAATACATCGATT CCTACCACAGAGCAATGCCCGTGTTTCAAAACTTAATCAGCCTTGAGCTAAGCTTTTATCTCTTTCCTAGCTGGGTTGAG GTGGTGGAAGTGCTCCCTTATTGTCCCAAGCTTCAATCTCTTGCCATTGATAAGGTTTCTAGATTTTCCTGTTAATTTAT GGATCATTGTGTTAAAAAATAGAAAATAAATTGGGTTGTGAACTTAGCCGTGGCTTTCATCCATTATATAGAGCAAGTAC ACATGATAGTTGGAGATGGATTAGTGATTCTCCACACATTACAAATGCCATATCTAATGCCTATTTATAGGCTTTAAATG ACCGACTCTTAGTGTCGGTAGTATATTTTTTATTCATTAGTTATTCCTAGATTATGAAGCATCTAGACATAGGCTAGTAA TTAATTGTTTCTAGTATTTTCTAAGACCATAAGGAAATTTGTATCACATTTTAACACTCCTCCTTGATGCAAATTTCTCC AAACTCCAAGTATAGTTTGTAGGTCTTCAAATCTTGCTCTTGGCAAGGCTTCTGTGAATATATATGCTAACTGCTCTTCA GCCTTGCGCTGTAGTGTGTGTTTGGAAAACTTCTGCTGGTCCACGTTTGGCTCCGATCCACGTTTGCAAAAGCAAGAAAT AGTTGCTTTTGAATTTCTGGATCCACGTTTGGCCTCTCCAGATTTGAAACCAAACACACACGTAGTCGAATTGAACTGGA TCTCTTTAGTTGTATTTGCTTCCACCGTTGATGGTGCAATTTTAGCTGGCTTCACGTTTGAACCATTCTTCTTGCCTCCA ATCCATTGATGTGAGACTTGTTGTTGGATATTTCATCACTCTCATCAAATCCAACTAGAGTCATTTTGTTGGATTTGGAT TGCCTGGGCTTGTATTCAAGCGGAACCTCAGAAGTCGTCGTCATAGTCAGGTTGTTGCTCCTTCTAGATGAACTTGAGTC TCGGAGGCCCGTTGCTATTTTTTCTAGATAATAGATTTCACCAACAATAGAGATGGTGATAGATGAAGGTCGAGTGATAT TAGCCATAGCTTAAAAAAGGTATAGAGGTGGGTTAAAAGTGCAAGGGTAGTTTTTAAAATAGTAGGTGAGTAGTATCACT ACGTCCAGTGTATGACCGAGCGCAGCTCTGATACTACTGTTGATAATTGAAATAGTTGCATAGATCAGAATGGGAAATAC ATAGAAATAGATATAAGTTGTGTGGCTTTTACTCATGGTGCATAGCAGAGTGCATTGGGTCGAGAGGATTTAGTGTTCCT CCACACAATACAAATGCATGCCATATCTAATGCCTTTTTATAGGCTTTACATGACCGACTTTTAATGTCGGTAGTATATT TTTTATTCATTAGTTATTTCTAGATTATGAAGCATCTAGACATAGGCTAGTAATTAATTGTTTCTAGTATTTTCTAGGAC CATAAGGAAATTTGTATCACATTTTAACACATTGTTGTCTGTGCATATCATTTCATAAATCTTAATTTTTTGTGTGTATG TTTAACAGGTATCTAATGAGCTAGGTTATCAAAAGGATTGGGAATACACAAAACCTGTTCCAGAATGTGTTTCGTTACAT CTTAGAACCTGCTCTATTCGAAACTATCGAATGAAAGACGAATTTGATGATTTTAATTTTGCAGCATATATCCTACAACA TGCGAGGGTTTTACAAGTGCTATCCCTTCATATTAGCACTTACTGGGACCAATCTGAGAGGGACTGGCTTTTCGAACATT TAACCCAGTCGTGCCCGAGTATCTCTCCCGCATGTAAAATTGAATTGGAGACTTGGAGTCCTTCGAAAGAATGAGTTTTA TTGTTGTTTTGTCTAAACATATTAAACTGAATGGTGTTAATTATTTTGTTCTGCGAACCTCCTGGATGGATATTTAGTGT TATATTTT
CDS sequence (LotjaGi1g1v0113600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGGAAGAAAATGCGAAAGAAAAATCAGCCGAAGAAAACACCGCCGATAGAAGATCGGATCAGTGCCTTACCGGACGA AATCCTCAGCTACATCCTCTCATTTTTTCCAACCAAATTTGCATTCACCACCAGTGTCCTCTCCAAGCGGTGGAACTCAA TCTGCAACTCCCTCCCCGTGCTCCACTTCGATTTCCAAGCCGAAAATGACATAGAGGCCTTCATCCTCTTCTGCCGCTTC GTCGATAATGTTCTCCTCTCCCCGCATGTTCAGGACCAACCAATCGAAACGCTCTCCATCGCCTGTAAGCTCCGCCTCCC CGGCTGTCCCCCGTTCAACGCGGAGGTGTGGATCGAAGCCTCGAAGCGTCGCCGCGTCGTGAATCTCCATGTGTCGGCGG GGTACTTTTCCATTCCGCCAAGCGTTTTCACCTCCCAAACCCTCGTGGTTCTGAAGCTGATCGGTGTAGAAATCGATCAT GAAGTTGGGTCTGTTGAACTTCCCTCCGTCACAACCCTTCATTTGATTGGTGTTTTCTTTAAAAAGAAGGATGACGTGAA GAAAGTTCTTAATGCATGTCCTGGTGTAGTGGATTTGCACGCTACAACTTGCAGTGAGTACCTTCTCTGTTACACTACAG GGTATAAAATCATGCCCAACGTCGTGAAAGCAAAGATTCGCACATACAATGTTCCTTTCAGTGCAATTTACAATGTCGAG TCTCTTAGCATTCAAATGGTGAATCGTAGGCCTAAAGACCAATACATCGATTCCTACCACAGAGCAATGCCCGTGTTTCA AAACTTAATCAGCCTTGAGCTAAGCTTTTATCTCTTTCCTAGCTGGGTTGAGGTGGTGGAAGTGCTCCCTTATTGTCCCA AGCTTCAATCTCTTGCCATTGATAAGGTATCTAATGAGCTAGGTTATCAAAAGGATTGGGAATACACAAAACCTGTTCCA GAATGTGTTTCGTTACATCTTAGAACCTGCTCTATTCGAAACTATCGAATGAAAGACGAATTTGATGATTTTAATTTTGC AGCATATATCCTACAACATGCGAGGGTTTTACAAGTGCTATCCCTTCATATTAGCACTTACTGGGACCAATCTGAGAGGG ACTGGCTTTTCGAACATTTAACCCAGTCGTGCCCGAGTATCTCTCCCGCATGTAAAATTGAATTGGAGACTTGGAGTCCT TCGAAAGAATGA
Protein sequence (LotjaGi1g1v0113600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRKKMRKKNQPKKTPPIEDRISALPDEILSYILSFFPTKFAFTTSVLSKRWNSICNSLPVLHFDFQAENDIEAFILFCRF VDNVLLSPHVQDQPIETLSIACKLRLPGCPPFNAEVWIEASKRRRVVNLHVSAGYFSIPPSVFTSQTLVVLKLIGVEIDH EVGSVELPSVTTLHLIGVFFKKKDDVKKVLNACPGVVDLHATTCSEYLLCYTTGYKIMPNVVKAKIRTYNVPFSAIYNVE SLSIQMVNRRPKDQYIDSYHRAMPVFQNLISLELSFYLFPSWVEVVEVLPYCPKLQSLAIDKVSNELGYQKDWEYTKPVP ECVSLHLRTCSIRNYRMKDEFDDFNFAAYILQHARVLQVLSLHISTYWDQSERDWLFEHLTQSCPSISPACKIELETWSP SKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 18 | 68 | 51 | 9.312 | ||
| Gene3D | 18 | 59 | 42 | 9.1E-7 | – | |
| PANTHER | 19 | 377 | 359 | 2.3E-54 | – | |
| SUPERFAMILY | 19 | 66 | 48 | 5.63E-12 | ||
| PANTHER | 19 | 377 | 359 | 2.3E-54 | – | |
| Pfam | 20 | 60 | 41 | 1.6E-6 | ||
| SMART | 24 | 64 | 41 | 1.9E-5 | ||
| Gene3D | 89 | 389 | 301 | 1.5E-6 | ||
| SUPERFAMILY | 103 | 304 | 202 | 2.12E-6 | – | |
| Pfam | 318 | 361 | 44 | 3.3E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0113600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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