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LotjaGi1g1v0113800.1

Overview

Field Value
Gene ID LotjaGi1g1v0113800
Transcript ID LotjaGi1g1v0113800.1
Lotus japonicus genome version Gifu v1.2
Description FBD-associated F-box protein; TAIR: AT1G32375.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9LQM1|FBD39_ARATH Probable FBD-associated F-box protein At1g32375; TrEMBL-Plants: tr|G7J2D6|G7J2D6_MEDTR F-box/RNI/FBD-like domain protein; Found in the gene: LotjaGi1g1v0113800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:17834321..17839903) extracted from Lotus japonicus Gifu genome v1.2.

TCATATTGGGGGACAAGGGGAAGACCACTTAGCCCAAGTCCAATAGTCTCGTCAGTTGTGGGTTCAAGATCACCTACTTG AACCGTGAGTGGGCTTCTCAAAGGCCCAACAATATCCCCACAAATTACTTCATTATTTTTGTTTGCTAGGGTGGGCTCCA AAGGAGGTTTTGGGTCAATAAACTCCTCTCCTAATAGCTGTAACCCTACTTTATTCAAAATATGTGGATGTGTCTCTATC TGACCCTGACACCTTGCCTGCAGATCCATAGTTGACTCTGTCTCTGCCTCCTTGTTTGACAAAGTCCCAGACTATACCCC TATGTTCCTGGAAGTGTGACAATCTGTAGCTGTTGACGTCCTAGGTACGATCTTCACCGTAGCCTCTGCCGTATGTAGCC ACCGTCCACTCCGATCGCCATAGTCGTCCCCTTCAATCTCGCCTGGTTCGAAAGAATACAACGATTCCATCTCCAGAAAA TCCTGAGACCAGAGCGACGAATCAATCTCTTCATCGTAGGTGGAAGTACAAGCCTTGAAAATCTCAAAGCCTAGTTGTGT TTCTTAAACCAAACGAATAGCAAAGTATTCTTCGTTCAGTTTTACAAGTTTGGAAAGGAAGATTGGCTCCAGATTTGTAG TTCTCACTCTCAGTCTTGCAAATTCCACCCTATTGAAGGAGGAGGTATCCTCATCAACATTCAGTAGCTTTCCAGTTTCA GAAACCAGCAAACTAAAACTTTGACAGATCCAGAGATGCAGGGGAATGCCAAAACAGCGTATCCAGGCCACTATATGCTC TGAAATCTGCCTAGTCTCCAAGGGAAGAGTTCCTCAAAGAGAGGGTCCAACAGTTCTTTCAATCCCTTTAAAGTATCTTG AATTTCTTCATCATCCTCTCCAGTCAGTAAAACATGTAAATCCCCCAGGTATCTCACTTTGAGTGAAAGACAACCATGTT GCAAGAAGTTTTGTTGAATAATGTTTATGCTCTCTAAGCGTCTCAATTTTCCTACCTTGCTTTTTGCAAGCCAACTCTGG GTGATGCCTTCTAGCTTGAACCCTTTGCTCTGCCATACATGACCTTGCTGCAGTGGAGCAGGAGCTTCAGTCTCTGAACG AACACCCTTCATCTCCTTTTGCCCGTCACTATAAATAGCCCCTTTCCTAGTCTCGAGCCCTTGTATCAGGGCATCTCGAT AAGAGCCCTCCTTAAAGCCTTGTGGAACTCTTGGACGTGAGAAAAGAGTCTGCCCTTGCCCCTGAGTCATTTCTGATTTC TGAAAGGAGAAAGGCTTCCAGTTCTCCTTGTGTTTTAATACTCCCGGTTGTCTGTTGAATCTTGGAATATTAACATGCAG CTTCTTATTGCCAATGTATAACGTGTCTAATTCCCAAGCAAGCGAAGATGGATCCTCCACATCAGAAAATCTAACGAAGT CGAATCTGTTGCCAAGCTTATCCCTTTTGTTAGGAATGAAAACCTCAGTTATCCTACCCCAAGCTTGGAAAAACCTCCAC ATTTCAACTTCCCCATAATTGTCTGGGAAATTTGAGAAGTAAAAGGAAGAAATTATACCCTGTTTTTTGTGTCTCCGCCC TTCCACTCTCTTCCAGCCGTCCTCTCCCCTAGGTCGGTTAACGTTGTCCCCCCAGCCCCGTGTTCTCTCCCTTGCATACC TCCTCTCTGCCACCCCTCCCCTCTCTCTCTACCTCTCTCTTTCTCTCTCATGTTTGACTCATTGGCATAGATGCTACTTA GGAAGGAGGTTCATTGCTGAGAAATATATCACATGTACATGGAGACCCGTACTTTTTCTCTTCAATTCATATTTCTTTTA TTGGGGATGAGTGTGAAAATAAACAATCTAGACAACTAAATACATTGTCCCACTCACTTACACAAACTTTTATGGCAGCT TTTGCTCTCAATTGTCTATTAATAGGGCTTGCAGACGTCATTTTCCAAAACCCTTCTTCATCCAATCTCAGTTCCGCTGA GTCATATTCTTCTTCATCTTCTCCAAAATGAGGAAGAAAAATCAGCCGAAGATAGAAGATCTGCTCAGCGCCTTACCGGA CGAAATCCTCCGCTACATCCTCTCATTTCTGCCAACCAAATTCGCATTCACCACCAGTGTCCTCTCCAAGCGATGGAACT CAATCTGCTACTCGCTCACCGCCCTCCATTTCGACGACAAAGCCGAAGAAGACGAAGAGACCTACACCCGCTTCCGCCGC TTCGTCGACAATGTTCTCCTCTCCCCGCGTTTCCAGCACCACCCTATCGAGACGCTCTCCATCGTGTCTCACTCCGAGCT CAGCCGCAACCGTTGCCGGTTCAACACAGACGAGTGGATTGAAGCCGCGAAACGGCGTAGCGTCAAGAATCTCCAGCTGT CCACAGTATGTTCTCAATTATGCTTGTTGCCCGGTATTTTCACTTCCTCCCAAACCCTTGTGGTTCTGAAGCTTACTGGG ATAGTCATGGATCATGGTGTTGGTTCTGTTGATCTTCCCTCACTCAGAACCCTTCATTTGAATCATGTTTTGTTTGATCA AAGGGACGATGTGATGAAAATTCTTAATGGGTGTCCCATTGTTGAGGATTTGACTGTATTAACTCCCAGTTTTGAGTGTC CCATTGTTACTGGAGGGTTTAAAACCTTGCCCAACTTGCCCAAGGTTGTGAAAGCGCATATCAACGCATTTGATGTTCCT TTCAATGCAATTCCTAATGTAGAGTTTCTACAAATTGAGGATGTAAGAAAATCATGATCAAGATGATAAGTTCTTACTAA TTACTTCTTATATTCATTCAATTTCATTTTGAGATCGATATTCTTGGTATAATTTTGCAGATGGAGCGTAGGTGCCCTGA CGTATATATCGAATCCTACTACAGAGAAAAGCCCGTGTTTCGAAACTTAATCAACCTTAAGCTATCCTTTGTTTGCTTCC CTGGCTGGGTTGGTGTAATGGAAGTGCTCCCTTATTGTCCCAAGCTTCAAACTCTTGACATTGAAAAGGTACGGTATCAG GCGGTTAATTTATGGATCATTTTTGTTTGTGCTGATCTTTTCATAAATCTTGATTTTGTCTATGTTTAACAGCTTGTGTA CTGGCATAATTACCAAGAGAAATGGGCACATACAAAAGAACTTGTTCCAGAATGTGTTTCATTACATCTTACAACATGCT CTATTGGAAACTATCAAATTAAAGGCATGTATGATGATTTTGATTTTACAGCATATATCCTACAAAATGCAAGGGTTTTA CAAGTGCTGACCCTTCACATTAACCGTCACTCGGATGAATCTGAGAAGGACCGATTTTTCAAACGTTTATCCAGGTGTTC GAGGATCTCTCCAGCATGTAAAATTGAATGCATATTCGTTCCTTAATTGTCTGTTGCTTCTAATAATATCTTCTACCTAT GAATGCAACTGATGGTTTGATGGACATGGTTATTTGTCTCCTTTTACAAATTATGAAGGACTCCTATTTGAAGTTTTCAG TCTTTTACCTTATGAACCTCATGAATATGTTTAACTTTTTTCCTATGAACTTATATTTAGTCATTTTATATTTGATTTTA ACTTGTTCTTATATGTTAGTCAATGTATGATTTGACTATTTTAGTATATGTTAAATTTTATTGATGTTTGCTTCATTGTT GAGGTTTTTAAAATGTTATTTTTGTAAGATGTAAACTCTTACAACTTTAGAGTTGAGTTTACTAGTTTTTTTTTTAATTA GCAAAATCAAGCATGTCATCTATTCCTTATTTGAAAAATTTGGAAAAGAACCATGTTCAATTGTCACCCACTCTACCCCT TTAGGACTAGAATCAGTGCTGTGAACATTCACAATTACTTTGCTTCCTTTTGTGGTTTTCTTCTGCAGCTTTTCTGTTAC AATCTTTTCTGAATTTTCTGCCACTACCTCTTTTATTTTCCTCAGACCTCCAATTTCAAATTCTGAACCTAAACTTAGTG CACCCTTCTCACAACCCTGGATGCACCAGTCTCTTTGTAATTCTTCTCATACTCACCTTCATTATTGCGTTCATCTTCTA ATAATCTCATATTTTATTCAATGTCTTCATTTTCCTCCTTTTTCTCCTTGTCTTCTTCATTAATCTGGTCTTCCACTTCC TAGGGTTCAACAATGTCATCATTCCCACCAATGCTTTGTTCCACTACCCTCTTGGGTTCACTTTCTTCTGTTTCGTCCAT CAATCCATATGGCTTATTTATCCATGGCTGGAATCCTTTTCTTCCAAGTTTTTTGGTTTCATGACTAGCCTTCAGCTTTT CAAATACTTTTGTAGAGTTGTCCTCATTAGCCTTCCTCTTATCTAGTGAATGGTTGAGCAGAAAAAGGAACCAGATGATA ACAGCAATTAAAGTAAATATTTTGAAACCTTGATTTATCATGGAACCTTTTGTCCTCTGATTTCTGTTTGGCAATTGCTT CGACATGGTTTAACACATTAAGTTCTCTACCAAGTACCAGAAACATGAACCTAAAGGAAAAGTGAGAGGATATTGTATTC TATCTATGCATCTATTGAAGATGAAGCTAAGTGGTACTATGAGACAGTAAGCAAAATATAATGGAGTGTAAATGTGTAAT AATATCTGGTGATGGATTGTGTGTTAAGTAAGTCGAGTTTACTATAGTTGACTTTACCGGCACATCACAAGTAGTTACCA TTGGTTTTTTGTATAGCAAAAAATGTATGTTATTTGTATTATTTACCCCACTACAGTTTTTGTCTGTATGTGTATTTTGC CCCCACTGACCCTGGCCGTGGGGCTTTTGTTGGGTTGATGTCATGCTGGTGAATTCCTTTTTGATTGCTATTTGTTCTCC TCAACTGTTTCCTCTTTCCTTGTTTTTTTTTTTTTCAGTAAGCCAAAATTGATATATAAATGAAGGACTATGGGTACTCC AACCATGTACAAGAAAGAAATAAATCCAGCACACTAACTAGTAGGTAGAATAAAAGAACAGAGCTCTCAACATAGCTACA TCAGCTATATAGATGCTAAAAGACCATAAAGCCTTAATGCTACATCTGAATGGAAAGAATTCTAAGAAAGAATAGCATCC AAAGATTCCAGCCGTGAAAAGGCCTTAGTGTACATCGAAGAAGAGCTGTCAAAAAACCACCAGTACTCTTGTTTCCTCTA TCCTTGTAACAAGAGGTTTCCTTCTTTTGTTTTGGTGCTGAATCTTTGTCCCACCCCATTGCTTTTGGGGTGATTTGTAC TTGGTCTGGAGAAGTTTTTCTCTGGCCTCCCTATATTTTAACAAACTTTTCTCCTTACAAAAAAAAAACAAGTCTTTTTA TGATCTATGAGCTTCTATGGATTGAGAAGATTCTAGCCAAGGTACAGATTGCAATACTCTCTATAAATCCAATGGTAACT ACTTCATAGAGATAGAAATAGTGAAACATGGTAGAGATAGAAATAGTGAAGCATGGTAACTACTAGATAGAGACAGAATA GAGAAGCTAAAGCTAGAGATAAGTGATAAATGTAATCAATATGTGGTGTGATGTGATGAGAAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0113800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGGAAGAAAAATCAGCCGAAGATAGAAGATCTGCTCAGCGCCTTACCGGACGAAATCCTCCGCTACATCCTCTCATT TCTGCCAACCAAATTCGCATTCACCACCAGTGTCCTCTCCAAGCGATGGAACTCAATCTGCTACTCGCTCACCGCCCTCC ATTTCGACGACAAAGCCGAAGAAGACGAAGAGACCTACACCCGCTTCCGCCGCTTCGTCGACAATGTTCTCCTCTCCCCG CGTTTCCAGCACCACCCTATCGAGACGCTCTCCATCGTGTCTCACTCCGAGCTCAGCCGCAACCGTTGCCGGTTCAACAC AGACGAGTGGATTGAAGCCGCGAAACGGCGTAGCGTCAAGAATCTCCAGCTGTCCACAGTATGTTCTCAATTATGCTTGT TGCCCGGTATTTTCACTTCCTCCCAAACCCTTGTGGTTCTGAAGCTTACTGGGATAGTCATGGATCATGGTGTTGGTTCT GTTGATCTTCCCTCACTCAGAACCCTTCATTTGAATCATGTTTTGTTTGATCAAAGGGACGATGTGATGAAAATTCTTAA TGGGTGTCCCATTGTTGAGGATTTGACTGTATTAACTCCCAGTTTTGAGTGTCCCATTGTTACTGGAGGGTTTAAAACCT TGCCCAACTTGCCCAAGGTTGTGAAAGCGCATATCAACGCATTTGATGTTCCTTTCAATGCAATTCCTAATGTAGAGTTT CTACAAATTGAGGATATGGAGCGTAGGTGCCCTGACGTATATATCGAATCCTACTACAGAGAAAAGCCCGTGTTTCGAAA CTTAATCAACCTTAAGCTATCCTTTGTTTGCTTCCCTGGCTGGGTTGGTGTAATGGAAGTGCTCCCTTATTGTCCCAAGC TTCAAACTCTTGACATTGAAAAGCTTGTGTACTGGCATAATTACCAAGAGAAATGGGCACATACAAAAGAACTTGTTCCA GAATGTGTTTCATTACATCTTACAACATGCTCTATTGGAAACTATCAAATTAAAGGCATGTATGATGATTTTGATTTTAC AGCATATATCCTACAAAATGCAAGGGTTTTACAAGTGCTGACCCTTCACATTAACCGTCACTCGGATGAATCTGAGAAGG ACCGATTTTTCAAACGTTTATCCAGGTGTTCGAGGATCTCTCCAGCATGTAAAATTGAATGCATATTCGTTCCTTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0113800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRKKNQPKIEDLLSALPDEILRYILSFLPTKFAFTTSVLSKRWNSICYSLTALHFDDKAEEDEETYTRFRRFVDNVLLSP RFQHHPIETLSIVSHSELSRNRCRFNTDEWIEAAKRRSVKNLQLSTVCSQLCLLPGIFTSSQTLVVLKLTGIVMDHGVGS VDLPSLRTLHLNHVLFDQRDDVMKILNGCPIVEDLTVLTPSFECPIVTGGFKTLPNLPKVVKAHINAFDVPFNAIPNVEF LQIEDMERRCPDVYIESYYREKPVFRNLINLKLSFVCFPGWVGVMEVLPYCPKLQTLDIEKLVYWHNYQEKWAHTKELVP ECVSLHLTTCSIGNYQIKGMYDDFDFTAYILQNARVLQVLTLHINRHSDESEKDRFFKRLSRCSRISPACKIECIFVP
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:1.20.1280.50
10 51 42 4.0E-7 –
ProSiteProfiles
PS50181
10 58 49 10.345
IPR001810
PANTHER
PTHR32212:SF246
11 385 375 1.6E-58 –
SUPERFAMILY
SSF81383
11 53 43 3.53E-11
IPR036047
PANTHER
PTHR32212
11 385 375 1.6E-58 –
Pfam
PF00646
13 48 36 2.7E-7
IPR001810
SMART
SM00256
16 57 42 3.7E-5
IPR001810
Gene3D
G3DSA:3.80.10.10
73 390 318 1.2E-10
IPR032675
SUPERFAMILY
SSF52047
116 383 268 6.28E-10 –
Pfam
PF08387
318 362 45 7.1E-8
IPR006566
SMART
SM00579
321 395 75 5.5E-7
IPR006566

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0113800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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