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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0113900 |
| Transcript ID | LotjaGi1g1v0113900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT3G50710.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9SCQ5|FBD10_ARATH Putative FBD-associated F-box protein At3g50710; TrEMBL-Plants: tr|G7K562|G7K562_MEDTR F-box/RNI/FBD-like domain protein; Found in the gene: LotjaGi1g1v0113900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:17907618..17909592) extracted from Lotus japonicus Gifu genome v1.2.
AAAACTCATCTTCATCTATTCTTCTGCTCTCTCTGAGTCCAAATCCCTGCTCCGCTGAGTCAAAATACGGAAGAAAACGC CGCTGATGGAAGATCGAATCAGCGCCTTACCGGACGAAATCCACCGCTACATCCTCTCATTTCTGCCAACCAAATTCGCA TTCACCACCACAGTCATCTCCAAGCGGTGGAACTCAATCTGCAACTCCCTCATCGTGCTCCACTTCGACGACAAAGCTGA AGACGAAGAAGAGGCCTACATCCGCTTCCGCCGCTTCGTCGACAAGGTTCTCCTTTCCCCGCTCGTCCAGCACCACCCGA TCGAGACGCTCTCCATCGTCTCTAACTCTCAGCTCTGCCAATACCGAAGCCGGTTCAACACAGACGAGTGGATCGAAGCT GCAAAACGACGTGGCGTTAAGAATCTCCAGCTGTCGTCAATACATCTTAACTTGCGCTTGTTGCCCGGTATTTTCACCTC CTTCAAAACCCTCGTGGTTCTGAAGCTGAGTGAGATAATCATTGAATATGGTTCTGTTGGTCCTGTTGATTTTCCCTCAC TCACAACCCTTCATTTGATTAACGTTTTGTTTCGTCAAAGGGATGATGTGATGAAAATTCTTAATGGGTGTCCCATTGTT GAGGATTTGTATGTTACAGCTCCCTGTTTTGAACTAGGCTACCCTACAGGGTTTAAACCCATGCCCCAGGTTGTGAAAGC ACATATCAACGCTTTTAATGTTCCTTTCAATGCAATTCCTAATGTAGAGTCTCTACACATTGAGGAGGTATGTAAGAAAA TCTGGATCTTTTCGAATTGCAGTTTAAAGTTATGATCAAATTCTTACTTACTTCTTACACTCATATGCCTGCATAAACTT GCTGTTACTGTCATATTCCTCGATTGTTCTTGGAAGGGTGGGTGCGGGTTTTAATATCATCAGTGGAAAGGTGTTGATCA AGTGGTTCTTGATTGCTTGTTGTGTTTTTAGCTATCTGTAAGGGATAGTGGCTGGTGTCATCGTTTGCTTCTTTGGAGTT AGTAGGTTATGTTTTTTGGTTTTCTTATCTGTACAGTAGTTGAGTAGCGGAAATTCTTCTGGTTTTTTGGTTTTATTTTG CCTAGTGCTACCTTTTGTACAAGGATTGAAATACTCCTAGTATTTCTTTTAATTCAAATTTTGCTTACCATGAAACATTT TGCAGATTGAGCGTAGGGACAAAGACAATTATATCAATTCCTACTACAGAGAAATGCCTGTGTTTCGAAACTTAATCAGC CTTGAGCTTACCTTTCCTCGCTTCCGTGGCTGGTTTGATGTAGTGGAAGTGCTTCCTTATTGTCCCAATCTTCAATCTCT TGCCATTGAAAAGGTTTCTAGTGGTTAATTTATGGATATATCATTTTTGTTTGTGCTCTTCTCGGTTTATCTTTTCATAA ATCTTGATTATTATTTGTCTGTGTTTAACAGGGTAAGTACAGGAGAATTATCGAAGATCAATTGGAACATACCATAGAAC CTGTTGTTCCAGAATGTGTTTCATTGCACCTCAAAACATGTTCTGTTAGACACTATCCGGTTAAAAGCATGTATGAAGAT TTTGATTTGGCAGCATATATCCTTCAAAATGCGAGGGTTTTACAAGTGCTGACTATTCACATGGACCCTTATCACTCAAC GGAATCTGAGAAGGACCAATTCTTCAATTATTTATCCAGGTGCCCGAGGATCTCTCAAGCATGTAAAATTGAGTGCAACT AGGTTCTAAATATCTGCTGTTTCCAATAATTTCTTCTACCCATGAATGCAATTGCTATTGTTGGATTTGAGAGGATATGG TCTTATGTCGTTATGAACATGTGTTACTTTTTTCCTATAAACTTTTATTTGTTCAATTATGTGGAATTGTTACTTTATCT TATATGATTTTCAATGTATGATTTGACTATTTAAGTATATTTTTTATTTTGTTGG
CDS sequence (LotjaGi1g1v0113900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGATCGAATCAGCGCCTTACCGGACGAAATCCACCGCTACATCCTCTCATTTCTGCCAACCAAATTCGCATTCAC CACCACAGTCATCTCCAAGCGGTGGAACTCAATCTGCAACTCCCTCATCGTGCTCCACTTCGACGACAAAGCTGAAGACG AAGAAGAGGCCTACATCCGCTTCCGCCGCTTCGTCGACAAGGTTCTCCTTTCCCCGCTCGTCCAGCACCACCCGATCGAG ACGCTCTCCATCGTCTCTAACTCTCAGCTCTGCCAATACCGAAGCCGGTTCAACACAGACGAGTGGATCGAAGCTGCAAA ACGACGTGGCGTTAAGAATCTCCAGCTGTCGTCAATACATCTTAACTTGCGCTTGTTGCCCGGTATTTTCACCTCCTTCA AAACCCTCGTGGTTCTGAAGCTGAGTGAGATAATCATTGAATATGGTTCTGTTGGTCCTGTTGATTTTCCCTCACTCACA ACCCTTCATTTGATTAACGTTTTGTTTCGTCAAAGGGATGATGTGATGAAAATTCTTAATGGGTGTCCCATTGTTGAGGA TTTGTATGTTACAGCTCCCTGTTTTGAACTAGGCTACCCTACAGGGTTTAAACCCATGCCCCAGGTTGTGAAAGCACATA TCAACGCTTTTAATGTTCCTTTCAATGCAATTCCTAATGTAGAGTCTCTACACATTGAGGAGATTGAGCGTAGGGACAAA GACAATTATATCAATTCCTACTACAGAGAAATGCCTGTGTTTCGAAACTTAATCAGCCTTGAGCTTACCTTTCCTCGCTT CCGTGGCTGGTTTGATGTAGTGGAAGTGCTTCCTTATTGTCCCAATCTTCAATCTCTTGCCATTGAAAAGGGTAAGTACA GGAGAATTATCGAAGATCAATTGGAACATACCATAGAACCTGTTGTTCCAGAATGTGTTTCATTGCACCTCAAAACATGT TCTGTTAGACACTATCCGGTTAAAAGCATGTATGAAGATTTTGATTTGGCAGCATATATCCTTCAAAATGCGAGGGTTTT ACAAGTGCTGACTATTCACATGGACCCTTATCACTCAACGGAATCTGAGAAGGACCAATTCTTCAATTATTTATCCAGGT GCCCGAGGATCTCTCAAGCATGTAAAATTGAGTGCAACTAG
Protein sequence (LotjaGi1g1v0113900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDRISALPDEIHRYILSFLPTKFAFTTTVISKRWNSICNSLIVLHFDDKAEDEEEAYIRFRRFVDKVLLSPLVQHHPIE TLSIVSNSQLCQYRSRFNTDEWIEAAKRRGVKNLQLSSIHLNLRLLPGIFTSFKTLVVLKLSEIIIEYGSVGPVDFPSLT TLHLINVLFRQRDDVMKILNGCPIVEDLYVTAPCFELGYPTGFKPMPQVVKAHINAFNVPFNAIPNVESLHIEEIERRDK DNYINSYYREMPVFRNLISLELTFPRFRGWFDVVEVLPYCPNLQSLAIEKGKYRRIIEDQLEHTIEPVVPECVSLHLKTC SVRHYPVKSMYEDFDLAAYILQNARVLQVLTIHMDPYHSTESEKDQFFNYLSRCPRISQACKIECN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 43 | 42 | 2.0E-6 | – | |
| ProSiteProfiles | 2 | 50 | 49 | 9.709 | ||
| SUPERFAMILY | 3 | 41 | 39 | 6.02E-10 | ||
| PANTHER | 3 | 378 | 376 | 2.4E-56 | – | |
| PANTHER | 3 | 378 | 376 | 2.4E-56 | – | |
| Pfam | 4 | 42 | 39 | 3.1E-5 | ||
| SMART | 8 | 48 | 41 | 4.2E-4 | ||
| Gene3D | 71 | 383 | 313 | 7.1E-10 | ||
| SUPERFAMILY | 109 | 378 | 270 | 1.14E-9 | – | |
| Pfam | 309 | 352 | 44 | 4.7E-9 | ||
| SMART | 311 | 386 | 76 | 6.3E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0113900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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