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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0114200 |
| Transcript ID | LotjaGi1g1v0114200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT4G10400.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9SV82|FBD40_ARATH FBD-associated F-box protein At4g10400; TrEMBL-Plants: tr|A0A072VLH8|A0A072VLH8_MEDTR F-box/RNI/FBD-like domain protein; Found in the gene: LotjaGi1g1v0114200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:17972274..17974684) extracted from Lotus japonicus Gifu genome v1.2.
CTCTTCTTCATCTATTCTTCTGCTCTCTGTGAGTCCAAATGCCGAAGAAAATGCGAAAGCAAAATCAGCTGAGGAAAACG CCGCCGATGGAAGATCGGATCAGCGCCTTACCGGACGAAATCCTCCGCTATATCCTCTCATTTCTGCCAACCAAATTGGC ATTCACCACCAGTGTCCTCTCCAAGCGGTGGAACCCAATCTGCTACTCGCTCACCACCCTCCATTTCGACGACAAAGCCG AAGAAGATGTAGAGACCTACACCCGCTTCCGCCGCTTCGTCGACAATGTTCTCCTCTCCCCGCGCGTCCAGCACCACCCT ATCGAGACGCTCTCCATCGTGTCTCACTCCGAGCTCTGCCATGACCTAAGCCGCCGGTTCAACATGGATGAGTGGATCGA AGCTGCAAAACGACGTGGCGTCAAGAATTTCCAGCTCTCGAGCTCGACAATACATATTCACTTGCGCTTGTTGCCCAGTA TTTTCAGCTCCTTCAAAACCCTCGTGGTTCTGAAGCTGAGTGGGATAATCATTGAATATGGTACTGTTGGTCCTGTTGAT TTTCCCTCACTCACAACCCTTCATTTGATTGGCGTTTTGTTTTGTCAAAGGGATGGTGTGATGAAAATTCTTAATGGGTG TCCCATTGTTGAGGACTTGTATGTTACAGCTCCGAGTTTTGAACTTGGCTACCCTACAGGGTTTAAACCCATGCCCCAGG TTGTGAAAGCACATATCAACGCTTTTAATGTTCCTTTCAATGCAATTCCTAATGTAGAGTCTCTACACATTGAGGAGGTA TGTAAGAAAATTTGGATCTTTTTGAATTGCAGTTTAAAGTTATGATCAAAATTCTTACTTACTGTTGATAATTGAAGTAC CAGATAAGTGGTAGGATTCCAAAATATTAGAAGTGGAAGGGATGGACTAGTTAAACCGTATGGTTTATTACATTGATGGT GGGTACAAAACTTAGATTCTTAGTTTTTATTTTTCGAATGCCAAATTTATATATATAGATAGAAAGCACCAGTGGTGCTA TAGTCCCACAAAGGGGTAAATACAAACCAAACAGAAAAAAAAAGAAAAGAAAAAGAAACCCAGCACAAAGGGACCAACTA GATAGACACTCTACAGCCCCTGCACTAGAAAACGTACAGCAACCCCAATCTTTCCTATCTTTCCAGACTACCAATTTGAG CCCATCCCCAAGCAAAATTTTGGATTGGTAGACCATATGAGGAACAATTAAATCCTTTTCTTTTACATCTTAACCATTTC CAAGAGCGGAACTTGATTAAGTCCATCACCTTCTCCACACTAATTGATCCATCCTTGAAGATAATAGCATTTCTATGTAG CCAAATTGACCATAACCCAACAGCCCGAACCGTTAGCCAGCTCAGTTCAGCTCCCCTGGACAAACCGTGTCCAAATTGTA GAAGGTGTGCCTCTGATGCCCACACATACATGGTGAGGCACTAATGCCTATTTATAGGCTGGAGTCACCGCCTTGATTAT GGTGGTTTATTGTATGATATAATTGGATCATTCTATAGTTAGAAACATCAAGATATAGTCTTTGTGCTTTCTACAATAGT GTAGATCTTAAAAGATAATTGTAGAAACTTGCATCAATTCTTAACACTTACTTCTTATACTCATACAATAACATTTTGCA GATTGAGCGTAGAGATAAAGACAATTATATCAATTCCTACTACAGACAAATGCCTGTGTTTCGAAACTTAATCAGCATTG AGCTAACCTTTCATCGCTTCCGTGGCTGGTTTGATGTAGTGGAAGTGCTCCCTTATTGTCCCAATCTTCAATCTCTTGCC ATTGAAAAGGTTTCTAGTGGTTAATTTATTTATGGATATATCGTTTTTGTTTGTGCTCTTCTCGGTTTATCTTTTCATAA ATCTTGATTATTATTTGTCTATGTTTAACAGGGTAAGTATAGGACAATTATTGAAGCGAATTTGGAACATACCATAGAAC CTGCTGTTGTTCCAGAATGTGTTTCATTGCACCTTAGAACATGTTCTGTTAGAAACTATCCAGTTAAAAGCATGTATGAA GATTTTGATTTGGCAGCATATATCCTACAAAATGCGAGGGTTTTACAAGTGCTGACTATTCACATTGACCCTCATCACTC AACGAAATCTGAGAAGGACCAACTTTTCAAATATTTATCCAGGTGCCCGAAGATCTCTCAAACATGTGAAATTGAGTGCT ACTAGGTTCTAAATATCTGTTGTTTCCAATAATTTCTTCTACCTATGAATGCAATCCTATTGTTGGATTTGATAGGACAT GGTCTTTTCTCGTTATGAACATAACATGTATTACTTTTTTTCCTATAAACTTGTATTTGGTCAATTATGTGGAATTATAA CCTGATCTTAT
CDS sequence (LotjaGi1g1v0114200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGAAGAAAATGCGAAAGCAAAATCAGCTGAGGAAAACGCCGCCGATGGAAGATCGGATCAGCGCCTTACCGGACGA AATCCTCCGCTATATCCTCTCATTTCTGCCAACCAAATTGGCATTCACCACCAGTGTCCTCTCCAAGCGGTGGAACCCAA TCTGCTACTCGCTCACCACCCTCCATTTCGACGACAAAGCCGAAGAAGATGTAGAGACCTACACCCGCTTCCGCCGCTTC GTCGACAATGTTCTCCTCTCCCCGCGCGTCCAGCACCACCCTATCGAGACGCTCTCCATCGTGTCTCACTCCGAGCTCTG CCATGACCTAAGCCGCCGGTTCAACATGGATGAGTGGATCGAAGCTGCAAAACGACGTGGCGTCAAGAATTTCCAGCTCT CGAGCTCGACAATACATATTCACTTGCGCTTGTTGCCCAGTATTTTCAGCTCCTTCAAAACCCTCGTGGTTCTGAAGCTG AGTGGGATAATCATTGAATATGGTACTGTTGGTCCTGTTGATTTTCCCTCACTCACAACCCTTCATTTGATTGGCGTTTT GTTTTGTCAAAGGGATGGTGTGATGAAAATTCTTAATGGGTGTCCCATTGTTGAGGACTTGTATGTTACAGCTCCGAGTT TTGAACTTGGCTACCCTACAGGGTTTAAACCCATGCCCCAGGTTGTGAAAGCACATATCAACGCTTTTAATGTTCCTTTC AATGCAATTCCTAATGTAGAGTCTCTACACATTGAGGAGATTGAGCGTAGAGATAAAGACAATTATATCAATTCCTACTA CAGACAAATGCCTGTGTTTCGAAACTTAATCAGCATTGAGCTAACCTTTCATCGCTTCCGTGGCTGGTTTGATGTAGTGG AAGTGCTCCCTTATTGTCCCAATCTTCAATCTCTTGCCATTGAAAAGGGTAAGTATAGGACAATTATTGAAGCGAATTTG GAACATACCATAGAACCTGCTGTTGTTCCAGAATGTGTTTCATTGCACCTTAGAACATGTTCTGTTAGAAACTATCCAGT TAAAAGCATGTATGAAGATTTTGATTTGGCAGCATATATCCTACAAAATGCGAGGGTTTTACAAGTGCTGACTATTCACA TTGACCCTCATCACTCAACGAAATCTGAGAAGGACCAACTTTTCAAATATTTATCCAGGTGCCCGAAGATCTCTCAAACA TGTGAAATTGAGTGCTACTAG
Protein sequence (LotjaGi1g1v0114200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPKKMRKQNQLRKTPPMEDRISALPDEILRYILSFLPTKLAFTTSVLSKRWNPICYSLTTLHFDDKAEEDVETYTRFRRF VDNVLLSPRVQHHPIETLSIVSHSELCHDLSRRFNMDEWIEAAKRRGVKNFQLSSSTIHIHLRLLPSIFSSFKTLVVLKL SGIIIEYGTVGPVDFPSLTTLHLIGVLFCQRDGVMKILNGCPIVEDLYVTAPSFELGYPTGFKPMPQVVKAHINAFNVPF NAIPNVESLHIEEIERRDKDNYINSYYRQMPVFRNLISIELTFHRFRGWFDVVEVLPYCPNLQSLAIEKGKYRTIIEANL EHTIEPAVVPECVSLHLRTCSVRNYPVKSMYEDFDLAAYILQNARVLQVLTIHIDPHHSTKSEKDQLFKYLSRCPKISQT CEIECY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 17 | 225 | 209 | 1.3E-20 | ||
| SUPERFAMILY | 18 | 61 | 44 | 1.83E-10 | ||
| ProSiteProfiles | 18 | 66 | 49 | 10.239 | ||
| PANTHER | 19 | 399 | 381 | 7.4E-59 | – | |
| PANTHER | 19 | 399 | 381 | 7.4E-59 | – | |
| Pfam | 20 | 55 | 36 | 3.1E-5 | ||
| SMART | 24 | 65 | 42 | 0.0025 | ||
| SUPERFAMILY | 118 | 309 | 192 | 6.28E-9 | – | |
| Pfam | 327 | 372 | 46 | 3.5E-9 | ||
| SMART | 331 | 406 | 76 | 4.1E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0114200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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