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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0115900 |
| Transcript ID | LotjaGi1g1v0115900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); TAIR: AT1G07090.1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); Swiss-Prot: sp|Q9LMK2|LSH6_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6; TrEMBL-Plants: tr|A0A1J7HPQ7|A0A1J7HPQ7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0115900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:18181145..18183517) extracted from Lotus japonicus Gifu genome v1.2.
GTTGGAGTAAAATAGTGTCTTTCCACTCGCCCCACTAACAAACACCACCACTAGTACTACTCACTCAATTCAACACAACC CTTCTTCACCCTTCAATTCCTTCTTATTCATTCATTCAATTCAATTCATTCATCTAACTCTTTTTACGTCCCATCACCCC AAATCTCTCTCATCAATCTCTTCTTCCCTCTCTAGAAAACTAACCCAAAAACCCTCATCTCTCTCTTTCCCCTTCTCCTT CACAACACAACACAACCTGCTCCAAACACTCATCACTATCTTCCCAAACGCCAATAGAAACAAAAAACCATTTTCTCTAT CTAAGAAAATTGAAGCTGTTCACAGTTGTTGATCATGGAGGCTACATCAGGTGGAGCGTCATCAGAGGCAGCAGCTCCAG CAGTGAGCCATCAAGCTGAACAGTCATCTCCGGCGGCGGCAGCACCTCTGAGCCGTTACGAGTCACAGAAACGGCGAGAC TGGAACACGTTCTTACAGTACCTACGGAACCACAAACCGCCACTAACGCTGGCTTGGTGCAGCGGAGCGAACGTGATCGA GTTCATGAAGTACCTTGACCAATTCGGGAAGACAAAAGTGCACGTGACCGGCTGCCCGTACTTCGGGCACCCGAATCCGC CTTCCCCCTGCACCTGCCCTCTCAAGCAGGCTTGGGGCAGCCTAGACGCCCTTGTCGGGCGCCTCCGGGCTGCCTTTGAG GAAAACGGCGGTCGGCCCGAGTCCAATCCGTTTGGAACCCGGGCTGTCCGGATTTATCTCAGGGAAGTCAGGGAAGGACA AGCCAAAGCTCGTGGTATCCCTTATGAGAAGAAGAAGCGGAAGAGATCCAACGTTGTCACCGCCGCTGCAGTGTCTACAG CGACGGTGAGCGGGAGTGGATCTCCCGCCACAGCTGGTGGCAATGATAATAACAGCAACGCTGCCACACCTAGTGCTGCT ACTGCGGCCACCGTATAGTATAATTTTGATTTTTTTTCTTATTTAATGCTAATATTTATCTATATTTCAAAGGAAATTAA ATGTGATTAAGGTTTATAATTAAGTTACATATTGATGCCTATTTTTCTGAGATTAAGCCTAACCGGTGTATGTAATTGTT TCTAACTAGTGCTTATTTTTTCATGCCCAATATTATGATTCCCTCTTTTTTTTTTTATCATCTATGTTATCTTCTTGATG TGGTATTTCATCACTATTATATGACATGATGAAGTGTGCTTCTCTTTTGTTTTATTTTGGGTTATTTCATTGAAAAAGTT AGATGGACTAGTAGGATGGTTTATTTGTGTAGCTTAACTTAACTTGCAGCAAAGATAGAAGAATCCAAAGCCTTTCATTT TCTGGATAAATTCATTCATTGGTTTAATTTAATTCACTGTTGGACTTTTTAGGGAGAGTGAGCTTCCCTCTTTGATTTTA CATAATTCACTAGGGGTTGCATCATATTCGAATGATGCCATTGAGGAATCTATCAAGCAAGTCGTTAACGTTCATTTGCT TTCATAGTGACATTTCCGATTTTTGTCTTGACCTCCAATCAGTGGTTTCTAGTTAGAAAACAATTTGGTGAAAGTTTGAA AGATGGGAAGAGAGAAAAAGAAAAAATTAGAACAACTAATTTATTATTATCCTTTCATTTTCTTTCTCTGCTGTTTGTCA CCCTGCAAAATAGTGTATTTTATGGAAGTAAATCAAGGAATGGACCCTTCCAATATATTCACAATCATTTTAGTTGGTAG ATAGATATATGAATATAAATTAAATAAATTTTTAGTAAAAATTTCTTGCTAATCCTTGTCATGTTTTGGATTTGCTGCTT GTGAGAAGGCAACAACAAAGAATGAGTCTATGTGGTGCAATCCTACTTTATATGAAGAACTTTACTATCTGCAGAAGCAG AACTATTCATCTGGTCCCCAATTAGGCAATTCTCTTATATGCAAGGCTCAATCTTTCTACAAAAATGATATGCACACGTG CGCTTATCATCCACAGCATTTTTTTTTGTCTGCAATTCTGTTTCAGGTGTTGCATTTGATCTAATCTCAGATTGTGGTGT GAAGTTTTAGGATTTTGGCTATATTTTACTCGGATTGCATGGAGCTACTTTTTTACACAATCACTCAATATGAATTTTTG AATTAAGATTGAAATGTTAATATTTAATGTTGGTAAACAAGATATACATACGTATGTCTCAAATGATAAGAGTTAAACGA CATATAAATTAGGAGGGGAAAGTTCAGGTTCAATCCCTTAAAAGTATAATATTATCTGTCTAATTTTAATCGAACTACCT ACATTTGTGATTGCACTCCATTTAAGGGCAGAAAATCTAATTTCCTTATATTC
CDS sequence (LotjaGi1g1v0115900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGCTACATCAGGTGGAGCGTCATCAGAGGCAGCAGCTCCAGCAGTGAGCCATCAAGCTGAACAGTCATCTCCGGC GGCGGCAGCACCTCTGAGCCGTTACGAGTCACAGAAACGGCGAGACTGGAACACGTTCTTACAGTACCTACGGAACCACA AACCGCCACTAACGCTGGCTTGGTGCAGCGGAGCGAACGTGATCGAGTTCATGAAGTACCTTGACCAATTCGGGAAGACA AAAGTGCACGTGACCGGCTGCCCGTACTTCGGGCACCCGAATCCGCCTTCCCCCTGCACCTGCCCTCTCAAGCAGGCTTG GGGCAGCCTAGACGCCCTTGTCGGGCGCCTCCGGGCTGCCTTTGAGGAAAACGGCGGTCGGCCCGAGTCCAATCCGTTTG GAACCCGGGCTGTCCGGATTTATCTCAGGGAAGTCAGGGAAGGACAAGCCAAAGCTCGTGGTATCCCTTATGAGAAGAAG AAGCGGAAGAGATCCAACGTTGTCACCGCCGCTGCAGTGTCTACAGCGACGGTGAGCGGGAGTGGATCTCCCGCCACAGC TGGTGGCAATGATAATAACAGCAACGCTGCCACACCTAGTGCTGCTACTGCGGCCACCGTATAG
Protein sequence (LotjaGi1g1v0115900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEATSGGASSEAAAPAVSHQAEQSSPAAAAPLSRYESQKRRDWNTFLQYLRNHKPPLTLAWCSGANVIEFMKYLDQFGKT KVHVTGCPYFGHPNPPSPCTCPLKQAWGSLDALVGRLRAAFEENGGRPESNPFGTRAVRIYLREVREGQAKARGIPYEKK KRKRSNVVTAAAVSTATVSGSGSPATAGGNDNNSNAATPSAATAATV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 36 | 36 | - | – | |
| PANTHER | 7 | 202 | 196 | 7.6E-107 | – | |
| PANTHER | 7 | 202 | 196 | 7.6E-107 | ||
| MobiDBLite | 16 | 31 | 16 | - | – | |
| Pfam | 29 | 147 | 119 | 3.4E-63 | ||
| ProSiteProfiles | 34 | 161 | 128 | 78.812 | ||
| MobiDBLite | 174 | 207 | 34 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0115900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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