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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR040222
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We have found 24 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 8.121s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0115900.1
n.a. LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); TAIR: AT1G07090.1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); Swiss-Prot: sp|Q9LMK2|LSH6_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6; TrEMBL-Plants: tr|A0A1J7HPQ7|A0A1J7HPQ7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0115900 LjG1.1_chr1 18181145 18183517 -
2 domain predictions
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LotjaGi1g1v0708100.1
n.a. LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); TAIR: AT1G07090.1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); Swiss-Prot: sp|Q9LMK2|LSH6_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6; TrEMBL-Plants: tr|A0A1J7G842|A0A1J7G842_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0708100 LjG1.1_chr1 127643299 127647081 -
2 domain predictions
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LotjaGi1g1v0708100.2
n.a. LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); TAIR: AT1G07090.1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); Swiss-Prot: sp|Q9LMK2|LSH6_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6; TrEMBL-Plants: tr|A0A1J7G842|A0A1J7G842_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0708100 LjG1.1_chr1 127644530 127646502 -
2 domain predictions
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LotjaGi1g1v0708100.3
n.a. LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); TAIR: AT1G07090.1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); Swiss-Prot: sp|Q9LMK2|LSH6_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6; TrEMBL-Plants: tr|A0A1J7G842|A0A1J7G842_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0708100 LjG1.1_chr1 127644544 127646929 -
2 domain predictions
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LotjaGi1g1v0785000.1
n.a. Light-dependent short hypocotyls protein; TAIR: AT5G28490.1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); Swiss-Prot: sp|Q6NNI3|LSH1_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1; TrEMBL-Plants: tr|F6H618|F6H618_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0785000 LjG1.1_chr1 135753595 135755532 +
2 domain predictions
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LotjaGi1g1v0785000.2
n.a. Light-dependent short hypocotyls protein; TAIR: AT5G28490.1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); Swiss-Prot: sp|Q6NNI3|LSH1_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1; TrEMBL-Plants: tr|F6H618|F6H618_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0785000 LjG1.1_chr1 135753655 135755459 +
2 domain predictions
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LotjaGi3g1v0041900.1
n.a. LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); TAIR: AT1G78815.1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); Swiss-Prot: sp|Q9ZVA0|LSH7_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7; TrEMBL-Plants: tr|I3S377|I3S377_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0041900 LjG1.1_chr3 4493867 4496800 -
2 domain predictions
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LotjaGi3g1v0041900.2
n.a. LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); TAIR: AT1G78815.1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); Swiss-Prot: sp|Q9ZVA0|LSH7_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7; TrEMBL-Plants: tr|I3S377|I3S377_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0041900 LjG1.1_chr3 4495811 4496350 -
2 domain predictions
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LotjaGi3g1v0157400.1
n.a. Light-dependent short hypocotyls protein; TAIR: AT2G42610.1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); Swiss-Prot: sp|Q9S7R3|LSH10_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10; TrEMBL-Plants: tr|I3SLL3|I3SLL3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0157400 LjG1.1_chr3 21497788 21501755 -
2 domain predictions
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LotjaGi3g1v0157400.2
n.a. Light-dependent short hypocotyls protein; TAIR: AT2G42610.1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); Swiss-Prot: sp|Q9S7R3|LSH10_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10; TrEMBL-Plants: tr|I3SLL3|I3SLL3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0157400 LjG1.1_chr3 21500991 21501569 -
2 domain predictions
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LotjaGi3g1v0157400.3
n.a. Light-dependent short hypocotyls protein; TAIR: AT2G42610.1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); Swiss-Prot: sp|Q9S7R3|LSH10_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10; TrEMBL-Plants: tr|I3SLL3|I3SLL3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0157400 LjG1.1_chr3 21500991 21501569 -
2 domain predictions
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LotjaGi3g1v0250800.1
n.a. Light-dependent short hypocotyls protein; TAIR: AT2G42610.1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); Swiss-Prot: sp|Q9S7R3|LSH10_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10; TrEMBL-Plants: tr|I1LUM7|I1LUM7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0250800 LjG1.1_chr3 41930285 41935205 +
2 domain predictions
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LotjaGi4g1v0028500.1
n.a. LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); TAIR: AT1G07090.1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); Swiss-Prot: sp|Q9LMK2|LSH6_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6; TrEMBL-Plants: tr|A0A072UNC2|A0A072UNC2_MEDTR G1-like protein; Found in the gene: LotjaGi4g1v0028500 LjG1.1_chr4 3545377 3546640 -
2 domain predictions
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LotjaGi4g1v0028600.1
n.a. LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); TAIR: AT1G07090.1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); Swiss-Prot: sp|Q9LMK2|LSH6_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6; TrEMBL-Plants: tr|A0A1J7GJY3|A0A1J7GJY3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0028600 LjG1.1_chr4 3560142 3561264 -
2 domain predictions
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LotjaGi4g1v0028700.1
n.a. LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); TAIR: AT1G07090.1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); Swiss-Prot: sp|Q9LMK2|LSH6_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6; TrEMBL-Plants: tr|A0A1J7GJY3|A0A1J7GJY3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0028700 LjG1.1_chr4 3564942 3567381 -
2 domain predictions
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LotjaGi4g1v0378000.1
n.a. Light-dependent short hypocotyls protein; TAIR: AT2G42610.1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); Swiss-Prot: sp|Q9S7R3|LSH10_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10; TrEMBL-Plants: tr|W9SSK6|W9SSK6_9ROSA Uncharacterized protein; Found in the gene: LotjaGi4g1v0378000 LjG1.1_chr4 75693091 75698593 +
2 domain predictions
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LotjaGi5g1v0182100.1
n.a. LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); TAIR: AT2G31160.1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); Swiss-Prot: sp|O82268|LSH3_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3; TrEMBL-Plants: tr|A0A1J7G842|A0A1J7G842_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0182100 LjG1.1_chr5 46396865 46401152 +
2 domain predictions
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LotjaGi5g1v0190500.1
n.a. LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); TAIR: AT1G07090.1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); Swiss-Prot: sp|O82268|LSH3_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3; TrEMBL-Plants: tr|I1LC58|I1LC58_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0190500 LjG1.1_chr5 48314040 48316136 -
2 domain predictions
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LotjaGi5g1v0208500.1
n.a. Light-dependent short hypocotyls protein; TAIR: AT1G07090.1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); Swiss-Prot: sp|Q9LMK2|LSH6_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6; TrEMBL-Plants: tr|F6H618|F6H618_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0208500 LjG1.1_chr5 51015682 51018404 +
2 domain predictions
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LotjaGi6g1v0005000.1
n.a. LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); TAIR: AT1G07090.1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); Swiss-Prot: sp|Q9LMK2|LSH6_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6; TrEMBL-Plants: tr|A0A151T1R8|A0A151T1R8_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0005000 LjG1.1_chr6 981682 985344 -
2 domain predictions
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LotjaGi6g1v0005000.2
n.a. LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); TAIR: AT1G07090.1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); Swiss-Prot: sp|Q9LMK2|LSH6_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6; TrEMBL-Plants: tr|A0A151T1R8|A0A151T1R8_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0005000 LjG1.1_chr6 984077 984670 -
2 domain predictions
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LotjaGi6g1v0116900.1
n.a. LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); TAIR: AT1G07090.1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); Swiss-Prot: sp|Q9LMK2|LSH6_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6; TrEMBL-Plants: tr|B9HNA6|B9HNA6_POPTR Uncharacterized protein; Found in the gene: LotjaGi6g1v0116900 LjG1.1_chr6 29640996 29642580 +
2 domain predictions
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LotjaGi6g1v0322900.1
n.a. Light-dependent short hypocotyls protein; TAIR: AT2G42610.1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); Swiss-Prot: sp|Q9S7R3|LSH10_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10; TrEMBL-Plants: tr|I3T9J9|I3T9J9_MEDTR DUF640 family protein; Found in the gene: LotjaGi6g1v0322900 LjG1.1_chr6 63868448 63878806 -
2 domain predictions
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LotjaGi6g1v0322900.2
n.a. Light-dependent short hypocotyls protein; TAIR: AT2G42610.1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); Swiss-Prot: sp|Q9S7R3|LSH10_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10; TrEMBL-Plants: tr|I3T9J9|I3T9J9_MEDTR DUF640 family protein; Found in the gene: LotjaGi6g1v0322900 LjG1.1_chr6 63878098 63878655 -
2 domain predictions
 –