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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0117100 |
| Transcript ID | LotjaGi1g1v0117100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NBS-LRR type disease resistance protein; TAIR: AT3G14470.1 NB-ARC domain-containing disease resistance protein; Swiss-Prot: sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1; TrEMBL-Plants: tr|G7JM50|G7JM50_MEDTR LRR and NB-ARC domain disease resistance protein; Found in the gene: LotjaGi1g1v0117100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:18429122..18431581) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAATATGCTTGCCTCCCAACACACCGCACTCTTCGGGTATTACAAACAAGTTCTTCCAATTTATCATCACTCGGGAG TTTAATTCATTTGAGGTATTTGGAGATTTATGATGTTGAGATAAAAACCCTGCCCGACTCAATTTATAGCTTGAGGAAAT TGGAAATCTTGAAATTGAAATCTTTGAGGAAACTTACTTGTCTACCAAAACACCTTAGTCGGTTACAGAATCTAAGACAT CTTGTCATTGAAAGTTGTAGTTCATTGTCATGTATGTTCCCTAATATTGGAAAATTATCCGGTCTGAGAACATTAAGTGT TTACATTGTCAGTTCAAAGACAGGGCATAGCTTGGCAGAATTACATGACTTAAAACTCGGAGGAGATCTGCACATCAAAG GCCTCGAACACGTATGCAGTTTATCTGAAGCCCAAGAGGGCAATTTGAAGGGTAAAAGCGGTCTTCACAAATTATTCTTG TCATGGGGTAGTAGCAAGGAGACCAGGTCTCATGCTACTAACACGGATGGAGTACTTGAAGGGCTTCAACCTCAGTCAAA TCTCAAGGAGTTGAGAATAGATCACTATGCAGGATTAAAATCCCCAAGCTGGATTGGATTGCTCAGCAATTTAGTTGAGC TTGAACTTTCTGATTGCCAGAATATGATGCAACTCTCATCGATCAGTAAACTGCCATCTTTAAGAAGACTTGTGCTTGAG GGAATGGAAAATATGAAGTACATAGATGATGATGAATCTTACGATGGTGTGGAAGTGAGAGCTTTCCCTTGTTTAGAAGA TCTCAGATTAGATGACTTACCAAAGTTGGAGCGGTTGTTAAAAGTGGGAAAAGGGGAGATGTCTGCCGCCTATCTAAGTT GGGGATTGACAGCTGTCCTAAACTTGAGTTGCCATCATGCATTCCATCACTTACAAGCCTTACTTTATCTGATTGTACAA ATGAGCAACTGAGGTCGGTCTCCCATTTCACTGGTCTTACTTCCCTCTTTCTTCGTTATGGCCTCCTGACATCCTTCCCA GTAGAACTCTTCAACAACCTCAATGCTTTGGAGGAGCTGGAGATCGATGGGTTCAATGAGCTGGAGTGTTTACCAGAGCA AGGTTGGGAAGGTCTTCACTCCCTTCGCTGCCGGATGGTTTTCGACACCTCTCTGCACTTGAGAGACTGATCATTACGGG TTTCCCAGAATTAAAGGAGCGGTGTAAAGAGGGAACAGGGGAGGACTGGGACAAGATAGCGCATGTTCCAGACCTGAGAA TTGAATGATGAAGAAGAAGACATGAATTGAATTTCTGATTTGCTCCTCTCAGTCCAATTCGGTAGGATCTCTCGTACCCC TTCCGCGTTTTTTCTATTAATTGCGTTTCTTGTTGATATTCAATGGGATGTTCTCCAATTTCCATAGTTTTAATCATTTG AATGACATATCAAACTTTTACGCTGTGTGTAGTGTATATTATTCAAAACATTCATCAATTAAATGGTGTTTCTTGTTTGG AAAAAAATTGTTGCTCTCTGCTCAATTGACTTCTCTCGGCTCTTCTTTATCTGGATACTGATTTTTTGGTTTACCATGGA GTTGGTACGATACATAACTTTCTGATCAAAATAACAAATTGGGCATGATATGAGCCTTCTTTTACATGAGTTATTATTGG CAAATGTGTGCTTCCAGTAGTGCTTTTTAATTATGTTGTTTTTTGCTTGACTATGTGATCTGAATGAAACAGTTAAACAT TTTAGCACAATCAAAAACATAATTTCCATAAACTGGAGCTGGTTGAATGTTGATGTATCCAAGCTAGAAATGTCATTAAT TGTTGGGAAAAACACAATAAATTTTGAAGTTGGGAATGGTATCATTGTTTAGAAAACATGATATATGAAATGGAATGATT TAGACCTGAAATTGGCACTTTTTCCCGTTTTCTTTAACCCTATGTGCAGTTTTTGTTCTTAAATTCTCACATTTCAGAGT GACATTGATTACAAATTAGATAACACTTTGAGACCATTTTTACTGATAAATATTTACAATTTGCAGGAAGATATATGGAG TAAAGTAAATCATTCCTGGTTGAAATCTGAGGTTTGTTAATTTCAAACATTTTTTCCCTTATAACTTGATGATTGTGCCA TATTTTTTCCAACAGCTTCATATTTTTCTTAATGCCAGTGTACCAAATGGATTCTGTCTATCAATTGAAATGCAATCTCT GGAGCCTGAAAATAAGCACCAGGGACCATGCCAAGCTCAGAGCATTAGAAGTTAGTTATAGTTACTTTTGACAAAATACT TGAGTTGTTTCTTCATTTGGGAAATTTTTATTTTTTCAAGGTAATCGTGAAAAACATCTATCAGATTTTGCATTTTTTAA AATGACTTGGACCTTGATTATTCTACTTGTTTAACATTAGAATAGGAGGTGAGATTTGAA
CDS sequence (LotjaGi1g1v0117100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCCCTAATATTGGAAAATTATCCGGTCTGAGAACATTAAGTGTTTACATTGTCAGTTCAAAGACAGGGCATAGCTT GGCAGAATTACATGACTTAAAACTCGGAGGAGATCTGCACATCAAAGGCCTCGAACACGTATGCAGTTTATCTGAAGCCC AAGAGGGCAATTTGAAGGGTAAAAGCGGTCTTCACAAATTATTCTTGTCATGGGGTAGTAGCAAGGAGACCAGGTCTCAT GCTACTAACACGGATGGAGTACTTGAAGGGCTTCAACCTCAGTCAAATCTCAAGGAGTTGAGAATAGATCACTATGCAGG ATTAAAATCCCCAAGCTGGATTGGATTGCTCAGCAATTTAGTTGAGCTTGAACTTTCTGATTGCCAGAATATGATGCAAC TCTCATCGATCAGTAAACTGCCATCTTTAAGAAGACTTGTGCTTGAGGGAATGGAAAATATGAAGTACATAGATGATGAT GAATCTTACGATGGTGTGGAAGTGAGAGCTTTCCCTTGTTTAGAAGATCTCAGATTAGATGACTTACCAAAGTTGGAGCG GTTGTTAAAAGTGGGAAAAGGGGAGATGTCTGCCGCCTATCTAAGTTGGGGATTGACAGCTGTCCTAAACTTGAGTTGCC ATCATGCATTCCATCACTTACAAGCCTTACTTTATCTGATTGTACAAATGAGCAACTGA
Protein sequence (LotjaGi1g1v0117100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFPNIGKLSGLRTLSVYIVSSKTGHSLAELHDLKLGGDLHIKGLEHVCSLSEAQEGNLKGKSGLHKLFLSWGSSKETRSH ATNTDGVLEGLQPQSNLKELRIDHYAGLKSPSWIGLLSNLVELELSDCQNMMQLSSISKLPSLRRLVLEGMENMKYIDDD ESYDGVEVRAFPCLEDLRLDDLPKLERLLKVGKGEMSAAYLSWGLTAVLNLSCHHAFHHLQALLYLIVQMSN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 172 | 172 | 1.0E-23 | – | |
| PANTHER | 1 | 172 | 172 | 1.0E-23 | – | |
| SUPERFAMILY | 4 | 185 | 182 | 5.95E-11 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0117100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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