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LotjaGi1g1v0121200.2

Overview

Field Value
Gene ID LotjaGi1g1v0121200
Transcript ID LotjaGi1g1v0121200.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Alkyl transferase; TAIR: AT5G58770.1 Undecaprenyl pyrophosphate synthetase family protein; Swiss-Prot: sp|Q56Y11|DDPS2_ARATH Dehydrodolichyl diphosphate synthase 2; TrEMBL-Plants: tr|I1MBA3|I1MBA3_SOYBN Alkyl transferase; Found in the gene: LotjaGi1g1v0121200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:19101368..19105757) extracted from Lotus japonicus Gifu genome v1.2.

AAGAGCTAAACCATTCATTTTTGCATTTTGCCAAACAGATAAAATCGTTATCCCAGTTCAGGAATAAGATGCAATCATTA AGGCTTCATTTTCCCGCTCCCAAACAGACAAAATCACTATCCCAGTTCAGGATTAAGACGCTATCATTGGTGCTTCCACA CACTAACTATTCTCATTATAATCCTTATCCCCGTTCCCAAACACACTTATTGCCTTCTTATCCAGTAACCGTTACTAAAC GCAGCAGCACCATGACTGTTATAGCAAACATGGCGGTTCAAGGTGACGCGGACGGCGGGACCTCCGTCGCCGAGGAGGAG CCGATGCCGCCGGAGCTGCGGTTGGAGCTGATGCCGAAGCATGTGGCGGTGATAATGGACGGGAACGGGAGGTGGGCGAA GATGAGGGGGCTGCCACCGTGGGAGGGACACGAAGCCGGCGTGCGGTCGCTGAAGAGGCTGGTGAGGCTGTGCCGGAGCT GGGGGGTGAAGGTTCTGACGGTGTTCGCTTTCTCAACTGATAATTGGGTTCGCCCCAAGGTCATTATTGTTGTCCATTTT CTTTTGGTTTTGGCGTCGTCGTTGTTAATTTTGTGGTGGTGGTTGCTTTGCTGCAGGTGGAGGTTGATTTCTTGATGAGG CTGTTTGAGAGAACTATAAATTCTGAAGTTGAAGCATTTATGAGGTAACACTAAACTCCCTTACTGCTCTACTTTTTTAA TCAAGCATGTTTAGTTTAGTTACTTCATTTAAACAAGTCATTAGATACTCTTAAACACAGAGACTTCTTTTAATTTATGG GTCATGACTTATGATGCTAGTACCCACTAACACTACTACATCTTTCAAATAACTTATTTTGGTAAACTAGGAGAAATGAA GGGGTTTGCGAGGTGAATGGTTAAAGTTCAAATTTTGGCGAAAAATTAATTTACTAACAATTACTAACAACTAACATCTG TCTACAAAAAAACCTAGAGTGGATAATGACCATTTATATTTTGGTTCACCGGTGAATCACTAGTTAAAAACAGTTAAATT TAAGATTCTAGAAATATTCTTTATATCAATGGATAAGATTGAAAGAGTGATAAAATGGTACAAAGGTAAATAAACTTAAT TTGCACCCGGAGCTTATCTCTCAATTTTTTATGTAGATCTAGTCAAATTGGAGAAGGAGGAAAGGAGACAGGATGGCCGC GGCGGTGGTGGACCGCTAGTTGGTTGGAATGGGTGGGAAGGAGGGATAGGGGATGCGAGAATACATTGACTTAAATTGTA AAAAATATCTGAAATTCTGGTTCACGTACATGACAGATGTTGAACCAAATGTCTGAGACATCTGGCACAACGTACAGCAG AAGTGCAACACAATATTAAATCAACAAAAATAATAAAGAACACAGAGAATTGTTAACCCAGTTCGGTACAACATCACCTA CATCTGGAGAGCTTCAGCCCGAGAAAGATAATCCAGTATTATAGAGAATCAAGTACTTAATTGAACAGCCCCTGTTCACA GCCTTTCCTACTTATTACTACCAGTGGTTTATTACTTAGGTCTCCCCCAGTATGAGAACCCCCTCTCACTTTCTCACACA ATCACTGCCACAGTGATTGAAACAATAAACAACAAAATGAAGAGATTATAACTCAACTAAACAAACCAACTCTATGCCAT ATGATTATCAATGGAGACAGTAGAGTGGTGTACAAATAATACAATAAGGACTCACAACCACAAACCCTAAAAACACCCCC AAACGGTGCCAAACGCACACTTAGCAACTAGGGTATAAATAGTTGTTCTTTAGGTCTTGATCTTCAATGGGCTTGCACGA AAATAGAGTCCACAAACAGATTTGGAACAAATCTTTTTAAACCAGTAACAAATCTTATCAAATAAGATTTGAACAAAAGA TAACAACTTTCACAATTTAAATCAAATCAAATCCTCTTCAGCAGATTTGATTCCACTATAATATATTCCAGATAGCACAC AGAAGCTTCTAAAACAACCCTAACTTGAATACCACGTAATCAAAACACAGCTTCACAGATAACTTAGTCAACTCATATCA GATCCGCAGGGACACATGTCATAGTCAAGATGTTACAACATCGTGTTCGACATGTTGGCAAAAACACACTTAGCTGAAAT TCAGACAATCATGAACAAATGAACAACAATATCTTTGGTGCAGTGATGAATCAAAATATAAATGGTCCACCCTAGTGTGT ACCTTTTATTTTTTCCTTTATCTCTTACTTATTATCACATCACATCATATATCATATCAATAAATTATTTCTCTTCTCAT ATTTTCTCTCTTGTCTACACAACATTTTAATTAATTTAGTTACAATTTATAATATGTCACTTGTTTTTTTACATTTAACA TATATATAAGGGTTTTCTTTAAAGAGTAATATAGTATGGACTCTGATAGATAGAAAGAAAAAAAAAAGTAACATGATATG TGATTGATAGAAAAAGAAAGTGAAAAATGAGATGCAACAGAAAGTTAAGTATAAATGAGATTTAAAATACAAAAATTTGT AGTATTAATATAGATTTAAAATAAAAGTAAGGTAAGCCCCCAAACCGAAAATATCGGGAGATTGTTCTAACTAGGGATGA TAATGTTACCCAAACTCGTGGGTACCCGTCCGAACCCGACCCGAATTTACGGGTAAAACTCGATATAATTGGGTTTGAGT TTGGTATTGGTGATACCCGCACCCGAACAAATCAGTGTTGTTAAGATCTCGATATGGATCCCAAGATCTTACGATTTTAG GATCCGAGAAAGCCTCAACGATCTAGATCTATTACAAGATCGGAGAATGGATTGGATCTCACCGGGATCCCGATCCGCGA AGCCAGGATCCCTCGTATTCCGATCTTGCAGAGTGGGAGTTTCACACTTGGTCTTTTCTATTTTTGGCCCATTTCAACGT CCAATTTCAGAATTTAAAAATAAAAGTCCAATTTCAGCCAAAACTCATAAAGAGATAAATGTTTCTTAATGAATATAAAA AAGTAATAATCCCTAAACCCCTAAACGACAATTCCTAACTTTCTCCAAGTCTCAAACCATTGAGCCAAAGCCAATACAAT GAACAAACACCTTGGATTATGATTCTTATGCTATGAATTTATTATGTCATTGTGTGTGAATTATGAGTAATTTTTCATAT GTATGTGAAATTTTATGTATATATAACTTATGAAGTATATATTTGCATACTTATTAGGATCTTATTAATATCTACGATCC GATCCCAGTCCTAGGATTTACGATCTTTTACCCCCTAACTGATCCTAAGAAGATCCCGATCTTGACAACATTGCAGACAA TATATATATATGAAATCGCAAAACTACTCTTATATATACCATGCTAACAACTTGATTTGCTAAGAATTTGGTTATATTTA AACAACAAGATACCATATTTTCTGACAAAAAGATATAAAACGGTTTTTTCACAACAAAGTAATATAAGTTATGTTTTTTT TTGCAAAATAAAGTCTATGCATCAAGTTAGGTTAGGACATGAGTTTGAGACTACTATGGGTTTGAGTATGAGAGTTCAGG TTTGAGTTTGGGAAAAATAATAAAAAATATAATGTGTATAAAAATTAGTAAACTCATTTTTGAATGGCTTATGGTGATTG GCCCAATACTAACTATTTTGGGGTCACTTTGTAATATTCCCTTTATTACAGGGCAGGAATTCGAATATCTGTAATTGGAG ATTCATCAAAGCTCCCCAAGTCCCTGAAGAGAATGATAACTAGTGCAGAGGAAAGCACCAAGGACAATTCCGAACTCCAA CTTATTGTGGCGGTTAGCTACAGTGGCAAATATGATGTTGTCCAAGCATGTAGAAGTGTGGCCAAAAGAGTCAAAGATGG CCATGTTGATTTGGAAGACATAGATGAAAACATGATTGAACAGGAACTGGAAACAAATTGCACTGAGTTTCCTAATCCTG ATCTACTAATAAGGACTAGTGGGGAACTTAGAGTTAGCAACTTCTTGTTGTGGCAATTAGCATACACAGAACTATTCTTT AATCGAGAACTTTGGCCTGATTTTGGGAAAGAGGAGTTTGTAGAGGCCTTAAATTCATTTCAGCAGAGACAAAGACGCTA TGGTGGACGCCATTCATAAACTATTTGTCTGCAATATGGTACCTTATAGGTTGGACTTATAATAAGCTACATAAGTAAAG TAATTATTGTCTGCCATATGGCATATGTTATAGCTAGGCGCCTAAGAAAAATTAGTGTTTTTTACCCGTTCGTTGCACGG TGAATTTGTCTATTATAATTATATATACATTTTGAGATAAACTTCACTCTATGAGCAATGAAGTTTCTTT 

CDS sequence (LotjaGi1g1v0121200.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGGCTGTTTGAGAGAACTATAAATTCTGAAGTTGAAGCATTTATGAGGGCAGGAATTCGAATATCTGTAATTGGAGA TTCATCAAAGCTCCCCAAGTCCCTGAAGAGAATGATAACTAGTGCAGAGGAAAGCACCAAGGACAATTCCGAACTCCAAC TTATTGTGGCGGTTAGCTACAGTGGCAAATATGATGTTGTCCAAGCATGTAGAAGTGTGGCCAAAAGAGTCAAAGATGGC CATGTTGATTTGGAAGACATAGATGAAAACATGATTGAACAGGAACTGGAAACAAATTGCACTGAGTTTCCTAATCCTGA TCTACTAATAAGGACTAGTGGGGAACTTAGAGTTAGCAACTTCTTGTTGTGGCAATTAGCATACACAGAACTATTCTTTA ATCGAGAACTTTGGCCTGATTTTGGGAAAGAGGAGTTTGTAGAGGCCTTAAATTCATTTCAGCAGAGACAAAGACGCTAT GGTGGACGCCATTCATAA 

Protein sequence (LotjaGi1g1v0121200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRLFERTINSEVEAFMRAGIRISVIGDSSKLPKSLKRMITSAEESTKDNSELQLIVAVSYSGKYDVVQACRSVAKRVKDG HVDLEDIDENMIEQELETNCTEFPNPDLLIRTSGELRVSNFLLWQLAYTELFFNRELWPDFGKEEFVEALNSFQQRQRRY GGRHS 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 162 162 2.5E-75
PANTHER 1 162 162 2.5E-75
Pfam 1 161 161 3.7E-48
TIGRFAM 1 161 161 1.3E-50
CDD 1 155 155 2.37791E-75
Gene3D 1 165 165 2.5E-56
SUPERFAMILY 1 156 156 6.28E-49
ProSitePatterns 107 124 18 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Transferase activity, transferring alkyl or aryl (other than methyl) groups Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor).

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0121200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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