Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0121400 |
| Transcript ID | LotjaGi1g1v0121400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA binding protein; TAIR: AT3G47120.2 RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q9SD61|C3H42_ARATH Zinc finger CCCH domain-containing protein 42; TrEMBL-Plants: tr|I1JHC2|I1JHC2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0121400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:19137139..19144721) extracted from Lotus japonicus Gifu genome v1.2.
GTGATATGTTGATTTAGAAAGAGACTTAAAAAGAGGATGAAGTAGGGATGAGGAAGGTGAGAGTGGAAGAGGAAGAAGGG ATGGAGTTGGGAGAGTACTTTTTTATTTATTTTTATTTTTATGTCTTTTATGTTAGGGCTATTTTTGGAATTAAAAAAAT AAGGGGATGGTCCAAATAGTTATGGCCAAATAAACTTACTACTAAAAAATCACAAGAGTCCGTTTATTTCACAATTTCGC TGCTACCTCTCCACCACTTCTCTTCCCTGCGCCTCCCCCCTTCGCTCGTCCATCCGCCGTGGCGGTTGCTATCTCGGAGG CCGTCCGCGTCGTCACCACCCCCTCCGCTCCTATCTCCGTCACCGGCACCCTCTCCGAGGCCAGTTTCCAAGCACACCTT CATCTCCACAGTCTCCTCCAAGCTCCGACACCGAATTGAATTTTTAGGGTTTGTCAATCCCCTCCTCATCCCAATTCAAT TTCTCAGTTACAGTACCTTTCACCCTAACAATTTCCCTTTTTCCTCTTCCACTTGCATCAGTGTCTGTGAATTTGCGAGT GTTGAGTAGCAGAGAGAGATGAACCCATTAACCCTAGTGAAGCGAATCCAGAACATCAATTCAAAGGAAGCAGCACTTGG CATCGGTGAAGAAGCTTCATGGCACGCCAAGTACAAAGATTCAGCTTATGTGTTCATTGGTGGCATTCCCTTTGATCTCA CTGAGGGTGATCTCCTCGCTGTTTTTGCTCAGTATGTTTGTTTCTTCTCTTTTCTCTTCGATTTAGCCCTTGTTTGGAAG AGCTTATTTGAGCTTATCGGATAACATAAGCGCTTATGCCAGTGTTTTGGGAGAGCTTAATGCAAACAGCTTATGACCTG TTTTGAGATTAATAAGCGCGCTTATGTAATCAAGCTGTTTTTCCAAATGGGGCTTTAATGCAAATTTTTAATCAATTTCT GTGTCAAAGATTGAAAATTTTGATGAATTTTGTAATACCCAGATATGGAGAGGTTGTTGATGTTAATCTTGTGAGGGACA AAGGTACTGGCAAATCATTGGGTTATGCTTTCCTTGCATATGAAGATCAAAGAAGCACAAATCTTGCTGTGGGTTAGTCT CTTTTCTCTGATCCTAATTTTGTTTTCCTTTTCATTATAATTTAAGCTGCATTGCTTTACAATTATTATTAATTTTTGAT AGGCAAATGTTAGTTGTTAGTAATGTTAGTATCCCTCCTCAGGGTTCGAACCCTGGACCCTTCACCCTTCATCCCACCCA ACCCTTATGTCCCCTAGGCCCTAACTCTTACCACTTTCTAATTATTGTGTTTAATTTTTGTTTTGTCTCAGATAATCTAA ATGGAGCACAGATTTTAGGTAGAATTATTAGGGTGGATCATCGTGATAAGTATACGAAGAAGGAAGAGGAAGATGAAGAG ACAGAGAAGCAGAATCGGGAGGCACGCGGTGTTTGCCGACAATTCCAAAGAGGTGAATGTACTCGTGGTGCTAGCTGCAA ATTTTCTCACGATGAGCAAGTAAGATAAGCATTCTACAATCACATTAGCATGCCACAAATTAAACCTTGACTTTATCTGG AAAACTTTAACATTAGTATTTGATTTTTCTTCCTAAAATGCTTTTTGGCTTATTTGAATATGATGTTGCTCTATGATAAG TCAATATTTTGGGAATGAAACTTTTGTCATGGTGTTATTCTTGTAGAAGATAATTACACCCAGAGCTGAATTTGATTTTT TTATTTCAGTTGTTGATCTGCCTTTGCTACCATAAAAGTTCAGTATTTCAGCTAATAAACAGATTATTTCTAGTTACTTG CTACAAGCCTACAACCTTAACAACAGGCTTGTCTTAGTTTTGTTGAAGTTCATGTATATTCTCTATCAAGCCTTTGCGAC TATAAAAGTTCAATATTTCAGCTAAAAACAGATTATTTCTAGTTACTTGCCACAAGCCTACAACCTTAACAACATGCTTG TCTTAGTTTTGTTGAAGTTCATGGATTTTAAAGGGTGTCTGGTCAGACTTGTGAAGGGACTGTATATTCTCTATGAGTTG ATGCATATTCTTTTTTCTACATTTTCCCTGTGTTTTTTCATAGCCTATTGAGGACTGACGATCCTCTTATTTTGCACTCC TGACAGTAGTCTCTCATTTTTCGATGAAATTTTCTTTTATCTAGAGGAACTTTTATTTCTGGAGAAACTCATCTTGGTTG CTCAATCAAGTCTTTGCCTTCTCTCTCGGCTTTGCCACTCTGTGAGTGATTGAATCTCCCAACCCCTCCAGTCACTGAAC GCTGCAGCTCTGGCCACCAATTAGAAAACAGTTCTTCTGCTCTAGTCAACCACTAACTTCCGCAAGCCACGATCTTTAAT TTCTTTTTACCTTTCTTTCTTGTTGCTTGTACTTGGTCTCCCTACTCAATATTTCATACGTTTATGATTATGTTTATTCT CTTTCAGTGCTATTATAGAAAACCAAATATTTCTTTCTGCATGCTGCTTGCTGGGCTTGCTGTCTGGTTTAATTTTTCCT GCCATCTCTGTTGCTGACGGAGCGGTTTTCTTAGATAGAAAAAGTGATGCATCAATTTCCTCCTCCTAGGTTTATGGATT TGGAAACTCTGTTGATGTTTCATTGTTCTTTATAGTTTCCTTTTAAATCATAGAGGATCCCTTATCTTTCCAATTCATTG TATTTACCTTCTCATGCTCTTAATGAATTTGTTCATATATATATTATGATTGAATTATTGAAATCCACAAACCAGAATTG AAAGAATAAATGGAAAATAGAATGAACAAGAAAGAATATATTATTACTGAATGAAAAATGTAGAATCGGAGTTTCACCTT CAGAAAGGATTTCTCCCTTCTCACGCATGTCAGAATCAGAATAAATCCTCTCTACCATCTTTCCCTGTTAATCTAATCGA ATCTCCTCTAAGCTAACTAACTTATCTAATCCTAATTGCTTTGACTACCCTGTTATCCTAACATATTATGTAATTCATCA AGAATGAAAGAAAACTAAACAGAAGGAGGATCACAAATCCTCCTAAGTTGCAAATAAACTTCAGTGGTAAGAAAAAGAAG AGAAAAACATCAACTCAATAAAGTACACTAGACCCTTGGCATGTCTTTACTTGATAAAACCTCTAAAATCACTTGTGCTG GAGCCTATGATGCAATAAGAAAACAAGTCTGTCTCATTAAAGCTTTGGAAATGATAGAAATTCTGGAATCACACTCTAGC AAAGAGCAAAATACCAGAGAAACTGATTTTCCTTTCTACTCGTGAAACCATATAACGAGTGGAAACAAGAACATTGATGG TCATATTTAAAAAAGTCTTCTGAGTAGAATGGAGCAGAATGGTTGGTTAAGAAATTCAACATCGAGTTTAATAACCAACT GTGAAGCTTGTTGAATAAAAATTAGCTATTGCAAATTTTTTTATGATTGGTATATACCTTTACTGATTACTGATAACTTC ACTGAATAAAAATTAGCTATTGTAATTTTTTTATGATTGTTACATACCTTTAATGATTACTGATAACTTCACTATTATTG TATGGTGGCCTTATTCTATGATGTTCATTAATGAAATAAAAAAGCATTACAAGTTATGTGTGGTGGGGTTGAAATCATTT CTTGAAGAATGATTTAAATTTGAATCTTTGTTCCAGGCTACAAACTCTGCATTTTAGGAGTTGAAATATGAATATGAATT TTAATTCTCTATCCCAAACATTGTGCATGTCTAAATATAACAGATTAACAGTAAAACTAATTTCGACCTTCGTAGAATTG AATTTGAATTGTATCCACATTTTGATTATACACCAAGACCTCTAATTTCTATAACAGTGTCTGGCACAATAAAAGCATAT AATTTACACATTCCTGAATATGTTCTTATAGATTGAAGCTGTATTGTTTGACTACTGTTTCTAAAAAATTGCTGATTTTG ATCTGGAAGCTCATTGCTGGGAGTAGGACCGATTTTCATTGATGAGTTTTAGTATCTCCTGCCTCACGTAGTGATGAGGA AATCAATGTCATGATTAAGCTTGTGTCCTTGCTGATTGTAATGTATAACTATGGACATGTCTTCAAAGTTCTTACTAATC TGCATTTTTTTCATGACCCTGTTTAATTCTTTGTTGCTTTTGTCCTCTGCTCTGTATAGTTTTATCACTTTAGCTTTATA TTTAGATTTAGTTCAACTTTGGGTTTTTCATGGTATAATTTGTGCTGATATTCAGGATAAAACCTTGGCTTAAGATGCAA TGATTTATCCAGCTACTTACTGTGTTGTATGCTTTCAGTTCCTGACTATCTTTCTTGTCTTTTTCTAGAGAGCTGCAAAC ACTGGTTGGGGTCGTGAAGAGGACAATCCAAAATGGGGTCATGACAAATTTGAGGGTCCTAAAAAAGAAAGAAGACCTGG CAACAACCAATCAAATCGTATTGGAGAAACTATAGACAGAGATTCACGCTCCAGAGCACAGAGTGAGATGGGATTAGACT ACCAACCCAAGAAAAGTGATAGAAGAGATGAGAAAGTGTCGCAGAGGCATGATGGTGATGATAAATTTGAGGGAAGAGAA AATAACAGTAGAAGAGAAGAAAAGAGATCAAGAAGGCATGGAGATGATGAATTTGAACACATACCAAGAGAAGATCGATA TAGGAGAGATGACAAAAGAGCAAAAAGGAATGGTTATGATGGTATGGAACCTGAGCCAAGAGATCATCATAGAAGGGAAG CCAAGAGGTCAACAAATCCAGATGATGCTGAGTTTGAGCCCCAGTCTAGAGATTCTGATATAAGGGAAGAGAAAAGATCC AGGAGGCATGATGATGATGATTTTGGAAGTAAGTCACGACAAACTCATAGTAACAGGGAAGATAGGAGACCGAGAAAGCA CACTGAAGATGAATCTGCAGCAAGGTCAAGAGGAGATTATGATAGGAAGCAAGATAACAGATCATATAGAGATGATACTG ATCGATCAGAACCAAAAGCAAGATACGGTTATGACAGGAGAGAAGAGAAGAGGTCGAGTAGGTGAGGTCTGGGGTTTTTT TTTTGGTTAAGCCAAATATATATTAATATATTTGGTCTGGGTCTGGGTATGTGCCTCTCATTCCTCCTCTGTTGTGGAGA GAAATGAGTATTGGAGTAAGTTGAATATTTTTTTATAACCTGTAATGTGACTCTTTGCTTGTAATACTTACATTTCTCTG TGAAAACAGGAACAATTTTCCTTTTGGAATGGTGAGTTTGATACATATTTTGTTTGGCTTCATGGTCTCCAGACTCCAGT TACCAATGCTAATGCTATTGCTAGAGAACCATGCATTCAATATATTTTCTCTATATGATCTTTCAATTTTTCTACAAGCT AACAAGGAGCAAAATCTCTTGCATGTCGGCTGCGAATGTTTATGGTGATAGTCTACAAGATCCAAAACATTACGCATGAT TATGGATAGTTTGTTTCTTTTGATTTCTTCGTCATTTAATTTATAATTGTAGAGTTGGACCCTGAGTTTACATACGAAAA AGTGTAGACAACATAAATCAATACCTTTGGAAACGTTTTGGGGAACTTAAATTAAGGTGTGATATTGAGTTCATTGACAT TCTTTTTTTTACTTGAGTTTGGTTGGGAGATTGCTTTGGAGCAAAAATAAACAAGGTTTGCAAAAATACTTACATAATTA ACTTTAAGCACATCAAAGAGGCTCAGTAATAGCTAGAAAGGGAAACACATGCATGTATGCAATGTAGGGTTTTACTTTGG AACCTTTATTATAAAAAGCAAGACCTTTAACATTTTAACAGGTTCGTGAGGCTCAGTGCCATTAAAACCAAAACAGAAAG AAAGCAATTTTTTTCATACATAGACTGCAACTAGTTTCAATTTTCAGTTTAGATTCAGTCAACATTTTCCACTAGAATGA TAGCCTGTTTCAGGAGATAGTTGTTTACATATGCTATGACATCTTTATGCATTTATTCTAAGATGTAGCTACTGCATCTA TGAAAAAGCATCAGTTTCTGTTCATCATATTATCAATGAGTTTCCTAACAGAAGTAAAAGAAGATCCACCGCTAAGGACA GCTTTCCTGGCCATCTTGTTCATCTCTTGCACCTTCTTGTGCACCATGTTATCTTTATCCATCAAGTTTTTCAGCCCTTT CTCTATCTCCTCTGCCATTACAAGAGCACTACCCCATCTATAGTTCAATCTCAGCTCCACAGCCAATCCCCATTCCCTCA CCATCCTGAAAGCATTCAGCTGTTGTTCTGCATAGATAGGCCATGTCAATGTTGGTACCCCAAACCACAAGCTTTCCAAG ATGGAATTCCAACCACAATGAGACACAAACCCACCAATGGCTTTGTGAGCCAGAACCTCTACCTGGGGTGCCCATCCACA TACCATTCCCCTACCTTCCAGTTCCATCCATTCTGAGAACCCTTCTGGTAAAGTTCTATCTGCATTATCTGTTGTTGGTG GAGAACGCAAAGCCCACAAGAACCTAACCCCACTACCTTGAAGTCCCAGTGCAATCTCTCTTGTTTGAGATGGAACAAAG CTTCCCATGCTCCCAAAACAGAGAAAAACAACAGAGGAATCTGGCTGCTCATCTAGCCATTTGAAGATACGTTCATGCTG TGCTTGGTCTAACTTTGGATTTGGATGGCCTTTAAGATCAATCACAGGACCAATAGCATAGATTGGAGGAGTATGATCAT CAGATAATGCATCAATAACATCATGCTCCAACTCAGAAAAAGTGTTAACAATAATCCCTCTGGTTTCTCTGAACCTCTCA GCAAGCTTGTAATAAGCAACATATCCACCATCTTTGTTAAAACAAGCATCAGGTAAAACACTTGGAGGAACTAGATTGGT GAAACCAGGAATCAACAACTCAGGATCAGATTCATTGAACACATCCTCAATCTGACGTTTCAGATGGGATAACATGAGAC CCAAAAATCCAACATTTGATGGAATAAATAAATAAGAAGGGATACCAAGTTCATTTCCCACATCAATTATGGGAACACAG AAGAAATCTAGTACCAACCCCACAACTGGGTTTGGATTAGATGATAAAATGTTTTGTACTGTAGCTTTCACATGGGGTAT GAGGCTCTCCATGAAGGTCAGGATGTAGTGTTCAGGAGACTTCAGAAACTCCTCATTAGGTGGTTCTACTTCAGGAAGAT CAATGAGTTGGATCTGAGGCTGTGAAGACAAAACTGTTTTGATGTATGAGTCTGAAGGAATAAGAGGGAACCTGATGTTG AGGACTGTGATGGAAAGATGGTTATGACGGTTGATTAAGAGCTGTGCAAATTCCAGGGCTGAGGCCAAGTGGCCATGCCC AGGTGCAGGAATGAAGATAAGCTCTGCTTTCTTGTTCATCTCACTCACATTCGAAGCCATTCTCTTTGTTCTCCTTGTGT GGTAGGAGTGGGAGATGAGTACAGTGTTTTATAATGTGCACATTTAATGTTGGTCAAAGTGTG
CDS sequence (LotjaGi1g1v0121400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACCCATTAACCCTAGTGAAGCGAATCCAGAACATCAATTCAAAGGAAGCAGCACTTGGCATCGGTGAAGAAGCTTC ATGGCACGCCAAGTACAAAGATTCAGCTTATGTGTTCATTGGTGGCATTCCCTTTGATCTCACTGAGGGTGATCTCCTCG CTGTTTTTGCTCAATATGGAGAGGTTGTTGATGTTAATCTTGTGAGGGACAAAGGTACTGGCAAATCATTGGGTTATGCT TTCCTTGCATATGAAGATCAAAGAAGCACAAATCTTGCTGTGGATAATCTAAATGGAGCACAGATTTTAGGTAGAATTAT TAGGGTGGATCATCGTGATAAGTATACGAAGAAGGAAGAGGAAGATGAAGAGACAGAGAAGCAGAATCGGGAGGCACGCG GTGTTTGCCGACAATTCCAAAGAGGTGAATGTACTCGTGGTGCTAGCTGCAAATTTTCTCACGATGAGCAAAGAGCTGCA AACACTGGTTGGGGTCGTGAAGAGGACAATCCAAAATGGGGTCATGACAAATTTGAGGGTCCTAAAAAAGAAAGAAGACC TGGCAACAACCAATCAAATCGTATTGGAGAAACTATAGACAGAGATTCACGCTCCAGAGCACAGAGTGAGATGGGATTAG ACTACCAACCCAAGAAAAGTGATAGAAGAGATGAGAAAGTGTCGCAGAGGCATGATGGTGATGATAAATTTGAGGGAAGA GAAAATAACAGTAGAAGAGAAGAAAAGAGATCAAGAAGGCATGGAGATGATGAATTTGAACACATACCAAGAGAAGATCG ATATAGGAGAGATGACAAAAGAGCAAAAAGGAATGGTTATGATGGTATGGAACCTGAGCCAAGAGATCATCATAGAAGGG AAGCCAAGAGGTCAACAAATCCAGATGATGCTGAGTTTGAGCCCCAGTCTAGAGATTCTGATATAAGGGAAGAGAAAAGA TCCAGGAGGCATGATGATGATGATTTTGGAAGTAAGTCACGACAAACTCATAGTAACAGGGAAGATAGGAGACCGAGAAA GCACACTGAAGATGAATCTGCAGCAAGGTCAAGAGGAGATTATGATAGGAAGCAAGATAACAGATCATATAGAGATGATA CTGATCGATCAGAACCAAAAGCAAGATACGGTTATGACAGGAGAGAAGAGAAGAGGTCGAGTAGGTGA
Protein sequence (LotjaGi1g1v0121400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNPLTLVKRIQNINSKEAALGIGEEASWHAKYKDSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYA FLAYEDQRSTNLAVDNLNGAQILGRIIRVDHRDKYTKKEEEDEETEKQNREARGVCRQFQRGECTRGASCKFSHDEQRAA NTGWGREEDNPKWGHDKFEGPKKERRPGNNQSNRIGETIDRDSRSRAQSEMGLDYQPKKSDRRDEKVSQRHDGDDKFEGR ENNSRREEKRSRRHGDDEFEHIPREDRYRRDDKRAKRNGYDGMEPEPRDHHRREAKRSTNPDDAEFEPQSRDSDIREEKR SRRHDDDDFGSKSRQTHSNREDRRPRKHTEDESAARSRGDYDRKQDNRSYRDDTDRSEPKARYGYDRREEKRSSR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 297 | 297 | 2.1E-91 | – | |
| PANTHER | 1 | 297 | 297 | 2.1E-91 | – | |
| Gene3D | 26 | 128 | 103 | 3.1E-26 | ||
| CDD | 27 | 111 | 85 | 2.41749E-56 | – | |
| SUPERFAMILY | 30 | 116 | 87 | 6.99E-26 | ||
| ProSiteProfiles | 36 | 114 | 79 | 18.547 | ||
| SMART | 37 | 110 | 74 | 8.5E-24 | ||
| Pfam | 38 | 108 | 71 | 5.8E-19 | ||
| Gene3D | 129 | 199 | 71 | 1.3E-7 | – | |
| ProSiteProfiles | 130 | 157 | 28 | 15.713 | ||
| SMART | 132 | 156 | 25 | 1.7E-5 | ||
| SUPERFAMILY | 132 | 155 | 24 | 2.35E-5 | ||
| Pfam | 135 | 155 | 21 | 1.0E-6 | ||
| MobiDBLite | 154 | 395 | 242 | - | – | |
| MobiDBLite | 160 | 190 | 31 | - | – | |
| MobiDBLite | 215 | 395 | 181 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi1g1v0121400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…