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LotjaGi1g1v0121500.1

Overview

Field Value
Gene ID LotjaGi1g1v0121500
Transcript ID LotjaGi1g1v0121500.1
Lotus japonicus genome version Gifu v1.2
Description 30S ribosomal protein S18; TAIR: AT1G07210.1 Ribosomal protein S18; Swiss-Prot: sp|P62659|RS18_THET2 30S ribosomal protein S18; TrEMBL-Plants: tr|A0A1J7FPB5|A0A1J7FPB5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0121500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:19145586..19153414) extracted from Lotus japonicus Gifu genome v1.2.

GGATGGGAAAGAAGGAGGGAGGATGTGAGGACGGGGTGATGGGCAATTGATACGAGATTTTTTTCATTAAAAGTATTTTA GTATTTTTCCAATTTAAGAATAATATATTTATTTGTTGGGTGGTGACAATAGCAATTCCTCACAATTGGGTTATGGTCTA TGGGTAGTAAATGAGAGATTCACCCAAAAAAACAAACTTTGGGCCAAACACTTCTGCAGCCCTAACTCTCTCCACTCCCC TTCTCCCTCTGCAAGTTCCACCGCCCGCCGTGCTCATTGTTGTGGACGACATCGCCGCCGCCGGCAGCCGCACTCACCTG TCTCAGGTATGGTCTTTGTTCCATCTGGTGTCTTTCGAATGCAGACTTTCACCGCAACTAAAACTGAAATGAACATTGGT GTGATGAATGAAACGATTCATAAAACTGAATACCATTATCTATTTCTTTACACTTTTGCAATGCAATGATTCTTCTTGAA TAGGGAGATATTCGACAAGTTTGATTTCAGTGGTGAAATTGTTTTTATTCTTTTGGAATTTCTGTAATAGCTTATGAGCT TATAAATTAACATTTTTGTTTGAGCAGGACAAAAATGAAGATTGTTTCACTTGCACTCAGGTCCTTGAGTGGCAATTTAT CTCATAGGTTTCACCAGACCCGAGGTCTTTCCCTCTGGAATTTTTCAGGTACCTAGTTAGTTTTGTTTCACTGTTGCTGA TTCAATAATATTGATTTTAATTATTGGGTTTCAATGAAGTTCGAGTTTGCAAATCTGTTTTATTTTTAATAACACGCACT TGGTTTGATATGCGGGATTAATAATCTTCTTACTTGTTCAATGTTTAAGCAGACAATGGACCTGCTGATCAGAAGACTAA TAAGTCAGACTCTCTTGATGAGTATGAGCAGCGGATGTTTGGTTCTGATAGATACTCGAAAATTGATGCCATTTTCGATA GGCATAATCGACAAGGAAAGACTCAAGATAGATCGAGTTCAGTTGATGCTGGAAGGTCCATGATTGATGATCTAGAGCAA AGTTTTGACACATTATCTGATGGATTGGATGGAAAACTCAAGGAGGCTGCCAATTACTTTGAATTTGATCCAGAGGAAAT AGACAAAGAGGATTATTCTTTTCGATATGATACCACTTTTCATCCTGGTTCAACATATAATGCGAAGGTATGGTTTAATG GCAATCCCAAACTCACCTGGCTATCACTGTTTTTTTATATTTAGTTTCACATGTTCTGTGTATATTTAAATTATTTCTAA TATTTTAAAATTCATATTAGGCAAAAAAGGGTATTTTATAATTTAAGTCTGAATTGATCTTTGATGTAGGTATAAGTTAT ATATAGAAGTTTGTAGGAACTATTTCATGAAGTATAATTAATAATGTTTTCTGGAATATTGTTATACATTGGTTTCTTGG TATCCGTTTGGTGGGCAAGATAAGTTGACAGTGGATTTGCGGTCATCAGGGTTAGCAGCCCAATTTGCGTCACAGAACCA TGAATAAAGGAGAGGAAGGTGCAACAGGGTGCAGAAGAATACCAGAACTGATAGTTTGCTAAGATCTTGATTCCATAATG GAAACAGTAAGAGGGAGAGAGGGAGAGGGAGGGAGCGAGGGAGAGAGATAGGGAGAACTGAAACTAACTTATAAACTGTC ATTAACTGACTGCAAGTAACTCATAGGTTCAGGATTCTCTACATTGATTGTAGCTTAACCATATATACTCCAATATATCC TATATGCCGTTTGTTCCTATCCGTCCCAAACTCCTAAATATAGTTTGGCATATACTATCTTGTATATATAGTTTGGCCTC AGCAACCCTAGATGTCAATTGGCCCTTACTGTCCTAGATTCAACTTGGCCTTAGCTTTCCTACTCATTGTTTGGCCCCAA CTTTTGTCCGCAACTTGACCCTGGTTTTTGTCTCATGTGTTTGGGCTGCGACTTTTTCCCAAATATGATTTGCCTCAACT CTTGTCCTAGATGCAGTCTGGTCTTGGCTTCTATCTCTGATGCGATTTGGGCACGATTTTCGTTTGAGTTGACTTTCCAA ACATGTTTTGTGAAGTCCTTATATATTTTTCTCTTTAAAAGGTTTCGTTTATAACAAGGTTAAAGTAGTAAATGCCAGTC GGAAGAGGAATGATAGTTGAAAAATATCTTACCTCATCATTATTTCTTAGAATATGGGCTAGGCCTAACTCTACCCTAAA AGCTAGTTCATGTTGAGGATTGCCCTACTCTTTATGACGACTTCGCAGTGTTGTTAAATAGCGGTTATAGCGCCGCTATG CCGCTATAACGTAGCGGAAATTCGCCGTGCCGCGATCGCGATGCCGCGACGTAGCGGCAAACGCGATAAACGCAATAGCG CCGCAAAACTGAATAGCGCCGCGACGGGCAAAGCGAAAATAGCGGTGGAAGAGAAGATCACGTGTGATTTTAGGACTTTT TTTCAAAAAGGCACCGCTTGGGAGGTGGGAATCAGCCACCGACTGAATTAATTGTACCCAATTAATGGAAGAAAAGTTTT ATAACTTAAAATCTTCACTCTATAAAAGCCTCAAAACCTTTCGAGTTTTCCCTTCTCTCTTCCTCCTTCTACATCAAGCT TCTGACCCTCATCTCCGGCAACCCCAATAGCTTTTCTGATGACTTTTCCGGCGAGTTTCTGGCTCCCATCTCTTCACTCT GCCATGCTCTGTTTTTTTGTTTTTTTTTTTATTTCTTTCTTTTTCTTTTACGTACTCTTCCGTTTTTTGTTTTTAGCCTC TGTTTACTTTTTTCATACCCTGTTTTCTTTACTTTTCTTTTTCCCTTCCTTCTTTCTGCACATTTTCAGACTCTCTTTTT CTTTTTTTTTTCACACTCTGTTTTCTGTTTTTTTCCGTCCTGTTTTGTTTCTAATATCTGTTCTTCCTTTTTCTCCTCTC CCATCATGATCTGTTCTGTTTTTCTTCTTCCATTGTGAATGTGAACCTATGTTTCTAATATTTGTTCTTTCTTCACATCA TCTTTTGTTTATTTTTGCCATTACATACAATGTTTTTTTATTTTCTGTTTTTTTTCCCCTGTTTTGTTTCTAAAATTTGT TCTATCATGATCATTTTATGCATTTCATTAGATGTCTTAATTTTATTTATTTTTTGCAACTGTTTTTTACTAGCACAAAC AGCAAAACAAGCTGTTTTTCTATAATTTTTTTTACTTATTTTAACCGCTATGCGGATACCGCTATTTGCCCGCGACGCTA TCCGCTAAATGAAATAGCGGATTTTGGCCTCGCCGCGATATTCCGCGATCGCGATTTGACAACACTGCGACTTCGTTACC TATACTGAGACATATCATGGTTTTTAACCAAAGCAAACTATATCCAGTTTAAAACCACTTATATGGTTTGGTTTTATTAA TTGAACCAGTTTTATCCTCTCAAACCGGTTATGAAACCGATTTTAAAATTAGATATGGTTCAAAACCAATTTTAAAACCG GATATGATTCCAAACAGGTTTTATTCCGGAGCGTACATAGAAAAATTAAGAACATCGGAAGATATTGTTAAAGATGATCT CATTATCAATAATATCCCTCATAATTTAGTTTTTGATCGAGCTCAAATGGCGTTGTGTGATCCATATAGCCGACCTCACT TAGTGGGATAAAGCTTTTGTTGTTGTATTGTGTTAAATGTGTGGGTTACTGGCACTGCATTGCCAAAAATACCTTGACAT TTCCGTTTTAGTTTCCACACTTGCTCCCTGCATCTAACTAGATCTTACTTTCAATTTTTTCTAATGAGAGAGAAAGAGGT ACTAGTTGTGGATATGGTTTAAAATATAAAATAGATATATGTTATGACCGGTTTTAATTATCCGGTTTTCTAAATTTGGT TTTGGTTTGGATCAGAAAAACTGGTTATTTTGAACACCCTACTGAGACAGGTTGCTTGATAGAGACTGAACAGAAATTAG AGTAACAATGGAAGAATTAGGACAAAACAGACTCAAGGGAAAAACAACAAGAGAGCACTCTCTCTCTCTCTTGCCCAAGC CAAGAGGCCGAAAAACTATATCCAAAATCATTTCTACCTTTTCACTCTCTACCCTCTCACCTATAACCCCTTTTCCTAAC CCATTCTCTTTCCTTTCGTGTCATGCTTCTCTCATGCACCACTGAGTGTTCCTTTGCCAGATCCCATACCATGTGTCTTT CTGGAATATACTTTCCAAGTTCAATTCCCTCCTTGGTGACCTGTTGTACCGGTACTCCTTCAGGTATGACTTGCTGTACC GGTACTTCCCTAGATGCCACCTCATCTCCTTGGGTCTCATTTCTATCATGGCTGATAACAGAATGAAACAAAGGCTATGC TAAGCTATAATATACTAATATTATTCTGTCACAAAATATGTTAGGATATATTATATTATCAGTTAGAATTTGTTTTCATC TTTCCTTATTTTCCTGATTTGGTTTTTTTTTTAAGGATTAAGAGTCTAGTTAGATATAAATTAGGATCAGTGTTTTATTT TTGTAACATATCTCTTATCATTCACTTCACCATCGATAATAGATTTCAATTATTTTGAGTGTTCCTTTTCCTTCTCTATA TTTGAAAGACTAGCCCTATACTTTTAACAATCTTAAAAATATTAAGATATAAAATTAAGTCAACCTCTTATATGGAGGTG GGGGCTGTTATTGCCTGATAGAGGCAGAAGCCATGGAGAATCTTTATTGCCTACCAGAACCCACACAATTTGAAACTGAC AAACACGATTGAGCTGGAGCATATGCTGGGACTCTTCACAAAAGATTTAACGGTGAAGATTAAAACTAAACAATGGTCAA GATTGATTTCATATTAAATTACTCCCTCCATTCCAAAATATAAGTTGTTTAAGGTTATGGACATTGTTTAAGAACTCATC ATTTGATAAATATTTTGATTGAAATACCCCTATTTAAAGTTGTGTTATATTAAGGAGAGAGAAATGTTATTATTGGTTAA GTGCATAGTGAGAGTTGTGATAGGTGAAAATTAAAGGTGGTAATTAAGAGATATAATATTAAATGAGGGTATATACGGAA GAAAGTGAGAAAAAATGCTTTGGGTTTGCAAAACAACTTATATTTTGGAACATAGTGTAAATGCTAAAACAACTTATATT TTGGAATGGAGGGAGTGTTCATAAATTTACAGATATAACCATGCAAGATTTGCGATTCATGTGGATTAATTTATTGTTAC TACTATTTACCTTCAAGGCTGCCAAATCTTCTTCTTTATTATATTTATAGATATAGTTTGGTTGAACAGTATCTTGATGT TTCATGGAATGTTCAGCCTGTGATCAATGGATATTGGAAATCACATGGTAGGCATCTCTAACCACTTAGTTTATTTTATT TTCATGATCATGAGATATCTGCATCGAATGGATCAATTGATATCAGTTGAAAATGAAGCCAGGACTTTTTTTGCTAGAAA AAGCCAACATATGCGCGGGAGAAACTTAACTGGCTGTGTTCGTCTTGTATGATCTTGAAATATATAAAACTACCTTTTCT TGCTGATATTCCTAACAAGAAAAATTGTGTGGTGTAGTGGCACTTTTAGAAATTTAGGTAGCTGGACATGATTACTGATG CTTTCTCTCTCTGCATCTTTTCCTTTTCAAATTGCGGTCATAATGTGGATAATTTCAATTCATTAAAGGAGACATGAAAT AACATATACACACTGTATTCTTAAAATTCATTCAGTGGTATGATTAACTAGTAATGTTGATAAATGCCTTTGAGCTTGAC AAATGCTATGGTTATGTACGTTCCCTGCTTGGCATATGTGACCTGTTCTCCATTGTTGTTTCTTTTCTATACAATTTATT GTATTAATTTTCTGATTCGTGCTGTATCTCCTTTCATACAGGATCTCGACCTTACAAAACCTGGTGTACAAAAACCTCCA ATCAGGCCCGAATTCAAAGTAACCACGAAAGAAGTTCTTAGTCAGGCAGATTTCAGGGTTAGCACTTATGTCAGAGTGTT TCCTTTATAATAGAGTCTGTATGAATATTTTATTTGTACTTATGCTTCTGTGTTAAAGTAAAAATTGTCACGTACATGAA TTTATTTTTTAGTTAACTATTATATGATATAATGAAATAAAAACAATACAAACTTTGTTAATGTGTGTGTGATTGTTGCA GAGTTATTGTTGAGATATAGTGTTGTAATATATAGAAGCTAGGCATGACAATTGTCAAAAATATCTGATACAGATTGGTT AAGTTATGTGGACAGTGCCCCCTATCTTATAATTTTAGGAATTGTTTTTTGGAAACGGTGTATGAGTCAACCTCACTGGC TTAGTGTGATCTATATAGCCGACCTTAGTTAGTGGGATAAGGCTTTTGTTGTTGTTGGTGGTGTATGAGTCAAGTGGAAG TCCGTAACTTGACATTCAGCTTCTCCAATATGTATTATTGGTGCTGTGACAAAGATGACTTTGTATGTTACCCAATATAA ACAAAGAATCATTTGTATAGATTGCAGATTCTTTTGAACAAGGGTGAAGATTTATCCTCAGTTTCTCCTTAAGTAGTGTG CCTGACTTCTTTAAATCTTAGAGCCAGATTGGTATCTCTACAAAATTGTGTGAACATTTCAGGTTGTTTTTCGTATGCAA CTCATTCCTAAATCTTTTGCCTGTTTCTTGTTATGTTATTCTGCTAAAGTAATGTTGATTTATAAATGCTAATTTTGGAA GGGATCTTAGTAGTCTTTAATGTTCTTATGCAGAATGTAAGATTCCTGGCAAACTTCATAACAGAGGCTGGAATTCTTAA AAAGAGAAGCATGGTGAGTTCTAATGTACTGTTGCCTGTTGTGTATATTATAATCTTATTTTAAATTGTGGGATCTTACA TACTGTGCCTTCTTGTTCATTGCCTAGACTAAAATTAGTGCAAAGGCTCAAAGGAAGGTTGCTAGGGAGATTAAAACTGC CCGAGCTTTCGGCTTAATGCCGTTTACAACAATGGGTACAAAGTCATTTGCTTTTGGGAAAACCATGGAGAATCTTGATG CTGACTTCGCGTACAAGAGTGATGTTAGAAACGTCCATGAACTTGATATGGAAGGTTGAAATGTCCGGCAAGAACTTTTT CTACTTTTTAACTTCCTCTCCTGTTTACCTTGACTACTAAGGTACTTTGTTATGTTCTAAACCCAAATGGTGTATTATTT ACTTCTTTCTGAAGAATACAAAGGATTGTCATCCCAAAGTGCAAGATGAATAATCTTTGTAAGGAGTTTTCACAGATTTT CTTATGATATCAATAAATAGGTTTGATTTTAAATTTAAATATGGTTTAATTAATTCAATCATAAGTAGATTTTCAACTTG CATGAAGAAGTCATGTTCGTTTGTAATATGAATTGGAATTTTCTATTTCTGAAGTCCAATGGGGCGTATGGAATATTTGA ATAACTTGGTTGTCTACAGCGTGATCGGTTTTCTGGATAACATGGTGCTAAGAACGCAGTACCTTTTTGTGTGTAACTGC TATGCTTGAATTGATTTCAATTTACTTTAAAAATAGTAGGAAATAATAACCATTCATGGATGGTTATTTGTACTGGTGAA AGAAGTAAATTTCTGTCCTCCTGAAATTTCCCCCCTCTGGTGGAGGTTCCCACCTGAAGCTTATGTTAAATTAAAATCGA TGTTTATGGTAGAGGATCTTTTGGCAGAGCAGCTAATAGGATGTGTAATTTCTTGAAAGGCTAGACATG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0121500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAGATTGTTTCACTTGCACTCAGGTCCTTGAGTGGCAATTTATCTCATAGGTTTCACCAGACCCGAGGTCTTTCCCT CTGGAATTTTTCAGACAATGGACCTGCTGATCAGAAGACTAATAAGTCAGACTCTCTTGATGAGTATGAGCAGCGGATGT TTGGTTCTGATAGATACTCGAAAATTGATGCCATTTTCGATAGGCATAATCGACAAGGAAAGACTCAAGATAGATCGAGT TCAGTTGATGCTGGAAGGTCCATGATTGATGATCTAGAGCAAAGTTTTGACACATTATCTGATGGATTGGATGGAAAACT CAAGGAGGCTGCCAATTACTTTGAATTTGATCCAGAGGAAATAGACAAAGAGGATTATTCTTTTCGATATGATACCACTT TTCATCCTGGTTCAACATATAATGCGAAGGATCTCGACCTTACAAAACCTGGTGTACAAAAACCTCCAATCAGGCCCGAA TTCAAAGTAACCACGAAAGAAGTTCTTAGTCAGGCAGATTTCAGGAATGTAAGATTCCTGGCAAACTTCATAACAGAGGC TGGAATTCTTAAAAAGAGAAGCATGACTAAAATTAGTGCAAAGGCTCAAAGGAAGGTTGCTAGGGAGATTAAAACTGCCC GAGCTTTCGGCTTAATGCCGTTTACAACAATGGGTACAAAGTCATTTGCTTTTGGGAAAACCATGGAGAATCTTGATGCT GACTTCGCGTACAAGAGTGATGTTAGAAACGTCCATGAACTTGATATGGAAGGTTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0121500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKIVSLALRSLSGNLSHRFHQTRGLSLWNFSDNGPADQKTNKSDSLDEYEQRMFGSDRYSKIDAIFDRHNRQGKTQDRSS SVDAGRSMIDDLEQSFDTLSDGLDGKLKEAANYFEFDPEEIDKEDYSFRYDTTFHPGSTYNAKDLDLTKPGVQKPPIRPE FKVTTKEVLSQADFRNVRFLANFITEAGILKKRSMTKISAKAQRKVAREIKTARAFGLMPFTTMGTKSFAFGKTMENLDA DFAYKSDVRNVHELDMEG
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13479:SF53
1 250 250 5.1E-97 –
PANTHER
PTHR13479
1 250 250 5.1E-97 –
Gene3D
G3DSA:4.10.640.10
142 226 85 6.3E-19
IPR036870
SUPERFAMILY
SSF46911
153 222 70 3.27E-16
IPR036870
TIGRFAM
TIGR00165
166 222 57 1.7E-10
IPR001648
Pfam
PF01084
172 219 48 1.9E-14
IPR001648
PRINTS
PR00974
179 189 11 3.6E-6
IPR001648
PRINTS
PR00974
197 211 15 3.6E-6
IPR001648
PRINTS
PR00974
211 221 11 3.6E-6
IPR001648

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003735
Molecular function Structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
Subterm of
GO:0005840
Cellular component Ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
Subterm of
GO:0006412
Biological process Translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
Subterm of
Part of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0121500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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