Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0133400 |
| Transcript ID | LotjaGi1g1v0133400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor bHLH; TAIR: AT5G65640.1 beta HLH protein 93; Swiss-Prot: sp|Q9LSL1|BH093_ARATH Transcription factor bHLH93; TrEMBL-Plants: tr|I3SE48|I3SE48_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0133400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:21457753..21460295) extracted from Lotus japonicus Gifu genome v1.2.
GAGAGAGAGAGAAAGACAGAGAAAAAGACAGAGAGATGGAGTTATATGACCATGATTTCTTAGAGGAAGAGCTACTGGCT CTACAGAAAGAAACACGGAGCAATACTAATCCAAGTTCAGAAAAAAACCAGCTTTTCTCCAATGATTGGAGTTTTGATCA CTGTTATGATCAAAACTCTTATTCTTTTCTTCCAAACCACTCTTCCCTTTGCCAACAAGTTCCTCAAAGTTACTACAATA ATAGTAGCAGCTACACCTTCAATGAAATCTACAGTTCCTTACTTGATGAATTCTCTGCACCCCAGATCATGGATTCATCA TCCTATAACACCCTCCTTGAGACTCCACTCAACACTCAACCATTTCTGGCTCAAGAAGATTACCCTTTGTCAGTGATGGA AGATGAGGATCTGGATTTGGAAACAACATGCAAAATGGAGCCAAACCAATCCCCTGAAGCAATACCTGTATTCAACACTG GTACTTGTTTGGAAAGAAAGAATAGAGCAAAGAAGCTTGAGGGGCAGCCCTCCAAGAATCTAATGGCTGAGAGGAGAAGG AGAAAGAGGTTAAATGATAGGCTTTCCATGCTGAGATCAATTGTCCCCAAGATAAGTAAGGTAAGAAATGACAATCAATC ATTCAATGAGTGTAGTTCTGGTTTTTTCATATTCAAAAGTTTTTACACTATTCCAACACAGGATTGAAATCTTTTGTCCC AAAATTATGTCTCGTTCTCCGTTCTTCCAATAAACTGTTGAAATGTCAATTGAAAGTTACAGTGTCAGTTTGTAACTGCT CCACTCATGTCTTTTTAATTGACATGACTAGATGACATTTGTAGAATTGAAAATTGAGACACTATTTGGGAACACGAGAT CTAAATCCCCCAACACCTCACCTTTTATGATAAAGTGGTTGAGGTATCAGGTATTGATTGTAAAATATTTTGGGTGTGAA TCAAACATTTTCCAAAGTAAAAACATATACATAAACTAGTTTGTGATTGTGTGTCATGCAAAAGTGCTAATTTGCTTGTT GAATGCTAATAACTACAGATGGACAGAACAGCTATACTTGGAGACACTATTGATTACATGAAAGAACTTCTGGAGAAGAT TAACAATTTGAAACAAGAAGTAGAAGTAGATTCAGACATGACTAACATCTTCAAGGATGCAAAGCCCAATGAAATCTTAG TGAGAAATTCTCCCAAGGTAACCTTAACCGGTAGTATTATAGCTTAACAAGACCCATTAAATAGAATAGTTGGATCAACT TCTCTTCATCAGAATTAGTTCCAGAACACAATAGCTACCCACAGAAGCTTCTCACCATAATCGATTTTTGCTTCAGAATC AATTTTAGAAGGGGTTTCAATCATGACTTAAGTCAAATTAGTAAAGTACCCCTCAAGAATCCTAATTTGAATATGGTGTA AGTCCTTATTTGATTTTCTCCCCTCTATGCAGTTTGATGTGGACAGGAGGAATATCAACACAAGGGTTGAGATCTGCTGT GCAGGGAAGCCAGGCTTGTTGCTTTCTACAGTGAACACCTTGGAAGCATTAGGCCTTGATATTCAGCAATGCGTTATTAG CAGTTTCAATGATTTCACAATGCAGGCTTCTTGCTCAGAGGTATGTTACAGATGGTTTTTTAGCATAGTCTAAAAATCAT TTGGTTGTTGTTTCTATATTCAATCTGCATGGTCTTTTTTTGTTGACCAATGGAGTTATAATCTATCTAATTATCCTATT TGTTATGTAACAGGAATTTGAGCAGAAAACAATTCTGAGTTCTGAAGATATCAAGCAAGCTCTATTTAGAAATGCAGGAT ATGGAGGTCAATGTTTGTGAGCATTTTTTTTCTTTTTTCTTTTTTGGGGTTGAAGAAACACTGCAAGTAAACTTTAGGTA TAGATCTTAGAATTCGGGCTAGCCAACTCTAGCTCAAAAGCTAGGCTGAGTGATTATTACTATAGTTTTTATAAGAACTA TTTTGATAATATTTTTCGTTAATGTGAGACATTCAACATATCTCACCCATAAGGTTGGACATTTGGAACGTGAAACTTAC AAGATTTGACATTTGCATGTGGATCATTAGTGGGTGACTCAATAAACAGATCTATCAGAGACTCTCATAGCTAGCGTAAG GAGAGTATTTAGCTCCCTAATGTACATTAAGATGCACAAGGGAAAACAATGATACCATTTTTCTTAATGTAAGCAAATTA ATAATTGATGTCCTCAGCAGCTTAAGATGGAGGTTTTTATCAATAATGGTGAATTGCTTTGTTCTCTGACAAATTCATCA TAATACAAAAGCCAGTTTGATGGAATTGCCAGGGTGTGATGACTCCTGCGTATGAATCTGACACATTCTGTATAATACAA AGTAGGGAACATTTTAAAGCTTTCTTGTTGAGGAGGGGCTGCATCCTTATCTACATAAGTATCATATATGTAATCTAATA TACATATTCATTTGTATGTAATACAAATGTTGGATGCCCCTCAGGACTATAAATATCCATATA
CDS sequence (LotjaGi1g1v0133400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTATATGACCATGATTTCTTAGAGGAAGAGCTACTGGCTCTACAGAAAGAAACACGGAGCAATACTAATCCAAG TTCAGAAAAAAACCAGCTTTTCTCCAATGATTGGAGTTTTGATCACTGTTATGATCAAAACTCTTATTCTTTTCTTCCAA ACCACTCTTCCCTTTGCCAACAAGTTCCTCAAAGTTACTACAATAATAGTAGCAGCTACACCTTCAATGAAATCTACAGT TCCTTACTTGATGAATTCTCTGCACCCCAGATCATGGATTCATCATCCTATAACACCCTCCTTGAGACTCCACTCAACAC TCAACCATTTCTGGCTCAAGAAGATTACCCTTTGTCAGTGATGGAAGATGAGGATCTGGATTTGGAAACAACATGCAAAA TGGAGCCAAACCAATCCCCTGAAGCAATACCTGTATTCAACACTGGTACTTGTTTGGAAAGAAAGAATAGAGCAAAGAAG CTTGAGGGGCAGCCCTCCAAGAATCTAATGGCTGAGAGGAGAAGGAGAAAGAGGTTAAATGATAGGCTTTCCATGCTGAG ATCAATTGTCCCCAAGATAAGTAAGATGGACAGAACAGCTATACTTGGAGACACTATTGATTACATGAAAGAACTTCTGG AGAAGATTAACAATTTGAAACAAGAAGTAGAAGTAGATTCAGACATGACTAACATCTTCAAGGATGCAAAGCCCAATGAA ATCTTAGTGAGAAATTCTCCCAAGTTTGATGTGGACAGGAGGAATATCAACACAAGGGTTGAGATCTGCTGTGCAGGGAA GCCAGGCTTGTTGCTTTCTACAGTGAACACCTTGGAAGCATTAGGCCTTGATATTCAGCAATGCGTTATTAGCAGTTTCA ATGATTTCACAATGCAGGCTTCTTGCTCAGAGGAATTTGAGCAGAAAACAATTCTGAGTTCTGAAGATATCAAGCAAGCT CTATTTAGAAATGCAGGATATGGAGGTCAATGTTTGTGA
Protein sequence (LotjaGi1g1v0133400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELYDHDFLEEELLALQKETRSNTNPSSEKNQLFSNDWSFDHCYDQNSYSFLPNHSSLCQQVPQSYYNNSSSYTFNEIYS SLLDEFSAPQIMDSSSYNTLLETPLNTQPFLAQEDYPLSVMEDEDLDLETTCKMEPNQSPEAIPVFNTGTCLERKNRAKK LEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILGDTIDYMKELLEKINNLKQEVEVDSDMTNIFKDAKPNE ILVRNSPKFDVDRRNINTRVEICCAGKPGLLLSTVNTLEALGLDIQQCVISSFNDFTMQASCSEEFEQKTILSSEDIKQA LFRNAGYGGQCL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 29 | 332 | 304 | 7.8E-154 | – | |
| PANTHER | 29 | 332 | 304 | 7.8E-154 | – | |
| Gene3D | 154 | 227 | 74 | 3.6E-13 | ||
| ProSiteProfiles | 163 | 212 | 50 | 15.18 | ||
| SUPERFAMILY | 166 | 224 | 59 | 6.28E-15 | ||
| Pfam | 169 | 212 | 44 | 1.0E-9 | ||
| SMART | 169 | 218 | 50 | 1.5E-11 | ||
| CDD | 170 | 216 | 47 | 1.32835E-4 | ||
| Coils | 202 | 229 | 28 | - | – | |
| CDD | 258 | 299 | 42 | 9.32869E-6 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi1g1v0133400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…