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LotjaGi1g1v0133500.1

Overview

Field Value
Gene ID LotjaGi1g1v0133500
Transcript ID LotjaGi1g1v0133500.1
Lotus japonicus genome version Gifu v1.2
Description Phosphoglycerate mutase family protein; TAIR: AT1G58280.1 Phosphoglycerate mutase family protein; Swiss-Prot: sp|Q9FGF0|PGML1_ARATH Phosphoglycerate mutase-like protein 1; TrEMBL-Plants: tr|G7K608|G7K608_MEDTR Phosphoglycerate mutase family protein; Found in the gene: LotjaGi1g1v0133500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:21482808..21489029) extracted from Lotus japonicus Gifu genome v1.2.

CTTACACAAAGTCCACAAGGGATGACCAAGTGAGCATCATTACGCCACTAGTTCTTATATGAATTACAAAAAAGATTTTT CAAGGGCCACAAGTCATACAATTTTTTTTATAGACCTATTTAAATTTGACATTATTTGTTAGGATGCAGGGTTTTTAAGC CAGTTGGTGCACCTAAGCAATGTTGCTTACTTTGGGATGTCGTTGGAGGTTTCTAACATGAAGTTGCTTGTTCCTAAAAG CTTACCAACATTCCTTATCTAAGCAACCGATTCTTAGCCAGTTCTTAAATAAATTTTTTTTTCTCTATCACCCATCAACA AATTTATGGTTAAAAGAAAAGGTAAGGAATCTGACTCATGAACATAAGGTAAATCAACCGATCCAATACATTAAAAATTA AAAGAAAAATTACTAAAGGAATCCAAAAATTCCATAAGCAGATCCATAATAAGAAAATGACCGGAAAAAAAGACACCAGC TTGAAACTTGAAGCAACCCAAATTCAAATGAGATGAGGAGAGGGAAAAGGAGATGAACAACCTAATACATAAAAAAGTAT GGACTTTGCAAATACATGAAGGGGAGCTCTGATATGTGGTTGTAGACGTGAAAGGGAGCTCCAATCTAACAACGATGGCT TCCCTCCGGTCCGGCGACGACTTCAAGCTCAACAACCACAAACCTATATTAAGCAACCTCCAGCAGGTGATTCCCTTTTT GGCAAGGCATATGCTGATATGGATGATGCAACATATTGTTTCTCACTTGAAAAGTACACTTGGCAGTAGAAAGAGTTTAT CAAACATTATTATAATGGGAAAGCCAAACACCTTTTGAAGTTCTACTATTTCCACCAATCAGAAACTGCCACTGTTATTA ATCACTTTTGTAGTTTTGTTCCATCTCCCATTTTCTTTGAAGCCTTTTCCCCTCTTATCTCTGCTTTTCTTTCTCTCTTC TTTCTCCCTCGCTCGCTCGCTCGCTCCCCTGCACCTGCAACAACCTCTCTCTCTCTCTCTCTCCGCTCGCGTTTTTCTTC TTCCGTTCTGGTACGTCAAATGCAAACGCTGTTCTTCAAATCCATTTCCGATTGAATTTTTCTCACTTCACTTGCTATTA CAATCTCGTGAATCTGTGTTATTTGTTAGAGATAAAAATGTTCATTTCTGATTTTATTCATATATTAGATTTGAAATGAA ATTGAAAATTGCAATCATAGTGACAGTTGCTGAAAATCACAATCACAAAAAAATGCAGCTGAAATAATGAAGTTGTTATT GATCTTGATTTGAAAATTGAAACCATGTGATGTCAAATCAATGCGTCATTTCAGCTTCTTTTGATCTGATCGCGAACATA GTTTGTAGAATCTCCGTTTAGGTTTATACGATTGTGCAGTAATGATAGCGGAGCTTGTGGATTTCATTTTTTTATTTTTG TTTCAGATTCACTATGTTAAGATTTCTTAGCTTGTTTGTTAATTGTAGGAAATGTATAAGAATATATTTATGTATGTTTC TTTGATCACATGGTATCAGAGTTTCTATGTTCAAGTGGTATAACGATCATCGATCAATGTTTGTTGTGTGGATTGATTAG TCTAATTTGGATTTCAGTTTAAGGTAAATAGTCCTGTGCATTAAATTGAGGAGGCATGTTAGAAAGTTTAATGTAAAGTT ATTTATCTGTTTCCACTTTTCCAGATAATAGTTGTAAGTTTTTAGGTGACCAAAGGTTTAAACCATATTCTCAGGATATG CGGTTCTTTGAGAATGACTATGGCGGATCAGCGATAATCCTTGTAGTGGAATATTTCTGATTCCTTGTTGGTGCTGTTTA TTGTGTTGAGTTAGTAGCATGTGTATGATAAGATAGATTCTAGCTTTTCTGCATATATTCTTGCAGTAGCTTATAACTAT TGGGAATTTATGCTTGCAATAACAAATACTGATTGCTCAAACTTTTCTACCCTTACTTTGAGTGGGAATCTTGGAATCTG TCATTTTTGGGTCATATTAGCCTTATGGATTAGTCTTATGTATGGTTTTGTCTATGATTTTCTAAATACAAAGGGTCATG ACCTAACGATGACCGTGACCCAATCTAAAACCTTGGTCCTATGGCTACTGCGTTTGGGATATTTGATCAAAGATCCAATA AAAAATGTTCTATGCTTTGCTTTTGCCATTTCTTTGTCTATTTAGCTTAACAATTCTCTTTTTTCACTATGGTTTATATA TTGCCCTGGTTTAATGATAACTTCATCAATCACCATTTCGTGTTGGTTTTTCACTTGTGTATGACTGCAGGTATGGATAG TGCTGCAGGTCAAATTCTCTACCCTTTGCACCATTGCAAAACTGTTCACCTGGTTTGTAGCAATTCTTTCCTTGAAGCGG ATATGTGTTTCCCTTATCATAAGAATAAATATTTTTCCGGATTTATGACATAAAATTTAAAGCTTTACTCACCTGTGATT TTCTGTATGGACTGCAGTTCACTGGTACTAACATTATAAAATATCAAAATTAACTCCAGAACTGTGTGACTGTGATCTTG AAAAATATTTGGCACTGCATTAAATTGAGTTTATGCCAACTAAAATCAGGGACTTGGTATTATGGTCATTACATAAATAC ACATAATTAGTAGCTTGTGTCTAGGAGTATGTTGTATTCTGGCCCTTGAGATCATTCATTATTTGCTATATTAATGTTCT GTAGAACCTTGTATCCAGGTTAGGCATGCCCAAGGGGTTCACAATGTTGAAGGAGAGAAGAACCACGATGCATACTTATC TAATGATCTTTTTGACGCACACCTAACCCCTCTCGGATGGAATCAGGTAGTTGCCTGTCAAAGTTTCTGAATGTCATGTT ATTAAGTACTTCAGGACGGTTTTTGTATTATGTGGTTCAGTGGTTGATAACAATTTCCAAGATGATAAATCATAAATATT TCAGACTTTGCTGAAAAGTTTGGTCTGGTATTTCCATAATTTCATTTATCATCGAAGAAATCGAGTATTAATGATAACAT TGTCCTAGCATACATCTACCTCTGGCTAGTTTTATTTCCAGGTTTTACTGGTCAAACTTTTGTTGTTTAAAAGTCATGGT AGAATGCTTGTGCTTTGTGGCTCTGTGATAGGTTGATAATCTGCGAAAGCATGTGAAGGGACATGGACTATCCAGGAGTG TTGAACTTGTAGTGGTTTCCCCATTGTTAAGGTATAACTTCATTGTAATTAAGAATTCTGCTAGGACATGTATTGGTCTC ACTTTGGTATGTTAGCTACTTCTTTTACCATTTCTTATTAAAATTGTATATGCAAACAAGTTCTGAAAATTTTATTGAAC CATAGATGACACTGATTCTTATTGGTGATGTGATCTGAATGGCTATGAGCTATCTATTGTTCACCAAAACTAATACTAAT AACATAAAAGTTCTTTAGAAACCAGGGACTAGATAGCTTAGACCTGACAACTTGCCTGAAATCGGGCTAGAATTACTTGG GATAATAGTATGTCATTTGTGAAAACTGAAATGTCTTGGAGATTATCCATGGGTCAAACAATTCTTAACTTTTCTCCTGC AGTCTGTACAGACTACAGAGTACAGTAGATCACAAATATTGGTCTAGTTAGTGAAATTATCTGACATTACTATTTGAACT CTTAACATTTTATGTCTGCTGGGCTAATATGCTGATGAACGGATTTCTAATTTTGTAGACCTGTTATTGTAAATTTGTGA TGTCTGTCAAATACTCAAATACTAATATAGTTTAAAGTTTAAACCCTAGTTTAAATTATGAAAGTATTGCACTTTGAGGA AGACGTTTATAATTTCCTTTAAAATTTTGAAAAACTGGAAACAGTATCTACCATATATTTTTATGTTTAATGTGAGCTAT TTAGTTTAAGGATTGATATTGAGATGGAACTTGACGTCTTAGTTTGTTTTTTGCACTTCATCTTGTGAATTATGATATTG ATGGCATCTCTGCTGAAACCTTTTCAATTTTATTTATTTATATTTAGTAAGGCAAATAAAATCCTTTTGTCTTTGGGACT ATCATAAGTTGAAATCCAAAGTATTGCATTGCAGGACCATGCAAACAGCAGTTGGAGTCTTTGGTGGTGAAATATACAGT GATGGAATTAATGAACCTCCTCTGATGATAGAAAGTGTGGGGAGTAGTGACCATCCTGCAGTTTCTAGTTTGAACTGTCC ACCATTTATAGCAAAAGAGCTTTGCCGAGAGCAAATGGTATGATAAATTCTTTACCTCCCCTCCTATTGTTATTGAACTT CATTTGGTACATGAATCATTATGCTTTTGTATAATGCTTTATTTTTGTAATTCAGGGACTTCATCCTTGTGACAAGAGAA GATCCATCAGCGAGTACCGGAATATGTTTCCAGCAATTGATTTTTCACTGGTGAATGATCTTGTGATTCTTATCTTACAA TATGGTCTTGCAGATACTACAATCAAGTTTGTTCTGATGCAATGGTTGCTAGAGGATAATTAAAATTTGGTTTAATGGGA TTCTGCTTAATATATTTAGGTTGAAACTGATGAGGACACTTTGTGGACACCTGAAAGAGAGAAGAAAGAAGACGTTGCTG CTAGGGGATTGAAGTTTTTGGAATGGTGAGTGTGATTAAATAATTTTATCTGCCTTTCTAGCCAATAATTATGCATATTA TACAAAAAGAAGAAGAGACAAAGAGGCCAGAGCATACTGAAGTAAAGGGTTAATATTACCATAATTGAAGTAATATAAAA GACTTTTTCATGGATTGGGTTCACTTTAAGGTTTACTTCGTAACCATTTTTCACTAACTATTGTAATCTCAAGGCCTGGG GGGTTGACATAGGCTCCCTGAGGTGTCTTATCATGGGATCATGAAGTCTTTTCGATTTTCTTATTAAAGCATCACTGCTA TTTTGTGAAGTTGGGATTGCATTTGTTTTTACTATGTTTTTGTATTGCATCTGAAGCGCTTGTTTCCACTATTTGTGGCT TCAAATTTTGACAGTAATACCAAAATTCACTTTTGGATGGTTCTCACATTCCTGCCTTTTCTTTCCAGCTTGAATATCAT TTGAACAATGTGTTGCAAGTGTTATCTAGTGACAGAATGACTAAAACCAGAGAGCTGATATCTTTTTCCTAAATTCTTTT ATTGGTCCAGGTTGTCGACGCGTAAAGAGAAGGAGATAGCGGTTGTTACCCACAGCAGTTTTCTGTTTAATACCCTCAGT GCTTTTGGAAATGACTGTCATCCAAATATTAAGAGTGAAATATGCAAACAGTAAGCATTTCTTCTGAATATTCGTCTAAT CTTGTTGATGAACAACTATTAAGTTTTGATATATGCGGGATTAATAAATAGATAAGGTGTCATTTTTAATTTTTCTGACT TTATCATGGAGTTAATGTGGAAACTCTCTTTAAACCCTTTTAGAGTATTATTATTTATTCTTTTACATAGTAAATACAGG AAAGTTCTTGCTAAACACTAAACAAATATGTAACTTAATAGAAATCTTGCAAGTTTTAACTAAACTAGTTCTTTGCAAGC CCTACATGTGTTAGACCTTCATAACTCATAAGTCTGATTGAATCTTTTATGGTATTCTTGTTTTACAGCTTTGCTAATTG TGAGCTTCGTTCAATGGTGATCATTGATAGAGGGTGAGTATTTTTAGTTGCAAAACACAGAACTTAAATTCAATCTTATG CAGAAAATTCATTTGAGTTTTATACATGCAGTGTGATTGGATCAAATGAATCAACTACAAACTATCCAGGAAAGATTCCT CGTGGCCCTGATCTTCCCAGTGAATCTGCTGACTAGAATCATTCAAAGTAAAAGGCATGCCAAAGAGTAGTTCCACTTCA TAACTGGTCTTCTGTTATAGTCATGGAATATTCTTTTGTAGAATAAGAATGTAACTTGCCAAAGAGTAGTTCCACTTCAT AACTGGTCTTCTGTTATAGTCATGGAATATTCTTTTGTAGAATAAGAATGTAATGATTTCTTAATTTGCTGGCAAAGGTT CAAATCTTTTGTTTGGAACAAATTATATCCGTTAGAGGAATTTTATAATATATAGAAGAAGATCATAGGGATTTTATAAT CTTAGTCCGGTCCCCCCTTACGCACCTTAGGGATTTTCCACTAACTTCTTCGAAGTTACAAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0133500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATAGTGCTGCAGGTCAAATTCTCTACCCTTTGCACCATTGCAAAACTGTTCACCTGGTTAGGCATGCCCAAGGGGT TCACAATGTTGAAGGAGAGAAGAACCACGATGCATACTTATCTAATGATCTTTTTGACGCACACCTAACCCCTCTCGGAT GGAATCAGGTTGATAATCTGCGAAAGCATGTGAAGGGACATGGACTATCCAGGAGTGTTGAACTTGTAGTGGTTTCCCCA TTGTTAAGGACCATGCAAACAGCAGTTGGAGTCTTTGGTGGTGAAATATACAGTGATGGAATTAATGAACCTCCTCTGAT GATAGAAAGTGTGGGGAGTAGTGACCATCCTGCAGTTTCTAGTTTGAACTGTCCACCATTTATAGCAAAAGAGCTTTGCC GAGAGCAAATGGGACTTCATCCTTGTGACAAGAGAAGATCCATCAGCGAGTACCGGAATATGTTTCCAGCAATTGATTTT TCACTGGTTGAAACTGATGAGGACACTTTGTGGACACCTGAAAGAGAGAAGAAAGAAGACGTTGCTGCTAGGGGATTGAA GTTTTTGGAATGGTTGTCGACGCGTAAAGAGAAGGAGATAGCGGTTGTTACCCACAGCAGTTTTCTGTTTAATACCCTCA GTGCTTTTGGAAATGACTGTCATCCAAATATTAAGAGTGAAATATGCAAACACTTTGCTAATTGTGAGCTTCGTTCAATG GTGATCATTGATAGAGGTGTGATTGGATCAAATGAATCAACTACAAACTATCCAGGAAAGATTCCTCGTGGCCCTGATCT TCCCAGTGAATCTGCTGACTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0133500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDSAAGQILYPLHHCKTVHLVRHAQGVHNVEGEKNHDAYLSNDLFDAHLTPLGWNQVDNLRKHVKGHGLSRSVELVVVSP LLRTMQTAVGVFGGEIYSDGINEPPLMIESVGSSDHPAVSSLNCPPFIAKELCREQMGLHPCDKRRSISEYRNMFPAIDF SLVETDEDTLWTPEREKKEDVAARGLKFLEWLSTRKEKEIAVVTHSSFLFNTLSAFGNDCHPNIKSEICKHFANCELRSM VIIDRGVIGSNESTTNYPGKIPRGPDLPSESAD
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43387
1 271 271 6.5E-141 –
PANTHER
PTHR43387:SF27
1 271 271 6.5E-141 –
SUPERFAMILY
SSF53254
16 245 230 4.71E-31
IPR029033
Gene3D
G3DSA:3.40.50.1240
16 254 239 2.3E-29
IPR029033
CDD
cd07067
17 109 93 6.0864E-13
IPR013078
SMART
SM00855
17 212 196 3.1E-8
IPR013078
Pfam
PF00300
19 90 72 3.2E-6
IPR013078
MobiDBLite
mobidb-lite
253 273 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0133500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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