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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0136300 |
| Transcript ID | LotjaGi1g1v0136300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GATA transcription factor; TAIR: AT4G24470.1 GATA-type zinc finger protein with TIFY domain-containing protein; Swiss-Prot: sp|Q9LRH6|GAT25_ARATH GATA transcription factor 25; TrEMBL-Plants: tr|A0A0S3RM66|A0A0S3RM66_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0136300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:22201054..22208042) extracted from Lotus japonicus Gifu genome v1.2.
TTCTTCTCTCCCTTCTATTAGGCCTTATATTGTCTTGTCTTCTTCTGAGCTGGCTTTCAACTTCACCTTCACCTTCACCT TCACCTTCATCTTCACTCTCTTTTCCCTCACACACTCTGTTCCGAACACGCAAAACACACCACCCAAAACCCCCCAATTC TCTTCGCAATTCTTCCCCAATTCAAACTCCAATTAGGGTTAGGGTTTCAATCTCCCCATGAATTTCCCCTGTAATGGTTC TGAACCCCCTGGTTCAACCATGGAGCCACCAATGTATGGACACTCCCAGCCCATGAACATGCCCGGCCAGATCGCCGCCG GAGATAGCGACGAAGCATCCGGCGCCGACCACGCCATCGACGCAAACCACCACATTCAGTACGAATCCAACCCGCTCGAA GATTGTAGCGGCGTCGCCGTCGAGGATGTTACCTCCGACGCCGTTTATGTTTCTGGCCACGCCGGTGGTGGCTCTGATTA CTCTTCTCTCGTTCCTCACTGCGATGATTCTAGCCAGCTTACGCTGTCGTTTCGTGGCCAAGTTTATGTCTTCGATTCTG TTACGACTGATAAGGTACCATTTTTTCTTTGAATTATCAATTTTCCCGATTTATTCACCTTGATGGATGAACAGCATGTG AATTTATTTTTTGTTTTTCGCTTTGAACTTTAAGAAGAAGAAATTTTAAATTGTAATGCTTTGAGGATAAAATTGTTGTT CATTTGGTTTCACATGACAGGTTCAAGCGGTGTTGTTGCTGTTGGGTGGATGTGAACTACCTCAAGCGGGTACGCCATGT GTGGATACGGCGGCTCAACAAAATCAGAGGGTATTTTCTGATAGTAGAAGAATAATGCACAACTTAGACACACTTGCATT GACATCAATTTACCATTTATTAGGTAGCTTAGATAATAATCATCAGTTACGGGTTACGGGGTAGTGATAGTCTCCTACGC TGTTCCTACAGCCAGATACAAACAGAGTGATTATTTGTGATTTGTGTATACATTGGGATCGAGTATAGGAGAGTATAGGA TCGTAAGTCGTAATTATCGTAATGCAACATAGTGAGCACTAGCAGAGCATGGTAATGAATACTTTGCCAGCCTATGTCTA GGTAGCATACATTTAACAAAATTTGTAAGTATTTTGATGTCTGATGGTATTTTTTGTTTCTAGTATCGGGTGATGACTAT CATAAAACTCCCTAGTAAATGGTAGAGTCAAGAGCGTGTGTGTGTTTGTGATGTGAGTGCAAGTGTGTGTGAATGACACT ATTCATAATACAGATCATTTGAAGTCCAATTGCACTGTGCTTAGTGGCGTTTGTAACTCTTTGGTTCTTGCTGCAGGGTT CAATGGAATATCCTGCCAGATGTAGTCTGCCACAGCGAGCAGCGTCATTAAATAGGTTCCGGCAGAAGAGGAAAGAGCGA TGCTACGATAAGAAAGTTAGATATGGTGTACGTCAAGAAGTTGCACTCAGGTCTGATAATTTACCTACATATAAACTTCT GAATATTAGATTGAATTATTGAAGTAAACCTAAGTTGTGTATAGTATGAGCTTAAATGTTTTACTGCTTACATGATACAG AATTACAGATCCATCGTGTGAACGGTGACGGGTCATGGGATTGCTACTTTGCTTCTTTAAACCATTTCATTGTTAAGTGG TAGTCTGGTAGATATAGCATAGTTGAGCGGTATTTGAATCTGTTAGCAGGCTGGGCTTTGGGCTTAGTTTTACTGACAAC TATGTTGGCATTGAGTGCCCTTTTATGTAGAATTGTGCTGGGCTTCCTTTTCCATACAAATTTTCTCAGCTTCAGACTTC ATTATGTATATAATCAATTATGTTGTGATTTAGGCTTGAGTTGGAACTAAGACCCAGGTGCAGTCATATGAGCAGCTCCA TTACAAATATGTGGTTTAAACTTCCCTACAGTCAATTGTCAAACATTTATTGCTCTTCATTATATTTACTGTATTTTTAA ACATATATGGTGAACCAAGTATGAACTTGGGATGGCAATAGCTCGCTACAGCGGTGGTGCTGTTGTCCGCTCAGAAGGTG CTGTAGCAGAGTGCCAGTCGCAGCCTGGATTGCAGCGTCGTGGGCTCTATAACTGCGCAAATGTTTTTAGGGTTTCAAAT CTCTATTTTACTCTTATAAAGAGAGATGTCCTATTTATAATAAACGAACCCAAATGAAGATAGACTTAACCACTTAGAAA TAAATATAAAAGATAAACTCCTAATAGATAGACTCTTCAACTAAAAGATTAAAATAAATTGAATCAAGTTAACTAAATCC CTAATATTTAGAATCCTAACAAACCTGGAACCCTTCTCATGTTCTCACTCCAGGTTGCTATTTTTTTGCTCAGTCTTTTG CTTTGCTCCGTTTTTAATTCTCTGTTTAATACTGTCAGTTTTCTTAGCTCCCCATCTCCCCTTTTGATCATTTATATGTA TAGTTTAAATTATATATAATATAAAAAATTCACGTAGTGGCCATCCTGCTATACACTATACTGCTATTACGTTTTTTGGG CTGGCAGCTATGCTCCGCTAACCGGGATTGACAACACTCGTACTAACACTCATAGTTCCAATTATTCCAATAATTAGATT ATTGGCTAAATCGAAATTTTGTAACGTATTAGGGAATCCCCTTAGTAAGTCGTCCTGAGCCGACTTATCCGATTTTGAGA TTATTGCCCGATTTTGCGGATATGCAGAAATCTTTCTCATTATTATAGTAACTTCCTTTCCATATTGTGTTTATTATTAT TGCAAAGTTGCTGCTTTGTTTTTAACTTCGGTTTCCACAAATGATGAAATGACCTTTTTTTGGTCTGATTTTGTTCTTTT TAAGAAATATTTCTAAGTTATTGCATTGAAACCCAACCAAACATGTTTTCAGACCTGTTTTCTGTTTTCATTGAAATGAA AGTGGGAAATATACCAATAAAGCATGTTCTAGATTTTATGCTCAGTTCAAAGATCTCAAAAGAAACTCAATCATTTCTTT TACAAATCACTGACTTTCATTCTTAAGTTGTGAAAATTGGATGATGGAAAAGATTCTGATTTTTCTCAATGTTCCTAACA ACGCAATAGCGTTATAGCGGCTCCCACTATACACTGATTTTTTTATATAGTTGTTATAATTTATACTACGCACGTACATA TAAAAACATGAGTCTTCCTCTTTTGGGATAAAATGTTATAAATGAACACAAACAGAATACACTAGGTTGTTGGGATGAAT GAAAATAGATAGAGGCTGCTAGGAGCGTTATCGATGACGAATGGCGGTTTTCGAAAAACCCGTAATAGAGTATCGCCTTA TGCCATGGTTGGGCTATGACGGCTGAAGAAGGAGGAGGGAGGAGGTAGAAAGAGAAGGAGGAAGAAGGATGCTAGATGAC GCCGGCGAAGTCGTAAGCTTGCTAAAGCTCGTCAGAGGTATCATGTCGGCTGGTGACTAGGTCTCGTGGAGGTCGCATGT CAGGTTGAAGAAGGAAGATGATGGTATGAAACACAACCTCGTTTCATGAATGAAATGCGGGAAATATGAAACACATCCGT TTCATGCAACGTTTCATTTTAATGAAATGTGTGAAATATATGAAACACATCGTTTCATTAATTCACAAGAAAACCCCAAA AGGCCCTTCAAAGGTCTGACCTAATGCTTAAATATGGGGGCAATTTGGGGTTTTCACCTCGGTTTCCTAGGGTTTTCATC TCTCTTCCCTCTTGCGCTGCTACGGCGCCGCTATTCAACAGATCCAGGCTGTGTTATTCTGCCATAACTGCCATGCCAGA AACGCAATGCCATGGGATTCCTGTTGCTGTTTTTCTTAAACCTGAGAGTGAGATGGAAAAACGCCATGGTGCCGCCATGG CAGCAATTTGATTACATTGGCTAGGATACAACAGAACAAGATCAGAGACCAAGAGAAATAAGACTGACAGGAAAAAAAGA GAGAATAAAGCTGAGGAAGAAGTCTGGTCGCTGGAAGTTGTGGGCTCGCAGGAGTATAGGAAGGAGGGAGATGGAGGCTG GCAGAACCTAAACCCCAAAACGTGAATAATCAAAGACGCAGGAGGGTGTCCTAAAATATTTGAAGCAAAAAACTCTATCA TACCCTTTAAATGTCCTAATGGAATGTTTTTAAGGGCAAAACAGGGTTTCCGGTTCAGGAGCAGCATAGCACTACGAAGG ACGCGTTCTGGGCCGTAGTTGCAAATGTGAAAGCTGCTATATCAAAGCGCTCCGTGACTCAACTCAACTGCACGTTGTGG ACAGCCGCCACTCCGCTATACCGCGCGGTTCACATTTGGACTGTGACAGCATCTTCCATCAGTATGTTGGATGATACACA GTAGTTCATATCTTAAAGTGAGGCTGAATAATGGTGTCTTAGTAATTTTCTCGGTATTTGCAATGTGTATATTGGTATGT ATTGTATTAATAAATGACTTGAAGTCGACATATGTTTATATTTCTCAGCAAGAACATTTCTTGGCCTCATTATTGCATTT CTTAAATTTACTCAGAAGGTAGTTTTTGTCATCGCATTGACTGTTCCATGTTATCTATGTGCCCACTTTTTTCATGTCTG TTCCAACTTCCATCTATGTGCCCACTTTTTTCTTGTCGCTCAGATTGTAACGGTTTAATTCTATTTATGTCGGTGCTTAT TTCATAATTTTCTGACGTTCAAATGTAGGATGCACCGTAATAAGGGTCAATTTACTTCATCTAAGAAACAAGATGGAGCT AATGGTTCGGGTACTGACCAGGAGTCAGGGCAGGATGACAGTCAGGCAGAAACCTCGTGAGTTTTGTGTTTTGTATATCA TATTATCCTATTTTTGTATTTTGCGATATTGGGCCCGTTCGGCTCTGTTTATTTAGTTAATTAATCAGTTATTTTAAAAA AATATCACTGATGTATATTTTATGTGTTTTTAAAAAAATCATTTAAAAAAAAAGCAGAAAATTGATTATTTTCTTATGCT TTTTTGAATAGCTTCCGAAATAATCAATTATGAGAGCGAAATTCGATCCTATTTTCATGGTACACTACTTTGAATTCAAA TGTGCAATTTTATCCTTAAATAATTCTTTAAACTAATATGAAAATGATTTTTATATCTATTAATGTAATTTTATATGAAA AAGGCACTTTTTTGGTTTTATATCCAAACAGTTTAAAATCACTTTTAAAGTGAAAAGCACTTATTATACTTGTAAACAAA CATATATGAATTTCTGCTTTTCTAAAAATCACTTAAAATAAAATCAATTTTTTATTCAAATGTAAAATCACTTTTTTAAA GAAGAAACAAACAGGCCCTTGACTTATTGTGGGTTTTGGTGGATCCGTCTTTGACTTGTTATCTATTCTAGCTTAAGTTT AATTTGATGCAATTTTATATTTCACGTTATTATTTGGTACTTGCACTAAGAAGTTAACTTCATGGTGTGGCTATTTTCCT TAACTGGGATGTCTCTAACTAGATGTCTTACCATCTCTGTTTTTGATTGCGTGTTTATATAGATGCACACATTGTGGCAC TAGTTCAAAATCAACCCCAATGATGCGGCGAGGGCCATCTGGTCCAAGGTCACTTTGCAATGCTTGTGGCCTTTTTTGGG CAAATAGGGTAGGTATTTTGTCCAATTTTTTGTATTTTCGGAAAAATGTGTGTACGCATTTTTTAAATAATTATTCATTC ATGTAACATACATTTATGTGCATGCTCTTCCCTGTTCCTTCATTGCATTGGAATTTGGAAATATTTACTGCTGTATGAAT ATTTAGCTGGGAGTGTTTGTAAAAACCAATCAGTCTTTTTTGTATAGTGAAAAGTACAGCTTTTTTTAGCTCCTAAATGT CTTTCAGCTTTAATATCTGCAATAGTGTTTTCATATTATAGTTTTCTCTTATTTACAAATATCTAAGAGCTATGACTGTT TGGTTATTATAGATGTTTTGAATGTCCTGTGGCTACATTGTCCCGTAAGCTATACTGAATATGCTTGCTAATGTGATGCA TTATGCATATGATCATGAAGCTGTGGCCTGTGTCTTTGGGATCTGGATTCTTTCCCCCTTCCAGCTGCATTGTGGACTTG ATGATGGGAACATAATAGTAGGAGTTTTAATTGAAAGCAGAGAGAATCTATTGCTGTATTCTATGTGTTCTTTTCTGGCA CTATTTGAGAATATCAAAATCTTGGGAGTTTGATCTTGCTTTTGAACTTCTTACTATGAACTGTTTTCTTCTAAAAGTTT CCACAGCATAATTTAATTTTCTTTCCCTCTCATCTTCAAGGCGAATCATCTTTTATCTAGAATGAGGTGCTATTGTATTT TTTGTTGCATTAATTCAAACTTGCTTGACCGTGAATCTACAGTATCTTTTATGCTGATTGCTGAATTGTCAATAGTCTGA CCTTTTGACAATGGTATTCTACAGGGTGCTTTGAGAGACCTTTCTAAGAGAAATCAGGAACACTCTCTAGTACAAGTTGA GCAGGCATGCCTTCACTTACTATCTATCAATCAGTATTGTAAATTTGTAATATGTGCATTCTTTCACCTTTTTTTTTCTT TTTTTAATGTGATGACCAGGTTGATGGAGGTAATAGCGCAGACTGTAGAACTGCCATGCCTGCACTTAACAATGTTGTTG CTTTCTCTGAGAATGATGACCCAGCTTTGGTAGCTGATCGTTGAGTTTTCCAATCTTAGAAAATGCTAGAAATATATTAA TTCTATTCAGATTGACCAATAGAATGTACAGTTATAGCATAGCAATGCTCTCTCATCAAGCAAGAGATTTTTTTCTTTAT GCTTGGATGTTGATCTCTCTTTATGTATAACCTGGAATTGAAATTATAAATTGGTGATTTCGTACAGGGGCTTAATCTTA TCTAATATTTTGAATTTAAGTTTGGAAAA
CDS sequence (LotjaGi1g1v0136300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATTTCCCCTGTAATGGTTCTGAACCCCCTGGTTCAACCATGGAGCCACCAATGTATGGACACTCCCAGCCCATGAA CATGCCCGGCCAGATCGCCGCCGGAGATAGCGACGAAGCATCCGGCGCCGACCACGCCATCGACGCAAACCACCACATTC AGTACGAATCCAACCCGCTCGAAGATTGTAGCGGCGTCGCCGTCGAGGATGTTACCTCCGACGCCGTTTATGTTTCTGGC CACGCCGGTGGTGGCTCTGATTACTCTTCTCTCGTTCCTCACTGCGATGATTCTAGCCAGCTTACGCTGTCGTTTCGTGG CCAAGTTTATGTCTTCGATTCTGTTACGACTGATAAGGTTCAAGCGGTGTTGTTGCTGTTGGGTGGATGTGAACTACCTC AAGCGGGTACGCCATGTGTGGATACGGCGGCTCAACAAAATCAGAGGGGTTCAATGGAATATCCTGCCAGATGTAGTCTG CCACAGCGAGCAGCGTCATTAAATAGGTTCCGGCAGAAGAGGAAAGAGCGATGCTACGATAAGAAAGTTAGATATGGTGT ACGTCAAGAAGTTGCACTCAGGATGCACCGTAATAAGGGTCAATTTACTTCATCTAAGAAACAAGATGGAGCTAATGGTT CGGGTACTGACCAGGAGTCAGGGCAGGATGACAGTCAGGCAGAAACCTCATGCACACATTGTGGCACTAGTTCAAAATCA ACCCCAATGATGCGGCGAGGGCCATCTGGTCCAAGGTCACTTTGCAATGCTTGTGGCCTTTTTTGGGCAAATAGGGGTGC TTTGAGAGACCTTTCTAAGAGAAATCAGGAACACTCTCTAGTACAAGTTGAGCAGGTTGATGGAGGTAATAGCGCAGACT GTAGAACTGCCATGCCTGCACTTAACAATGTTGTTGCTTTCTCTGAGAATGATGACCCAGCTTTGGTAGCTGATCGTTGA
Protein sequence (LotjaGi1g1v0136300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNFPCNGSEPPGSTMEPPMYGHSQPMNMPGQIAAGDSDEASGADHAIDANHHIQYESNPLEDCSGVAVEDVTSDAVYVSG HAGGGSDYSSLVPHCDDSSQLTLSFRGQVYVFDSVTTDKVQAVLLLLGGCELPQAGTPCVDTAAQQNQRGSMEYPARCSL PQRAASLNRFRQKRKERCYDKKVRYGVRQEVALRMHRNKGQFTSSKKQDGANGSGTDQESGQDDSQAETSCTHCGTSSKS TPMMRRGPSGPRSLCNACGLFWANRGALRDLSKRNQEHSLVQVEQVDGGNSADCRTAMPALNNVVAFSENDDPALVADR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 43 | 43 | - | – | |
| PANTHER | 19 | 313 | 295 | 2.9E-141 | – | |
| PANTHER | 19 | 313 | 295 | 2.9E-141 | – | |
| ProSiteProfiles | 94 | 129 | 36 | 13.617 | ||
| SMART | 94 | 129 | 36 | 1.7E-9 | ||
| Pfam | 98 | 128 | 31 | 5.0E-12 | ||
| Pfam | 163 | 205 | 43 | 4.7E-15 | ||
| ProSiteProfiles | 163 | 205 | 43 | 12.104 | ||
| MobiDBLite | 194 | 249 | 56 | - | – | |
| MobiDBLite | 204 | 244 | 41 | - | – | |
| Gene3D | 221 | 281 | 61 | 1.3E-14 | ||
| ProSiteProfiles | 225 | 284 | 60 | 11.332 | ||
| SMART | 225 | 278 | 54 | 1.5E-15 | ||
| SUPERFAMILY | 227 | 279 | 53 | 1.9E-12 | – | |
| CDD | 230 | 276 | 47 | 2.48922E-15 | ||
| ProSitePatterns | 231 | 258 | 28 | - | ||
| Pfam | 231 | 266 | 36 | 6.0E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi1g1v0136300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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