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LotjaGi1g1v0137700.1

Overview

Field Value
Gene ID LotjaGi1g1v0137700
Transcript ID LotjaGi1g1v0137700.1
Lotus japonicus genome version Gifu v1.2
Description Basic helix-loop-helix transcription factor; TAIR: AT1G68810.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9S7Y1|BH030_ARATH Transcription factor bHLH30; TrEMBL-Plants: tr|A0A1J7GQ20|A0A1J7GQ20_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0137700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:22492192..22493893) extracted from Lotus japonicus Gifu genome v1.2.

CTCTCTTTGTAGACACAAAGAGTACAGAAACTGATTTATTCCCTGGTTTTCTCAGAGGTCCCCCTCGTTTACCCTTCCTA CAGTTCTACTTCCACCCCGGGCCACCCTCACTCTTCACACCCTCTCCCTATCCTATTTCTTTTCTTCTCAGTAGTGAAAA ACAAAATAAGAAACAGTTCCATTCTTCCCTGCCTCCCTACAAGCCTGTTCAATTTTCTTCCTACTAGTAAATCGTATACA TATATATATATATATATATATATATATATACACCTAGTTAATTACATTACATTTGCATTCTTCTTACCTTAGGAAGAAGA AGAACAAACATGCTTCCCTTAAGGGGATTCTACGGGTTCGAGAGCTGGCTAGATCACAAGCCTGCAAGACAAGGAAACAT TCAACAGAGCTCATTGATCAACTCAGCAGCTGAATTGGACGGTGGGAGATCAAGAAAATCAACGGAAGCATGCCAGAGTC ACAGGGATGCTGAGAGGAGACGCAGGCACCGAATCAACACCCACCTCTCCACTCTCCGTTCTCTCCTCCCTAACACCACC AAGGTCAAACAATTAAACCATAAAATATGTTAATTTCTCGAGGACAAAGTGGTAAATTCATAGCTTTTTTTTTTTGTTTT TTTCTGGTGCAGTCAGATAAGGCATCGTTACTGGCGGAAGTGGTTGAGCACGTGAAACGGTTGAGGAAGCAAGCAGATGA CGCGGCGGCGGTAACGGCGGCGGCGGTGACGTCCTCCTCTTCCTCCTCTGAATCAGTTATTTCTGCGGCGGAGGGTGAGC CGTGGCCGTTTCCGGGGGAGTCCGATGAGGCGACTGTGAAGTGCTGCGACGGGGAGGACGGAGAAGTGCTGAGGCGGGTG ACGGCAACGGTGTGCTGCGAGGACCGGCCCGGGCTGAACCGGGACCTGACGCAGGCAATCCGGTCGGTTCGGGCTAAGGC GGTTCGGGCGGAGATGATGACGGTTGGGGGGAGGAGCAAGAGTGTTGTGGTGATACAGTGGCCGCCGGAGGGGGAGGGAG AGGAGGTTGGAGCGTTGGAGCGGGCTTTGAAGGCTGTGATTGAGAATCGGGCTTTCGTGGGCTCTGAGATGGGCCGGGTT GTGTTGGGCCAGAAACGGGCTCGGGATAGTTATGAGGAGTTCTGCTAGGGCAGGCAATTAGGTTTTTTTTTTTTTTCTTT TCATTTCTTTCTTTTTCTTTGGGTGGTATAAAATGTAGAAGTTTAGTTAGGATTTAGGATCAGAAAAACATGGCAAAATG GAGGTTACCATCTTTTATATGTAGGTCAGGACATGAATTTTTTTTTAGTCTATACTAGCATGCTAATTATGTTCACTGTG TATGGCTATTGATATTTCTTCTACTAACTCAGAATTATCTAGGAAATTGGTGTATGATTTATTGTATGAATCAATTTAAG GTGAAATTAGATATTTAGGCTATGTTTGGCATGTCATTTCAGCTAGCTTATAGCTTATTTGACTAGCTTAAAGCTTATTT GACTAGCTTAAAAGCTCTATAAAAATGTTTGGTGAAGGAGCTTATTTCAGTAGCTTAAAGCTTAAAGCTTAAAGCTTATA GCTTATTAAATATATTCTCATTTTTATCCTTACTATTTTATCAAAATTTCACCTTTAGCCTTATATGTTTTCTACTAAAC CTATTTACCTACTCATTTTCCG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0137700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTTCCCTTAAGGGGATTCTACGGGTTCGAGAGCTGGCTAGATCACAAGCCTGCAAGACAAGGAAACATTCAACAGAG CTCATTGATCAACTCAGCAGCTGAATTGGACGGTGGGAGATCAAGAAAATCAACGGAAGCATGCCAGAGTCACAGGGATG CTGAGAGGAGACGCAGGCACCGAATCAACACCCACCTCTCCACTCTCCGTTCTCTCCTCCCTAACACCACCAAGTCAGAT AAGGCATCGTTACTGGCGGAAGTGGTTGAGCACGTGAAACGGTTGAGGAAGCAAGCAGATGACGCGGCGGCGGTAACGGC GGCGGCGGTGACGTCCTCCTCTTCCTCCTCTGAATCAGTTATTTCTGCGGCGGAGGGTGAGCCGTGGCCGTTTCCGGGGG AGTCCGATGAGGCGACTGTGAAGTGCTGCGACGGGGAGGACGGAGAAGTGCTGAGGCGGGTGACGGCAACGGTGTGCTGC GAGGACCGGCCCGGGCTGAACCGGGACCTGACGCAGGCAATCCGGTCGGTTCGGGCTAAGGCGGTTCGGGCGGAGATGAT GACGGTTGGGGGGAGGAGCAAGAGTGTTGTGGTGATACAGTGGCCGCCGGAGGGGGAGGGAGAGGAGGTTGGAGCGTTGG AGCGGGCTTTGAAGGCTGTGATTGAGAATCGGGCTTTCGTGGGCTCTGAGATGGGCCGGGTTGTGTTGGGCCAGAAACGG GCTCGGGATAGTTATGAGGAGTTCTGCTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0137700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLPLRGFYGFESWLDHKPARQGNIQQSSLINSAAELDGGRSRKSTEACQSHRDAERRRRHRINTHLSTLRSLLPNTTKSD KASLLAEVVEHVKRLRKQADDAAAVTAAAVTSSSSSSESVISAAEGEPWPFPGESDEATVKCCDGEDGEVLRRVTATVCC EDRPGLNRDLTQAIRSVRAKAVRAEMMTVGGRSKSVVVIQWPPEGEGEEVGALERALKAVIENRAFVGSEMGRVVLGQKR ARDSYEEFC
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
35 59 25 - –
PANTHER
PTHR45844
36 244 209 8.5E-79 –
PANTHER
PTHR45844:SF16
36 244 209 8.5E-79 –
MobiDBLite
mobidb-lite
39 53 15 - –
Gene3D
G3DSA:4.10.280.10
41 105 65 8.9E-15
IPR036638
CDD
cd00083
44 98 55 2.67422E-6
IPR011598
ProSiteProfiles
PS50888
46 95 50 15.885
IPR011598
Pfam
PF00010
48 95 48 1.3E-12
IPR011598
SUPERFAMILY
SSF47459
49 104 56 4.45E-14
IPR036638
SMART
SM00353
52 101 50 8.1E-13
IPR011598
MobiDBLite
mobidb-lite
114 133 20 - –
Gene3D
G3DSA:3.30.70.260
152 227 76 1.2E-5 –
SUPERFAMILY
SSF55021
154 222 69 7.21E-7 –
CDD
cd04873
157 221 65 5.17172E-4 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0137700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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