Transcript — View — Lotus Base

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LotjaGi1g1v0141100.1

Overview

Field	Value
Gene ID	LotjaGi1g1v0141100
Transcript ID	LotjaGi1g1v0141100.1
Lotus japonicus genome version	Gifu v1.2
Description	H+-transporting two-sector ATPase, alpha/beta subunit, central region, related; TAIR: AT1G10000.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp\|Q72IA8\|PTH_THET2 Peptidyl-tRNA hydrolase; TrEMBL-Plants: tr\|A0A151SPY7\|A0A151SPY7_CAJCA LINE-1 reverse transcriptase isogeny; Found in the gene: LotjaGi1g1v0141100
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:23150975..23152479) extracted from Lotus japonicus Gifu genome v1.2.

TTATTCACAGCTTTGAAAAACAAAGCTAAAAAGGAGACAAAACAAGCAAGGGGGTGATTAGTAGAAACAAAAAGCTAATC ACCCCTCCAACAAGTACGATCTCCAGACGAAAGCAAACTAAAAACTTTACAACATCCAAAGACCCTAAACCCAACCAAAA ATAAAAGAACAAAAGCTACATACCAGAAAGACTCAAAGACCAAAAGAAAGGATAAAGCACCCGACTCCGATCAGAAACAC CAAACTACCAATCACCACCCCTAAGGAGTATAAAAATGCTAGAGCGTTTGGCTGGCGTGTGTTCCTCAACCGCATCCAAA CCAAAGTTAACTTAATTCGAAGGAATATCCCCATACAAAATTCAGCTTGCACTTGGTGTGGAACTATGGAAGAAACCACT TCTCATCTACTGTTCCACTGTTCTTTCGCATGGAGGGTATGGTGCTTAATTTTGAATTGGCTGGGTATTTATATTGTACT CCCATGTGATCAAAAGGATCATTTTCTTCAATTTACTGGTAGCTGGTTATTGCCTAAGAGGAATGGTTTAGCAACTATAT GGCTGGCTGTCATTTGGCAGCTCTGGATTGCTAGAAATGGTTCTGTTTTCAGGGAGGAGGAAGCGGAGGTAGCAAGGTTA TTTGAGGAAGCTAAGGTTAAATCATGGTGCTGGCTCCGTGCAAGAAATAAAGCCTTCATCCATAGCATTTCTGAGTGGCA TAATCACCCTCTTGATTGCCTAAAAGATATGTGATGTGGAGATGCTTGGAAATTTTGTGACTCATTTAACTAATAGTTCT CTGTTTCTTGCTGTTTAATTGGTTAATTGGCAGGATTGAATTTGCTGGTACCTCTTTGTAATGCTGCTGCTTTGGCGTTG GATTTGATATTGAGCTTTGGATGATTTGGTGCTTTGGATTTATACTGCGTTTGGGTATATTACTAGTGGGCAGAGCTATT CTTTTCAACCAATTTTGAAGGTTCTTTGAAGGCCTAGTATCAGTTATTTATTGTTGCAGTGGTCAAACTGAATATGAAAC TATGGATAGTTTTAATTGACTTTGGTTGAGTTGGTATTTTTGGGTGGAAAGTGCTCTATTCCGGTTCACAAAAGCTAGCG GAGGAATTGGAATGCTTTGTTGGTACTTAAGCTCTGTTCTGAGGAAAGAGTGGGTTTGGGGTGGGAACTTAGAATGTTTT GTAAACTTCCTTGAAAATTTTCCCTTGTCTTTCTAAAGTTGGCACTCTTTTTCCTTATTAGGTTTTCCCAAGGGGGTTTT ATCCTAGTAAGGTTTTAATGAGGCCGGCTTTGTTAAGTCTATTTTCATTGAAGTATTAGGTGGGTAGGTCCGGTCTGGTT AGGTTTCATCAATGTTTTCGTCTCTATTATGTTCTTCTCTTCTTTTTTTTCTGTATTGGGTTGAAGTACCCCTTATACTT CTATTCAATATAATTTCTATTGCCTATCAAAAAAAAAACCCCCTAAGGAGGCCTACACGCTTGAA

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0141100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGAAACCACTTCTCATCTACTGTTCCACTGTTCTTTCGCATGGAGGGTATGGTGCTTAATTTTGAATTGGCTGGG TATTTATATTGTACTCCCATGTGATCAAAAGGATCATTTTCTTCAATTTACTGGTAGCTGGTTATTGCCTAAGAGGAATG GTTTAGCAACTATATGGCTGGCTGTCATTTGGCAGCTCTGGATTGCTAGAAATGGTTCTGTTTTCAGGGAGGAGGAAGCG GAGGTAGCAAGGTTATTTGAGGAAGCTAAGGTTAAATCATGGTGCTGGCTCCGTGCAAGAAATAAAGCCTTCATCCATAG CATTTCTGAGTGGCATAATCACCCTCTTGATTGCCTAAAAGATATGTGA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0141100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEETTSHLLFHCSFAWRVWCLILNWLGIYIVLPCDQKDHFLQFTGSWLLPKRNGLATIWLAVIWQLWIARNGSVFREEEA EVARLFEEAKVKSWCWLRARNKAFIHSISEWHNHPLDCLKDM

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR47746 View details on PTHR47746 Search for proteins/transripts with this domain View external data on PTHR47746	1	102	102	2.7E-16	–
Phobius	NON_CYTOPLASMIC_DOMAIN View details on NON_CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	1	13	13	-	–
PANTHER	PTHR47746:SF13 View details on PTHR47746:SF13 Search for proteins/transripts with this domain View external data on PTHR47746:SF13	1	102	102	2.7E-16	–
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	14	32	19	-	–
TMHMM	TMhelix View details on TMhelix Search for proteins/transripts with this domain	15	32	18	-	–
Phobius	CYTOPLASMIC_DOMAIN View details on CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	33	52	20	-	–
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	53	69	17	-	–
Phobius	NON_CYTOPLASMIC_DOMAIN View details on NON_CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	70	122	53	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0141100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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