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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0147400 |
| Transcript ID | LotjaGi1g1v0147400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ethylene-responsive transcription factor; TAIR: AT1G78080.1 related to AP2 4; Swiss-Prot: sp|Q8H1E4|RAP24_ARATH Ethylene-responsive transcription factor RAP2-4; TrEMBL-Plants: tr|B3IX30|B3IX30_LOTJA Transcription factor AP2-EREBP; Found in the gene: LotjaGi1g1v0147400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:25147697..25153246) extracted from Lotus japonicus Gifu genome v1.2.
GTGATTATGATCATAATCATGGTCCCTCAGCTACTATATAAAGGAGTGAGAGTTGTAAAGCAAAATCCAAGAGTGACCGT GAGATTCACCAAACAAAACTTTCATTCTTCTGAGAGAGAAAAAAAAAACAACGACTGTGTTTGCATCTTGTGTGTGGTTC TCCTTCTTCATTGTTTTCATCTAATCTTATTCCCCTTTCTGTTACTCCCCGCTTCTCTGAATCCCTTTCTGTTAATCATC TGTCTTTCAAGTTATATGATTTTTTGAGTTTTTAATCAAACTTACAAACTACTATTTCTTTGGAAGCCAGGTGTTTTCAG AATCGAGATCCAGGTTCAAAAAATTTGTTTTTCTTCATTTCATTTTTCATTTTTTCTCATCTTTCAATCAATCAGCTAAA AGGGTTGTTTTTGATCCCTTAAGGCTTTGATTTTTCTCAATATTTCTTGGATTAAAGGGGTTGTCTATTTAAAACCTCTT CTTCCATCTTTCATCTAGAAAACTTAAAAAAAAAAATATTGTTCCTTTTTTTTTAATTTTTCTCTGAAAATTTTCAGTAT TAGAAAGACAACACAGGTTGATTTTTATCTAAGATCTGTGTGTGCAGTTTACAGTTTTTTCATTACATGGCAGCTTCAAT GGATTTCTACAACAGTTCAACAACTCAACTTCAATCAGATCCCTTTAGTGGTGGTGAGTTGATGGAAGTTCTAGAGCCTT TCATGAAGACTAGTCCTTCCTCAACTCCCTCTCAATCTTCTTCATCCCCTTTCTCAAATTCATTCCTACCTTCTTCCAAC TCTACCTCTACCTCTTCTTACCCTTCTTCTCCTTCTCCTTCTCCTTCTCCTTATCCCTTCTACCAAAACCAACCCTCTTC TTCTTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCTTCACTACACAGCCCAATTTCTACACAGATGGTTGCTCTT CCATGATGCCATACCTATTTCCCTCAGGGTTTTCATCATCATCACAAAGCCAAAACAACTCCATAGGCTTTGAGCAAGAG CAACCAAGTTCTGTTATTGGGCTAAACCAGTTAACCCCATCTCAGATTAGCCAAATCCAAACCCAGATCCATTTCCAGTC CCAGCAGAACACCAGCAACTCTCTTAGCTTCCTCGCGCCGAAGCCGGTCGCAATGAAGCAATCTGGCACCCCTCCTAAGC CTACCAAGCTCTACAGAGGTGTGAGACAGAGGCATTGGGGGAAATGGGTAGCTGAGATTAGGCTTCCCAAGAATCGGACC AGGCTCTGGCTTGGGACATTTGAGACTGCTGAAGAAGCTGCTCTGGCTTATGACAGAGCAGCTTACAGGCTCAGAGGTGA TTTTGCAAGGCTGAATTTTCCAAACTTGAAGGATCAAGGTTCTTGTTTTGGAGATTACAAGCCTCTGCATGCTTCTGTTG ATGCTAAGCTTGATGCTATTTGTGAGAATTTGGCTGATTTGCAGAAACAGGGGACTAAAGCAGAGAAGGGTGTGAAGTCT TCTAAGAAAGGTTTGAAGAAACAGGTTCAGGCAGAGGTTGAGAACAAGGTGGAAGCTTCTTTGTCTCCAGTGGTGACTGA GAGTGAAAACTCTGATGATTCTTCTCCTTTGTCTGATCTTACATTTGGTGATTTCAGTGAGCCTCAGTGGGATGCTACTA CTTCAGAATATCTTAATCTGCAGAAGTTTCCATCTTATGAGATTGATTGGGATTCTCTGTGAAGTTGAAGTTGAAGTTGA ATTTGGTAGAGTCTTGTTATGTGACTAGTGTTAATGTAGGTGGTAGCTAGTGTCTCTTCTTATCTTGTGGCTGCTGCAAT TGAGTTTTTGAAAATTGCAGTGCTGCATGTAGGATTTATTTGGGTAATTGGGTTTATGGTTTAGGGTTATTTTTCTTTTT ATTATTGATTATTATTATTATGTCAATATATGATGTAAATCTCTGTCTACCTTGGTCAGCTGGTTTTTTTCTTGCTTGAC CATGGAGAATGACTCCGGTTTAGGTGTTCTTTGAAGTATATTATTATTGTTATTGATGTAATTCAATTCCAGTTGTATTT CAACTTAAGAATATAATGTACTACTACTAGTTTGTCTATGGTTATAGATTAATGGTGGTTGTCTCTTCTTGTTCTTATAC TAGCTATCAACTTTTGCTTAACTTAGTTTCTTAGTGTGTTTTTGGAAATTCAGAATGTGCATACAATTCAATTTTTACAA TGAAAGTTTAAGTACTTTGATAGGACCGAATGGAGGATGAAGCTTTCACGTTAAGTACCTTATACTATACTGTTTTTTCA CGTTTTGATAGCTTCAGAAACTGCAACAATGGTGATGAATCTGTGTATCTAAACACATTCTTTAGTGTGTTTTTGGGAAA CTTCCAAATCTCTATATTTTTCAATTCTAGTGCATTATTAAATGGGAAGCACATTGCACAAGCATTTGAAAAAACAAGAA AACGTGGGTTGACGTAGATTTTCGTGACTCTACGCGAAGTTAAGGGAAAGAGTGATTGTTAAGAGTGTAACTGCCTGATT GGGAAAGCTGTTAATTGAGGAGGTCTTTGTCTGCTTTGGTTACTTGCTTAAATTAACCTTGCTTGCATATTGGCAAAGTA AATTAGCTCTTTTTATAGATTGAGATGCGAATCGGTTCACATTTTAATCAATTGGTATCAAAACTCACCTATAGTCGTGT GAGAACAAACCACTATCACAAGGCTGGACTTATTATCATTGATGTGCATACCGGCCTTTTCAGGCTAGTTTTACCATTAA TGGATCAATTTGCGAGGTTTGGAGGAGCTAGGTCATAGGTTCAATGAATCCTAACTGAACTGTTGAAAGAAAAGTGTATC TGAATCAATTTTTGAGGAAGTTTACTAGCTAGTGCTTTCGGAATATTCATATTCCCACCAATTTTTTACTGTTTGTCAAT CATCTCCATTTTTGGAAGGAGCTAAACATGATGGTAATGGATCCTATGGTTATTTTTGTATTTTTCTTCTGCCTTCTTTT TTATGGATATTAAGTGTGAGTTTGTATCGTTTATTAGAATTAATTTTGATAAAATTGATTATAGTAAAAATGAGATGAAA GTGAAATGATATGAAATATTATTTTTATTAGATAATGTTGTGAAATTCGGTTGTAAAATCTTAGAATACATTATGTTCAA CGTAAAAATTATTATCAATTATTCAAAACGGGCACAATCTGGGATGAACTAGCTAAAATAGTGGTCCACGCTGCACCACC AAGTAAAAAATAAAAAAATCAAAATTAAATAACACTTAATTTACTATAATGTCTATTGTTTCTTTTTTTTAGTTACAGTC TGTTGTTTCTTCAACATCTACTTCCCAAACCTTAAATCTAAGCCCACCGTGTCACATACCAACCCTCGTCAGACCCACTG CGCCCACATTGTCAATGCTATAACCACCACCACCACTATGTATTTCACGATTTGATTTTCATCATGAGATCCGGAACTTC CTATGCATGAGGTCCAATATAAACCGAACTCTCATTCATCACCTAGAAACAAAGAAAGCTCATAAGAAGTTGAAACGCTT AATTTTGTGCATAAACCCAGATTGGGATGAGGAGCACATATATGAAATAGCAGACGAAGCGGCTCCAAATAACTGGTCGT CAGAAACCACCGCCTTTGTTGAGAACCACCATCACCTTCCACAACCTCTTTGAATCTACACCACCACCCTCAACCACATA TCAGAACCACCATTTGAACCACTAAGAATCCAATCCCAACAACCAGCAACTATCTTAACACTAAGCCTCGCAACCTTCCG TTGTTGAGGTCTTAGAAGCCCCATCGGGCAATCCATCATAATACTTGATCGCCCATTTCATTCACTCATTGCCAAAACCA ACCTGTAGCCATCACCGCAATAAAGACTATCCTATCTAACTTGTTTCCTGTGCAAAATTGGGAGGGTGGTTTTTTCTGCG CGCTTACCTCTAATGGCATATACACATCCAAGTTTGGGTATAATTTCATTCATGGTATCTGGTCCCAACCGGTGGCTTCT TCATCAACTGCTTCTGGATTGCCTCGTAAGCTATGGAATCACTATAGGAAGGCTTCCACTTTGCCTTGTTGCCAAGAAAC GGGCTGCAGGGCGATCTCGGGGGTTCTTCCAGTTCGCAAGGTCCTCTACAAGCGTGGGATTCCAACATACCCTCTTTGTC CGATATGTCTATCTAAGTTGGATTCTTTCTACTATGCCTTTTCCTTTGCCTTAGGGATGACAATGGGTCTCGGACCCATC AGATACCCGCAAAAAATACCCACTATGGGTAGGGTAAAAACCCGCTAGATGGGTATGAGGTCGGGTATGAGTAATTACCC GCAAAAAGTAGTGAGTATTGGTGCGGGTATGGGCACTATAGTACCCAACCCGTCCCATTCCCGTACACATATATTATTAT TATTATTTGGTAATATATTAAGTTATTAACAAATTAACGTAAGCTATAACTTTTAAAGTCTTTTTAAAAAAAGTGAGTAT TTAAGGTATTGCTAATTATTGCTAATTTACTCCAACTTATTTTTAAAATTAGTAAGTTAAAAAGCTACAACTTTAGGATT CTATTATACATTTAAAACTATAAATTTATAGATATTTATATCTTCTAGCTTATTCCTTCTAAAAAAATACTTATTTGAAT GATTTTACTTCTTAAGTATTAGGATAATCTTTTGTATTTTTTATTATTGTTTTTTATTTAAAAAGTTAGTTGTAAACAAA AAATAGTGAAAGAATATATTTTGGTTAGCTAAGTTGCGGGTAATGGGCTTGGGTACGGGCATGTAAGTACCCAAAGGGTA TGAGGACGAGCTTTCAAGTTGCTACCCATGCAGGTATGGGGACAGGTACGAGTAATTTTTGTAAACGCGGGTATGGGGAT GGGTACTATAGTACCCTACCCAGACCCTACCCATTGCCATCCCTACTTTGCCCTGAGGTCCAGCAGGTGTGGTTTGCGTC GCCCCTCGGTTTGCGTTGGGATCCTGGAGTTAACTTTCTTGATTTCTTGCTGTTATTTTTGGAGGAGGCATATATTGTTG TGGTTGGTCTGTTCTTTTCTATATCGTACTATGTTTGGGAATCTTGAAATACTAGTTTATTTCGTGGTGACCCTTTCGCC CTTGGGCGGGTTCTAACCCGAGTCCAATCGCTTCTGACCTCGGCGATGACGCAGACTCCGATGGTTGCCCCTATATCTTC CTTTCCCAACGTTTGTTCTCGCTCAGATGGTGACCTCATGAAGGTCAACTTTGACGCTTCACTCTCATCTTCTGGGGTTA CAGGTCTGGGTTATACTGCTTGTGACGGAGGTGGTTTGATGTTGGCTTCAGCAACCTCTTCTCCGATGGAGTCTATCTCC GGGGGTGGCGGTGGTTATGGGCATAAATGTCTCCAGTTGTTTGAGAGGTGGATGCGAGTCTTTAGAGAAGCATCCTACCT TGGAAAAACTTTTGCTTGCTTTGGTTTTAG
CDS sequence (LotjaGi1g1v0147400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGCTTCAATGGATTTCTACAACAGTTCAACAACTCAACTTCAATCAGATCCCTTTAGTGGTGGTGAGTTGATGGA AGTTCTAGAGCCTTTCATGAAGACTAGTCCTTCCTCAACTCCCTCTCAATCTTCTTCATCCCCTTTCTCAAATTCATTCC TACCTTCTTCCAACTCTACCTCTACCTCTTCTTACCCTTCTTCTCCTTCTCCTTCTCCTTCTCCTTATCCCTTCTACCAA AACCAACCCTCTTCTTCTTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCTTCACTACACAGCCCAATTTCTACAC AGATGGTTGCTCTTCCATGATGCCATACCTATTTCCCTCAGGGTTTTCATCATCATCACAAAGCCAAAACAACTCCATAG GCTTTGAGCAAGAGCAACCAAGTTCTGTTATTGGGCTAAACCAGTTAACCCCATCTCAGATTAGCCAAATCCAAACCCAG ATCCATTTCCAGTCCCAGCAGAACACCAGCAACTCTCTTAGCTTCCTCGCGCCGAAGCCGGTCGCAATGAAGCAATCTGG CACCCCTCCTAAGCCTACCAAGCTCTACAGAGGTGTGAGACAGAGGCATTGGGGGAAATGGGTAGCTGAGATTAGGCTTC CCAAGAATCGGACCAGGCTCTGGCTTGGGACATTTGAGACTGCTGAAGAAGCTGCTCTGGCTTATGACAGAGCAGCTTAC AGGCTCAGAGGTGATTTTGCAAGGCTGAATTTTCCAAACTTGAAGGATCAAGGTTCTTGTTTTGGAGATTACAAGCCTCT GCATGCTTCTGTTGATGCTAAGCTTGATGCTATTTGTGAGAATTTGGCTGATTTGCAGAAACAGGGGACTAAAGCAGAGA AGGGTGTGAAGTCTTCTAAGAAAGGTTTGAAGAAACAGGTTCAGGCAGAGGTTGAGAACAAGGTGGAAGCTTCTTTGTCT CCAGTGGTGACTGAGAGTGAAAACTCTGATGATTCTTCTCCTTTGTCTGATCTTACATTTGGTGATTTCAGTGAGCCTCA GTGGGATGCTACTACTTCAGAATATCTTAATCTGCAGAAGTTTCCATCTTATGAGATTGATTGGGATTCTCTGTGA
Protein sequence (LotjaGi1g1v0147400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAASMDFYNSSTTQLQSDPFSGGELMEVLEPFMKTSPSSTPSQSSSSPFSNSFLPSSNSTSTSSYPSSPSPSPSPYPFYQ NQPSSSFSSSSSSSSSSFFTTQPNFYTDGCSSMMPYLFPSGFSSSSQSQNNSIGFEQEQPSSVIGLNQLTPSQISQIQTQ IHFQSQQNTSNSLSFLAPKPVAMKQSGTPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEEAALAYDRAAY RLRGDFARLNFPNLKDQGSCFGDYKPLHASVDAKLDAICENLADLQKQGTKAEKGVKSSKKGLKKQVQAEVENKVEASLS PVVTESENSDDSSPLSDLTFGDFSEPQWDATTSEYLNLQKFPSYEIDWDSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 83 | 83 | - | – | |
| PANTHER | 1 | 74 | 74 | 1.1E-115 | – | |
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 1 | 74 | 74 | 1.1E-115 | – | |
| MobiDBLite | 33 | 67 | 35 | - | – | |
| PANTHER | 76 | 371 | 296 | 1.1E-115 | – | |
| PANTHER | 76 | 371 | 296 | 1.1E-115 | – | |
| CDD | 194 | 254 | 61 | 2.61341E-34 | ||
| Gene3D | 194 | 254 | 61 | 2.3E-30 | ||
| SUPERFAMILY | 195 | 252 | 58 | 9.15E-23 | ||
| SMART | 195 | 258 | 64 | 3.2E-37 | ||
| ProSiteProfiles | 195 | 252 | 58 | 23.011 | ||
| Pfam | 196 | 244 | 49 | 1.9E-13 | ||
| PRINTS | 196 | 207 | 12 | 4.9E-11 | ||
| PRINTS | 218 | 234 | 17 | 4.9E-11 | ||
| MobiDBLite | 289 | 341 | 53 | - | – | |
| MobiDBLite | 290 | 311 | 22 | - | – | |
| MobiDBLite | 319 | 341 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0147400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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