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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0149300 |
| Transcript ID | LotjaGi1g1v0149300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MADS-box transcription factor; TAIR: AT1G22130.1 AGAMOUS-like 104; Swiss-Prot: sp|Q9LM46|AG104_ARATH Agamous-like MADS-box protein AGL104; TrEMBL-Plants: tr|V7B6F0|V7B6F0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0149300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:25615647..25619079) extracted from Lotus japonicus Gifu genome v1.2.
CACATCATCAATCTCTCCGCCTCCCTCCCTTTTCTCCTCTCACCCATTCATAACCATTAATTCCCTTCCCTTTCTCTCCT ATCCAACAGCTCCTCCTTTAAAGCTTCATGCATCACTCTCCATTTATAATTTCCTGGTTTTTCCGATTGAAGAAAAAAAG AGAGAGGGCATTTTCGGTTTCCTCCTACCGATTCTCCATTATCCTTTGCATACATCCTTTGATAAAACAAAAAAAAATCA AGATGGGTCGTGTAAAGCTTGAGATAAAAAGAATAGACAACACCACAAATCGACAAGTTACATTCTCAAAGCGTAGAAAT GGCCTCATCAAGAAAGCTTATGAGCTATCCGTCTTGTGTGACATTGATATCGCCCTTATAATGTTTTCTCCATCAGGAAA AGTTAACCATTTTTCCGGTAGAAGGAGGTAATCATGTAAATGTATTTCTTTTAACTTGTTTCTTGAAGGTCTTGTTCATC ATGCTTTAGATGCAATGGCTAAAAATTATGTATGTGATAGTTTTTCATTATGACAATTAGATTTCTTATGTTCTTCACTC TTTTAGAGAAATGGGCATGCATAATCGTGCCCTATGGATTAGGATCTTGACTGAGTAGAATCTTGCTTTAAAATAATCGT GGCCTTCACAATTTGTAGCAAAGAAATCAATTATTATTTTTACTATGATCATGTTAACGAATGTTGCATTTGTTATTTTT TTGTTTAAATTTTGAGGATGATGAGATGCATTATATGATGAGCTATAATGATATTGCTGTTGTCGTGTTAATCAGGATCG AGGATGTTTTCACTCGTTACATTAATCTTCCTGATCAAGAAAGAGATAAGTATGTCCTGAACATGATTTGTGTAACTTCA TTTTTCTAAATTTCTTATCACATTTGGCTTTTTTAATTTCATGATTTATAGTAAAACTTTTCTTGCAGTGCTGTAAGTTT TCCTGAGTTACCTTACCGCAGGTATATATACTCTCAGTAATTCTATTCTCTTTGCCTTCGTTTACTCTTTCTTTGGTTCT TTTTATTTTCTTCTTCACAAGGAAACTAGTTTTTATTCTTTTACTATTTATTTACTTATTTACTCATTCTTTTATTTATT TATTTATTTATTTGCAGGGGTATTCAGAATAAGGAGGTATTTTCTCTAACTACATCTATATAAAAATTAAACCGTCGCAA GAAAGCATGGGAATTATTATTAACTTGAGAATTTACTATGATATTCCAATTAAAATTCCGAGTTGTTTCTGGAGTTCAAT TCTGACAAGTTTATAATTTTCTGGGGCATTTGCAGTACTTGCTTAGGACACTTCAGCAACTGAGAAGTGAAAATGATATA GCTCTCCAGCTAGCCAAGTTCGTAAATATATTAATTTAATCTTCGAATTTTGTTGGGATTATTTTTTTAAAAGTATTTTG GATGATCTAATATGGTATTAATTGTTTTGTTCCTTCTGTTTTTTTCTGCTTGAAACAAGTCCGGGAGACATTAACTCTGA GATTGAGGTAAGAAAACCACATTAAATTCCAAGTGAAAAAATTGAGTATAAGCTTTTTATCACTATTATTTGTTTCGTAC ACATTGAATGAGGTGTGTTTTAGCCTCACTCAAGTAGGATCCAATAGACCAATAAGGTCAAACACAGTTGGTAGATAGTT GAGAGCTTCTTAAGCATTTAGTCGAGGATTCGATCTCTGGGCGGTATGTATGGAGAATAATTTATTGGAAGAGACTTACC CACTTAATGTAATCTCAGAGTTTCGAAATGATTAATCTCATAGCGGCCGACTAGGATCTAATAGGATTTTGATTTGTGTA TTAGTGTAAAGTTTAAAAAGTCTTTGTCTACCGTATAATAAGAAAAATTTGGTTCACAAGTTAAAATAGTTCATCTACAA CTAAAGTTAACGAGTGGAACAATTTTTTACATAGTCCACGGTAGAATTGCTCGTATCATATAACTCTCCTTTGGAGATAG CTTCAAGTTTATTTATGGTATCCATTCTTGTGAGATTAGACTTTTTTTTGCCATTGTCATCTTTTTGTCAAATTTCTCAT GTGATCTTGAAATTTTCTTGATTAGGAACTCCATCAAGAAGTTAGTAGGTTGCAGCAACAACTTCAAATGGCTGACGAGC AGATAAGGTTCCTTCACAGCAAATATAGATGATCCTTGATTTTCTTAATATTGTTGTTCAATATATTTTTTTTTCCAATA ATGGTTTTAATTTTGGGAGTATGAACACAGGATATATGAACCTGACCCATTAAAGATGACATCCATGGGGGAGCTTGAAG CAAGCGAAAAACACCTACTAGATACATTGACACGTGTTATACAGAGAAAGGTTAGATAATAATCATAGTAGCACACATTT TTGTACAAATCAACATTTTCTCTCTTTGGTTTATGTGCTTTTATTATTTACAAATACTTGTTTACTTATGCTTGCAGGAT TATCTCTTGAGCAACCAACTATCTTCGTATGATCCATCTGGTATTCAGGTAACTAATTGAAAAGAGGTCTAACTTGATGA ATGCTTAGTATGAAAAGAGATCTAACTATATATAAATAATGAAGAGGTTAAGAGGTTAATGGATGCACTATCAACATCAC TGTAAAGAAGTTTTATACTGACATCTAATCACATTATATCACATGATACATGATTGCATAAATAAAAATGTTATATTGTA GGGGATGCCTACTTCTTTCGAGAATGTAAGTTGGTTGCAAGATGGTAGCCAGAACCATCCCCAGATGTTTGACGCTTCTG CCCCCTTGGATCCTCTCAGGTTTGATAATTTTATTTTCTAATCCACACGTATGATGTTTATGAAATGATTAATAATATCA ATAATGATGGTATGCTTATTAGGGATTTACCTTCCACCGTGTATGGTTCATTTTCACAAGGCACAAGCTCAAACGCTGAC CCGCGAGGCATGGGGGAGTGCCATGTGGCAAATCCGAGCGATGCAAACATTCCAGCATGGCCACAAGGATACACGTTGTA TCCACACATTCAGCATGACATGGTGGCACCCCATCCTGACATCCAAGACATGATGCCACATGGGCAGGTGAACATGCCAA TAACCGCCTCACACGTGGAGCCGCCGAAGAATGAAGCTGCTGAATATGATCAATGTAAACAACAGCAACAACAACCGCAT CATCACCAGCTTAATACTCAATGACACATATTGCTCAATGTGCTGTCGGAATGGAGAAGCCATGTCCAATTCTTAATTAT CATTTTTTGTTTCAAATGTGAAGTTAACCAGCGGCAAAAATTGCTATGTTAGCTGGGTATAATGTGTAAGATTACCTATA TGATGATAATGTGCATATATTAAACTATACCTGTGATGGTCCTTTGTGTTAAAAAAAAATAGAAAGATTAAAA
CDS sequence (LotjaGi1g1v0149300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATCACTCTCCATTTATAATTTCCTGGTTTTTCCGATTGAAGAAAAAAAGAGAGAGGGCATTTTCGGTTTCCTCCTA CCGATTCTCCATTATCCTTTGCATACATCCTTTGATAAAACAAAAAAAAATCAAGATGGGTCGTGTAAAGCTTGAGATAA AAAGAATAGACAACACCACAAATCGACAAGTTACATTCTCAAAGCGTAGAAATGGCCTCATCAAGAAAGCTTATGAGCTA TCCGTCTTGTGTGACATTGATATCGCCCTTATAATGTTTTCTCCATCAGGAAAAGTTAACCATTTTTCCGGTAGAAGGAG GATCGAGGATGTTTTCACTCGTTACATTAATCTTCCTGATCAAGAAAGAGATAATGCTGTAAGTTTTCCTGAGTTACCTT ACCGCAGGGGTATTCAGAATAAGGAGTACTTGCTTAGGACACTTCAGCAACTGAGAAGTGAAAATGATATAGCTCTCCAG CTAGCCAATCCGGGAGACATTAACTCTGAGATTGAGGAACTCCATCAAGAAGTTAGTAGGTTGCAGCAACAACTTCAAAT GGCTGACGAGCAGATAAGGATATATGAACCTGACCCATTAAAGATGACATCCATGGGGGAGCTTGAAGCAAGCGAAAAAC ACCTACTAGATACATTGACACGTGTTATACAGAGAAAGGATTATCTCTTGAGCAACCAACTATCTTCGTATGATCCATCT GGTATTCAGGGGATGCCTACTTCTTTCGAGAATGTAAGTTGGTTGCAAGATGGTAGCCAGAACCATCCCCAGATGTTTGA CGCTTCTGCCCCCTTGGATCCTCTCAGGGATTTACCTTCCACCGTGTATGGTTCATTTTCACAAGGCACAAGCTCAAACG CTGACCCGCGAGGCATGGGGGAGTGCCATGTGGCAAATCCGAGCGATGCAAACATTCCAGCATGGCCACAAGGATACACG TTGTATCCACACATTCAGCATGACATGGTGGCACCCCATCCTGACATCCAAGACATGATGCCACATGGGCAGGTGAACAT GCCAATAACCGCCTCACACGTGGAGCCGCCGAAGAATGAAGCTGCTGAATATGATCAATGTAAACAACAGCAACAACAAC CGCATCATCACCAGCTTAATACTCAATGA
Protein sequence (LotjaGi1g1v0149300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHHSPFIISWFFRLKKKRERAFSVSSYRFSIILCIHPLIKQKKIKMGRVKLEIKRIDNTTNRQVTFSKRRNGLIKKAYEL SVLCDIDIALIMFSPSGKVNHFSGRRRIEDVFTRYINLPDQERDNAVSFPELPYRRGIQNKEYLLRTLQQLRSENDIALQ LANPGDINSEIEELHQEVSRLQQQLQMADEQIRIYEPDPLKMTSMGELEASEKHLLDTLTRVIQRKDYLLSNQLSSYDPS GIQGMPTSFENVSWLQDGSQNHPQMFDASAPLDPLRDLPSTVYGSFSQGTSSNADPRGMGECHVANPSDANIPAWPQGYT LYPHIQHDMVAPHPDIQDMMPHGQVNMPITASHVEPPKNEAAEYDQCKQQQQQPHHHQLNTQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| Phobius | 21 | 39 | 19 | - | – | |
| Phobius | 40 | 382 | 343 | - | – | |
| SMART | 46 | 105 | 60 | 7.7E-39 | ||
| ProSiteProfiles | 46 | 106 | 61 | 29.59 | ||
| CDD | 47 | 120 | 74 | 1.72594E-35 | ||
| PANTHER | 47 | 243 | 197 | 3.7E-67 | – | |
| SUPERFAMILY | 47 | 124 | 78 | 2.75E-29 | ||
| PANTHER | 47 | 243 | 197 | 3.7E-67 | – | |
| ProSitePatterns | 48 | 102 | 55 | - | ||
| PRINTS | 48 | 68 | 21 | 1.2E-25 | ||
| Pfam | 55 | 102 | 48 | 6.1E-25 | ||
| Gene3D | 58 | 123 | 66 | 6.7E-26 | ||
| PRINTS | 68 | 83 | 16 | 1.2E-25 | ||
| PRINTS | 83 | 104 | 22 | 1.2E-25 | ||
| Coils | 171 | 191 | 21 | - | – | |
| MobiDBLite | 358 | 382 | 25 | - | – | |
| MobiDBLite | 364 | 382 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA polymerase II regulatory region sequence-specific DNA binding | Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Positive regulation of transcription by RNA polymerase II | Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi1g1v0149300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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