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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0149900 |
| Transcript ID | LotjaGi1g1v0149900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glycerol-3-phosphate acyltransferase; TAIR: AT1G02390.1 glycerol-3-phosphate acyltransferase 2; Swiss-Prot: sp|Q9FZ22|GPAT2_ARATH Probable glycerol-3-phosphate acyltransferase 2; TrEMBL-Plants: tr|K7M7H9|K7M7H9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0149900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:25755833..25758060) extracted from Lotus japonicus Gifu genome v1.2.
AAAATTGAAGTGTGTGTTAAATGTCAATACTGTTTGCATGTGTGTATAACTAATGTTTCAAAAAGATAAATGCTCAACCC ATCTCCTTAAAGAATTTCCAAGGCGCCTGAGACAACAAAGTTAAAATCCCCTTCCTCTTGTCACAAAATGAATTACTCTA GCTGCAGCAAGATGAAAAATGTTCCCCTTGGCCACAAAACATCACTACTTGCAAACAAGACACTAGTATTTGATTTTGAG GGTGTTCTCTTAAGATCCACTTCACTTTTCCCTTACTTCATGCTGGTTGCTTTTGAAGCTGGTGGTTTACTAAGATCCTT AATTTTGTTCCTTTCATACCCTTTGGTGTGGCTGGTGGGTGAGGATCAACTAGGCTTGAAAATCATGGTTTTCTTGTCCT TTTTTGGTATAAAAATGGACACATTCAGAATAGGATCAGCTGTTCTGCCAAAATTCTTCTTAGAAGATGTGGGATGGGAA GGCTTTGAAGCTGTGAGGTGTTGTGAGAGAAAAGTTGCATCAAGTAAGTTGCCAAGGATCATGGTTGAAGGTTTCTTGAA TGACTACATAGGGGTTGAGGCTGTTATAGCTAGAGACATAAAGTCCTTCAATGGGTACTTTCTGGGGTTGTTTGAGAATA AGAAAGCAAGTAAAAGCAAAACTCATTCACCTGAGGCTAAAGAGGGCAATGACATCAAGTACATTGACCAAGAAGTTTTC CCCTATTTCCAGGTTTGTACATTTTTAAGGTCACTCATACATCTCCATGCTTATAGTCAGGGTTTTAAATTACGGTCTGT AAGCAATTGCAGCTGTAACATAAAGGGTTTTGGAGTTTGCGCAACAGCATGGTAACTACAATTATAGCCGCATCAATCCA CCTGTATCCACAATTTCGTAACATGACTGCAACTGCAAAATCGCAATTTAAAACTCTGCTCTATCATGTTATTTTAAGAA TATATCTTTGTTTTTCATTAAATTAAGTTTCGCTTTCAATTTTTCTTTTTTGCCTCTGCAGAAATTTTGCTTAACTTTGA GCTCTGATGAGAGGAGAAATTGGCTTGTTCTTCCTAGAGAGAGGTACCCTAAGCCATTGATCTTCCATGATGGAAGATTA GCTTTCAGACCAACCCTTCCATCTTCTCTAGCTTTCTTCATGTGGTTACCCCTTGGACTCTTTCTTTCCATCTTCAGATT TATATTCGGTACTGCATTACCCTTCAATTTGTCAGCTCCAATATTAGCATTCTCAGGGACAAGAACCACTCTTTCAAGAG AGCATGAACATGGCTCTTTTTCTTTGACCCAAAAAGATGAAGAAAACCAAAAGGGCATGCTCTATGTGTGCAATCACAGA ACCTTACTTGACCCACTTTACATTGCATATGTTTTGGACAAACCTCTCTCTGCAGTCACATACAGCTTGAGCAGATTCAA TGAGCTAGTTGCCCCAATCAGAACCATAAGACTAACAAGAGACAGAGAGAAAGACAGAGAAACAATGGAGAAATTGCTGA GACAAGGTAACCTTGTGGTTTGTCCTGAGGGAACAACTTGCAGGGAACCTTATTTGTTAAGGTTTAGTCCCTTGTTTGCT GAACTCACAGATGATATTGTTCCTGTTGCTGTGGATGTGAAAGTTAGCATGTTCTATGGAACAACAGCTAGTGGCCATAA ATGTTTGGACCCTGTTTTTCACCTCATGAACCCAAATCCTAGTTACTTTGTTAAAATCCTCAAGAGATTACCACCATCAC AGACATGTAATGAAGGTGGGAGAACCAGGATTGAGGTTGCTAATTATGTGCAACATGAGATTGGGAATGCGTTGGGATTT GCCTGCACCAGTTTGACCAGGAAAGACAAGTACATGGTCTTGGCAGGTAACGAGGGTGTCAATCAGAAACATGGAGGTTC ATTCCATAGCTGCCAGTAGCTAGCTATAAAGCTTTACTTTCTGCTTCCCAGTTCCCCCTTTAGATGCATCTTCTTACTTT CGTTTGAAATAAAAGTGATTAATTGTATGTTTGGATTAACTTATTTTTCTTCCGAATCAGTGTGGAACATAAGAACTATG CTTTTCCTCAAAATTGATTTGGCTTTAGAATCAATTATTGAAGAATTTTTACATATATAATAATATTTCTATTTCTGTTA GTATGTAGCTTAATGAGTATCATAATCTCCTTTAGAGGGAAACTACAGTTGTATTCTTTGATATTTCT
CDS sequence (LotjaGi1g1v0149900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATTACTCTAGCTGCAGCAAGATGAAAAATGTTCCCCTTGGCCACAAAACATCACTACTTGCAAACAAGACACTAGT ATTTGATTTTGAGGGTGTTCTCTTAAGATCCACTTCACTTTTCCCTTACTTCATGCTGGTTGCTTTTGAAGCTGGTGGTT TACTAAGATCCTTAATTTTGTTCCTTTCATACCCTTTGGTGTGGCTGGTGGGTGAGGATCAACTAGGCTTGAAAATCATG GTTTTCTTGTCCTTTTTTGGTATAAAAATGGACACATTCAGAATAGGATCAGCTGTTCTGCCAAAATTCTTCTTAGAAGA TGTGGGATGGGAAGGCTTTGAAGCTGTGAGGTGTTGTGAGAGAAAAGTTGCATCAAGTAAGTTGCCAAGGATCATGGTTG AAGGTTTCTTGAATGACTACATAGGGGTTGAGGCTGTTATAGCTAGAGACATAAAGTCCTTCAATGGGTACTTTCTGGGG TTGTTTGAGAATAAGAAAGCAAGTAAAAGCAAAACTCATTCACCTGAGGCTAAAGAGGGCAATGACATCAAGTACATTGA CCAAGAAGTTTTCCCCTATTTCCAGAAATTTTGCTTAACTTTGAGCTCTGATGAGAGGAGAAATTGGCTTGTTCTTCCTA GAGAGAGGTACCCTAAGCCATTGATCTTCCATGATGGAAGATTAGCTTTCAGACCAACCCTTCCATCTTCTCTAGCTTTC TTCATGTGGTTACCCCTTGGACTCTTTCTTTCCATCTTCAGATTTATATTCGGTACTGCATTACCCTTCAATTTGTCAGC TCCAATATTAGCATTCTCAGGGACAAGAACCACTCTTTCAAGAGAGCATGAACATGGCTCTTTTTCTTTGACCCAAAAAG ATGAAGAAAACCAAAAGGGCATGCTCTATGTGTGCAATCACAGAACCTTACTTGACCCACTTTACATTGCATATGTTTTG GACAAACCTCTCTCTGCAGTCACATACAGCTTGAGCAGATTCAATGAGCTAGTTGCCCCAATCAGAACCATAAGACTAAC AAGAGACAGAGAGAAAGACAGAGAAACAATGGAGAAATTGCTGAGACAAGGTAACCTTGTGGTTTGTCCTGAGGGAACAA CTTGCAGGGAACCTTATTTGTTAAGGTTTAGTCCCTTGTTTGCTGAACTCACAGATGATATTGTTCCTGTTGCTGTGGAT GTGAAAGTTAGCATGTTCTATGGAACAACAGCTAGTGGCCATAAATGTTTGGACCCTGTTTTTCACCTCATGAACCCAAA TCCTAGTTACTTTGTTAAAATCCTCAAGAGATTACCACCATCACAGACATGTAATGAAGGTGGGAGAACCAGGATTGAGG TTGCTAATTATGTGCAACATGAGATTGGGAATGCGTTGGGATTTGCCTGCACCAGTTTGACCAGGAAAGACAAGTACATG GTCTTGGCAGGTAACGAGGGTGTCAATCAGAAACATGGAGGTTCATTCCATAGCTGCCAGTAG
Protein sequence (LotjaGi1g1v0149900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNYSSCSKMKNVPLGHKTSLLANKTLVFDFEGVLLRSTSLFPYFMLVAFEAGGLLRSLILFLSYPLVWLVGEDQLGLKIM VFLSFFGIKMDTFRIGSAVLPKFFLEDVGWEGFEAVRCCERKVASSKLPRIMVEGFLNDYIGVEAVIARDIKSFNGYFLG LFENKKASKSKTHSPEAKEGNDIKYIDQEVFPYFQKFCLTLSSDERRNWLVLPRERYPKPLIFHDGRLAFRPTLPSSLAF FMWLPLGLFLSIFRFIFGTALPFNLSAPILAFSGTRTTLSREHEHGSFSLTQKDEENQKGMLYVCNHRTLLDPLYIAYVL DKPLSAVTYSLSRFNELVAPIRTIRLTRDREKDRETMEKLLRQGNLVVCPEGTTCREPYLLRFSPLFAELTDDIVPVAVD VKVSMFYGTTASGHKCLDPVFHLMNPNPSYFVKILKRLPPSQTCNEGGRTRIEVANYVQHEIGNALGFACTSLTRKDKYM VLAGNEGVNQKHGGSFHSCQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 39 | 39 | - | – | |
| PANTHER | 16 | 489 | 474 | 1.8E-250 | – | |
| PANTHER | 16 | 489 | 474 | 1.8E-250 | – | |
| Phobius | 40 | 63 | 24 | - | – | |
| TMHMM | 40 | 62 | 23 | - | – | |
| Phobius | 64 | 74 | 11 | - | – | |
| TMHMM | 66 | 88 | 23 | - | – | |
| Phobius | 75 | 93 | 19 | - | – | |
| Phobius | 94 | 236 | 143 | - | – | |
| SUPERFAMILY | 234 | 491 | 258 | 1.7E-31 | – | |
| TMHMM | 236 | 258 | 23 | - | – | |
| Phobius | 237 | 257 | 21 | - | – | |
| Phobius | 258 | 500 | 243 | - | – | |
| CDD | 291 | 430 | 140 | 2.6153E-18 | – | |
| Pfam | 297 | 391 | 95 | 2.3E-8 | ||
| SMART | 301 | 402 | 102 | 1.4E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transferase activity, transferring acyl groups | Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). |
Expression pattern of LotjaGi1g1v0149900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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