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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0150300 |
| Transcript ID | LotjaGi1g1v0150300.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA-directed RNA polymerase II; TAIR: AT4G08540.1 DNA-directed RNA polymerase II protein; Swiss-Prot: sp|Q09315|5NT3_CAEEL Putative cytosolic 5'-nucleotidase 3; TrEMBL-Plants: tr|A0A0R0GEA1|A0A0R0GEA1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0150300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:25817626..25824107) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGAGAAAAACCAGCAACTGTGCCATATGCGAGAATTCAAATCAAGCTTCGATATGTTCTATTTGTGTCAACTATAG GTTTGTTTATCCATTAATCAATCAATCAATCAATCAATCAATCAATTGATTGATTTCTAGTTTAGGTTTTTGAAATATGT ACTTCAATTTTCGTAATTGTGCTCAGCTGATTCAATTGATTGATGGATTTCTTGTATTAATTTGGATGATGTCTTTGTCT TTGCAGGTTGAATGAGTATACCACCTCTTTGAAATCACTGAAAGAGCGTCGAGATTCGTTGTCCACGAAATTGAGCGAGG TTCTCGTCCGCAAGGTTCGAATCGAATCATGGCTTGACTTGATTTATGATACTGAGAAACACATGATCCTAACTTCCTAA GTTAATAGGATTTGAAAATGAAATTGAGCATCTTAAATTTTATCAACTGAGTACACCTACCTGTATTAATACATGCATGA ATTGCGACAAGATTTTTGAACTTTAGCATTCGGGTATATGCAAAATGGAAAAATGGTGAAGTAATTGAACCAAGAGATTT TTAGTTAACATTCTAACTTGAAATTTTTGGGTAAAACTTCATATAATACATGAAGCAAGCAACAGAAGCTTAGAATTCAA TGATAGGAAGTTTGAATAAAGAATTCCCAACTCCCAAGTGTACCTGGTATTTATTTCGACCTTACTATGGAAGTCTTATA GGAATAGCCCTAAATCCTAATATCGATGCCCATCTCCCAGCCAGTTTAGCTACTCTTGACATGCCTATGGAAAGTTCCTG ATGTGCTTGTTTGTGTTAGTAGTTCAGTACCTTTTTCTTTCCCTGTGATTCTTGGTACCGATTTTTCTATGCTGCTTTTG GACATTGTTGATTTCTATGTACTTTTGAAAATTCCTAGTTTATATGGCAAGGGTCAACTTTATATTTTTGTGAGGAACCA TGCAATATCATTTTAGTCAGTTCAAGTAACACTAGTGCATAATGTTGAAAAGGGAAAAGGAGATGATCAAACAAATTGGA GAGTGCTTCAACATGAAAAGCTCGCAAGGTTGAAGGAGAAGCTCCGTCACAGTAAAGAACAAGTTGCTCAAGGTTAGAAT ATTTCTCATGCCAAAGTGAATTTCTATATATTCAAATTTCACCCTGTGCCTATAGTAATGAATAAACATACAGGAAGAGC TAAGATAGGGACTATGTCTGCGGATCTGAAACTTAAATATGGAGTGCTTGAATCTGCCCTTTCTACGGTATTCTTTTTTT TTTCACCTTTCTTTGCTAATGGTATTGCTATGATCATGGCAACCATTGGTCAAGTTTAATGTGAATGCATATGAAGATGT TGAATGATTTATTTTACATTCTGCAGTTGGAAAAGAATCGAGTGGAACAACTGGAGAAGTTCTACCCTAATCTTATATGC ACACAGAGTTTAGGGCATGTGAGTGCTATTTGTTTATTTTATTTCCAACTGTTGTAAATTGTTCTGCGTAGTATTTTCTA ATACAGGCTTTTTCATCTAAAGCAGTATGGTACTTTGATATACAAATGAGTATTTAAAACTAATCTGCATTTCATTTATC AATACATTTGTTTTTCCTGGAACTTCAAAATTTATGCTCATATTTTTATTTTTCAGGTGGCGATTACCTCTGAGCGTCTT CATAAACAGTCTGTGGTCATAAAGCAGATATGCAAGTTATTTCCACAACGCCGGGTAAAGTAAATATATGACAGTCAATG TTCTGTTGGTTTATGTTTGTGGACATGTAACCTCCTTTTGAAATGCTCTGGAATATTGCGCTTAGTGCTGACTGTGGTCT CTACTGATAGAAATAATGGGTCTAGAGATATTTACTTTAATCATGAGCTTCTTGTATTCTTGCTTTCATTTTCTGTGCTC TTTTCTTGTTCATATTCTTATTTTTCAATTTCAATGATTTTCCTTCTTTTTTCCCAAATAGAACAACACAAATAACTAAA ACCTGTTCCCACAATCCCACTATCTTGGCAGGTTACATGAATCAAATGAGGCCATTATGTTTTGTCCCAAACCAATTTTT TAGTGATACCATTTAATTCTAGATCCGTTTTAATGGTTTCATTTAGAGTATTTCTTGATCTACTTCTACCTCTAGTTGTT ACAAAGCTATCCTCCCACTGTTAAACTCTTCTAAGTGTAGATTCTATTTGGTCTTCTCACACATTCAAACCATCTTAAGC ATTCATTAACAGAGAATGCTATGGATCATTACTCCTCTTATCGTGTTTGGTATGATGAGGAATCAGACTATTCATGATCC ATACTGACCTTTATATTATCTAGTTCTGTAAAAAGTTTTATACAATGAGAATAGTATCCATAATAAGTGGTGCTGATACT TTTGACCGTGGGGTTGTGGTGGCAACGGTGGGGAAAATGGTCTGGAGGATGGTGAAAAAGATCTTATGTAAGTCTTCCAC TGCTGATTGCTGGAAGCCAACCTAATCATTATGAGAACTTGGGTAATGATGGACCTGCAAAATTCAATTACCTGCTCATT GCAAGATCAAAATTTTGTTATTTAGAAATATCATAGAAAGGGGATTGCCTTTTGCATGAATAACAACTTGTTTGAGCTTT TGAGATTTGTTCCCTTTTCCAAATGTATTTGTGGAAGGACTTAATACTAATAGTGCTAGCATGCTGAAGAATGTTGTTTA AATAGAGATTTTACCTAGGATTGGGAGGATGGTGCGAAATCGCATAATGTGGAATCTTAAGTTCCTTCAAAAAATGAAAG GTTGGGTTTAGTTAGTAATCTGCACCAAGGTTATTAAACTCTAGTTTTAACTCTTAAACTCTTACGAGTTTACAATCCTA GGTAACCAAAACGAGTTAAATCGCAGTAAATTCTTTTTTTTATAAATTTGGTTGAACTCGGGTAAACTCGATAAACTCAG CTCGCGGGTTTACTTACGAGTTCACGAGTTTAGCAAAAAAAAAAGGAGAAAAATCATTTATTTATCAAAATGACAATATT TCATGACAAAGTCTTTGCAATACTACTTTTATTATTCACAAATCAATCCCGCTTTGTGTCTCTTTTCCTCTTTTTTCTAA CATTTCTTTGTTTGTTTATTGTGTATAACAGTATAAGAGTGTGCTACTACAATATTTCTAAAATTGTCAATTATTTTGCT ATTTAAGCACATATTTTTAATTTTATTGGTGTTTTCACCATTAGTGATTTTATAGATAATATTTTTGCATGAGGTAACTC GTAAGAGTTTACGAGTCGAGTTCACGAGTCGAGTTTACGAGCACTCCACGGGTTTACGAGTCGAGTTCACGAGTCGAGTT TACGGGCACTCCACGAGTTTACGTAAACTCTCGAGTTTGACAACCTTGATCTGCACTCAGCAGCATGCAAGGGCATGTGC AATTGGATTTCTCCTCTAATATTTGGGCTTGTCATCGGTCATGAAATCTGACTCGGAAACTTTTAAAAGTTAGATCGTGC GTGTCACATAGAGCTGGCATTCCAGGACTCGTATTGGGGAGTCTACTGTGATCTCACGAGGCCGTGATTTTTCTTGCGAG TATACAAGTTCTGTCAGCAAAAATCACATAATTGTGTTATCTTCATACGAGTTTAATTGCGATTTTGCAAACAATGGTTG AGATTAGTATTTTGACTGTGGAAAAGGAAGATGTAAAAAAATGTTGTGTGCTTAAATATATGAAAATAATGTCCTCTTTG GGTGAAACATGAAAGAGAAGAAAGTTTTTCCTTTATTGGTACATTTTTGGTCCAAAGTAATGTGTTGTCTCACAAGCATT AATCATCAGACCATAAGACTGAAGCAGTTTTTTTTATAAGCCAAAAGAATGCATTAAAAGGGAGAACAAGGGGTACTCCA ACCCTTAATACAAAGTGAGGAAAGAAAGAAAGGGACTGAAGTCAAACATGGTTTTATATTGTTATTTTATTGCACCCTTT TGTCAATTCAAGCATGCTTAGGTGCTCATGTCCTTCTGGTGTTAGGTGGTTATCGAGGGGGAAACAAAGGATGGTTGTAG CGGTCAATATGATCAAATTTGCAATGCACGCTTACCAAGAGCACTTGATTCCCATTCTGTTCCATCAGAAGAACTTTCTG CTTCTTTGGGGTATGGTTTTTTCCCTCTAAGATCTTATACACATACGTAATGCAGCTTTAGAAGTGAATCTCTGCAGTGT TATTAGAAAACAATGTTTTATGCTTAAAATTGTAACTACGATGTCCTATTTCAATTGCTTGCTCTTGTAGTCTAGAATCC TTATTGTTACTTATGTTAGACTTTGCTTGAATATTCTTCTTACATGCTACCCAATTTCTATTATGTGCAAAGCAGATACA TGGTGCAACTTCTAAATCTTGTTCTTCACAACTTGGCTGCCCCAGCACTTCATAACTCAGGTTTTGCGGTAAGCATTATG TTGTAATATTAGAAGATTTGTTTTATTATTAGGAGATTCGGTCTTTATTATGATTTGATTTCAAGTAGGAGATTAGTATC ACTCAAGTGAGATTCTGTACAGATTTATTATTTCCTTAATTAGGTTAGTCTAGCCTCTATAAATTGTAATTACCTGTTGT ATTTTTTCAATCAAGCAATAATATTATATTCTCTCCTTATTTCAAGTTATCAGTGTCCAAGCAGTGGATTGATGTTTCCT TAAGGTCATTTTTTTTATTGTATTCATTTCAAACAGTCTGGTCAAGCTTATTTATCTTACCCATTATCATTTTATTGCCA TTGAATGTTAGAATAGCATTACAATTCATGTGTTGAGTTTTGGTACAGTTTTAACTCCGCATTTTTGTTTGTAGGGTATT AAATTATTGTTTTGCTGATAATATTAGTGAATGATATGATATATAGGGTTCTATCCATGCAAAAGTATTCTCTTTTTTAA ATTTATAGAGCTTTTTCCAGATGCAGTGTCTATTTGTTGCAAGTTTCTGTACTGCTGTTGATGCTTATTAGTTATTACAT TTTTAAGACTAAACCTTCCTTAGTGTTGGCGTGGAGTTTGGTAAAAAAAGAATAGTTGTTCAGACTTTATCATGTTTTAA GATCTTATATTAAATGTACATAAGATCAGGTTTGATGTGCTGTGCTAATAATACATATCTTGCTGTTTTGATGCATGCAA AAATGTTACTTTAACTCATTTTAGAGTTTGGCATTTTATTTTGGTGGACCTGCCGATATGACCTTCAAGATGCTTTTTTG TCTTATTCTCCTGAAGGGAATTTTATGTTGTGAATATTTTTATGCCTCAGGGTTCTTGCTCTAGAATATGGCAACGGGAT TCTTATTGGGATGCACGTCCTTCCTCTAGGAGGTATTTTGGCCGAAATTGTATTTGGTAATGGTATAACTAATATGAAAG TTATGACTTCTTTAACCAAAATCCCTTTTTTTTTCAGTAATGAATATCCCCTTTTTATACCTCGCCAAAATTATTGCTCA ACTAGTGGGGAAAACTCTTGGTCGGATAAAAGCTCAAGCAACTTCGGTGTTGCATCAATGGAATCTGACAGGAGGCCTCG CCTGGATTCATCTTCGAGTAGTAGCTTTAATTATTCTTTAGCTTCTTCACATTCGGTTCAGACACACAAAGATCTGCAGA AAGGAATTTCACTTTTAAAGAAAAGTGTAGCATGTGTCACATCTTACTGTTATAACTCCCTATGCTTGGATGTCCCTTCT GAGGCATCTACGTTTGAAGCATTTGCGAAGTTATTGGCTACACTCTCATCATCCAAGGAAGTCCGATCTGTTTTTTCCTT GAAAATGGCTCGCTCTAGGTATTACCATGGAGATATTTGAAATTATAAAAGGGCAACTTAATGGTGATGTTCCAGGAGAT ACCTTTGATAATATTATATTTTGTTTAAGCTTATCAGCAGCTAATTTATTTCTGTTTCCCCTTATATATTTTTTCTTTTT AACTGTTGAAACCGGTTGTCACAATAACCATGTAACTTATGTCTCTGGAATTTTTAAAGTGTTGTATAGAGGAGCATATG CCAGAGCTCTAGATGTTTGAAAATTATTTTTTAAGGGCTTCGAACTTTAGAGTAAAGTGGTTTCTGTTTACTCTAGCATT TTGATTTACGTTATTGTGCCTGAGTTTTATTTTTTCCCTTTTGATTCAGGACATGTAAGCAAGTTCAGCAATTGAACAAA TCTGTATGGAATATGGATTCTACTATTTCATCAACTACTTTGCTGGAAAGTGCACATTCTGTGCCGCCAATGGTATAGCT TTTCACATAACTTCTAATTTGAAAGAAAATGCTGGTATTATTGGTTGATAGTTTTATGCTTTAGTGTTTTTGGTTCATCC TGTGCCAAGTAAAACTAGTAAGCAGCAAACTTTTGAATTTCTCAGCAGTGCTTGGAAATTCGTTTAAAAGTTCCAGGGTT AA
CDS sequence (LotjaGi1g1v0150300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAGAAAAACCAGCAACTGTGCCATATGCGAGAATTCAAATCAAGCTTCGATATGTTCTATTTGTGTCAACTATAG GTTGAATGAGTATACCACCTCTTTGAAATCACTGAAAGAGCGTCGAGATTCGTTGTCCACGAAATTGAGCGAGGTTCTCG TCCGCAAGGGAAAAGGAGATGATCAAACAAATTGGAGAGTGCTTCAACATGAAAAGCTCGCAAGGTTGAAGGAGAAGCTC CGTCACAGTAAAGAACAAGTTGCTCAAGGAAGAGCTAAGATAGGGACTATGTCTGCGGATCTGAAACTTAAATATGGAGT GCTTGAATCTGCCCTTTCTACGTTGGAAAAGAATCGAGTGGAACAACTGGAGAAGTTCTACCCTAATCTTATATGCACAC AGAGTTTAGGGCATGTGGCGATTACCTCTGAGCGTCTTCATAAACAGTCTGTGGTCATAAAGCAGATATGCAAGTTATTT CCACAACGCCGGGTGGTTATCGAGGGGGAAACAAAGGATGGTTGTAGCGGTCAATATGATCAAATTTGCAATGCACGCTT ACCAAGAGCACTTGATTCCCATTCTGTTCCATCAGAAGAACTTTCTGCTTCTTTGGGATACATGGTGCAACTTCTAAATC TTGTTCTTCACAACTTGGCTGCCCCAGCACTTCATAACTCAGGTTTTGCGGGTTCTTGCTCTAGAATATGGCAACGGGAT TCTTATTGGGATGCACGTCCTTCCTCTAGGAGTAATGAATATCCCCTTTTTATACCTCGCCAAAATTATTGCTCAACTAG TGGGGAAAACTCTTGGTCGGATAAAAGCTCAAGCAACTTCGGTGTTGCATCAATGGAATCTGACAGGAGGCCTCGCCTGG ATTCATCTTCGAGTAGTAGCTTTAATTATTCTTTAGCTTCTTCACATTCGGTTCAGACACACAAAGATCTGCAGAAAGGA ATTTCACTTTTAAAGAAAAGTGTAGCATGTGTCACATCTTACTGTTATAACTCCCTATGCTTGGATGTCCCTTCTGAGGC ATCTACGTTTGAAGCATTTGCGAAGTTATTGGCTACACTCTCATCATCCAAGGAAGTCCGATCTGTTTTTTCCTTGAAAA TGGCTCGCTCTAGGACATGTAAGCAAGTTCAGCAATTGAACAAATCTGTATGGAATATGGATTCTACTATTTCATCAACT ACTTTGCTGGAAAGTGCACATTCTGTGCCGCCAATGTTGATAGTTTTATGCTTTAGTGTTTTTGGTTCATCCTGTGCCAA GTAA
Protein sequence (LotjaGi1g1v0150300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARKTSNCAICENSNQASICSICVNYRLNEYTTSLKSLKERRDSLSTKLSEVLVRKGKGDDQTNWRVLQHEKLARLKEKL RHSKEQVAQGRAKIGTMSADLKLKYGVLESALSTLEKNRVEQLEKFYPNLICTQSLGHVAITSERLHKQSVVIKQICKLF PQRRVVIEGETKDGCSGQYDQICNARLPRALDSHSVPSEELSASLGYMVQLLNLVLHNLAAPALHNSGFAGSCSRIWQRD SYWDARPSSRSNEYPLFIPRQNYCSTSGENSWSDKSSSNFGVASMESDRRPRLDSSSSSSFNYSLASSHSVQTHKDLQKG ISLLKKSVACVTSYCYNSLCLDVPSEASTFEAFAKLLATLSSSKEVRSVFSLKMARSRTCKQVQQLNKSVWNMDSTISST TLLESAHSVPPMLIVLCFSVFGSSCAK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 410 | 410 | 1.9E-200 | – | |
| PANTHER | 1 | 410 | 410 | 1.9E-200 | – | |
| Pfam | 8 | 365 | 358 | 3.0E-64 | ||
| Coils | 28 | 55 | 28 | - | – | |
| Coils | 73 | 93 | 21 | - | – | |
| MobiDBLite | 268 | 297 | 30 | - | – | |
| MobiDBLite | 268 | 284 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0150300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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