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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0156000 |
Transcript ID | LotjaGi1g1v0156000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ethylene-responsive transcription factor; TAIR: AT1G21910.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9SFE4|ERF12_ARATH Ethylene-responsive transcription factor ERF012; TrEMBL-Plants: tr|A0A0L9UFU8|A0A0L9UFU8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0156000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:28119207..28120391) extracted from Lotus japonicus Gifu genome v1.2.
AGTCCCATCCTGCTTCATTCATCTCATCACATTCAAAACAGCTCCAAGAGAAACCAAAAAGTCACACACATTAAAACAGA GAGAGAGAGAGAGAGAGAGAAACACCTTCAACTTCAACACCCTTTTGTATCAACCAGTTTTAGTTCAAACATGGTGAAGG CAGAGATCAAGATCGACACAGAGCCATCAGCAAAGGCAAGGCAGGCTTTGTCTCCAACATCATCCTCATCATCATCAGCA ATGTCCAATGAGAAGAAGAAGAAGTACAAGGGAGTGAGAATGAGAACCTGGGGCTCATGGGTTTCAGAGATCAGAGCACC AAACCAGAAAACAAGGATATGGTTGGGTTCTTATTCAACTGCAGAAGCAGCAGCAAGAGCCTATGATGCTGCACTTCTCT GCCTCAAAGGGTCTTCTGCCACCAATCTGAACTTCCCTTCAAGTGCTTCACATTTCATTCCTCCTCAAGACACTGCCATG AATCCTAAATCAATTCAAAGATTTGCTGCTGCTGCTGCAAATAACAGTTTTGTGGACAATGGTTCACCTTCTCCTCCTCC TCAACCTCCTTCAAATTCTTCCTCATTGGTCTCATCCCCATCAATGTCATCATCTCCTTCAGATAAAATAGATGATGATG TCTCACTCTTTTCTTCCATTGGGGCCAACAACACTGGCTCTGAATATCAAGCAAATAATGAATCAATGGCTATGATTCAG TCTTGGTCTTGGTATGGCTTTGATGACATTCAATTCCCAAAACATGGGGATCAAATGCTGAGTGGGGATGTGTTTGACAT TGATGCAGCCCAGGCACTTGATGATTGGTACTATGAGGAAAGTGACATTCGTTTGTGGAGCTTCTCCTAAGTGAAATTGA AGTCACCCCCAAATTCTTTTTCTCACAAAATTCATATTTATTTGTCTTCAGTACTGACTGTGACCAAATTAAAACTATAT ACTCTAGAAGATATTGATAAAGAGATGAGACAATTTTTAGTTTCTTTGTTGATTTCTGCATATTTAAATGTATTATTGAT GCAAAGCTTGTTAATTATTTAGATATTATAAATAGTTTCGTTGGTTTATGTAATTTCATAAATGGAGGGACAAAAAACAT ATGGTCATGAAGATGTTAGTAATTACAACTTATAATCAATTCCTTTCATTGATTTTCTCTTGCGT
CDS sequence (LotjaGi1g1v0156000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGAAGGCAGAGATCAAGATCGACACAGAGCCATCAGCAAAGGCAAGGCAGGCTTTGTCTCCAACATCATCCTCATC ATCATCAGCAATGTCCAATGAGAAGAAGAAGAAGTACAAGGGAGTGAGAATGAGAACCTGGGGCTCATGGGTTTCAGAGA TCAGAGCACCAAACCAGAAAACAAGGATATGGTTGGGTTCTTATTCAACTGCAGAAGCAGCAGCAAGAGCCTATGATGCT GCACTTCTCTGCCTCAAAGGGTCTTCTGCCACCAATCTGAACTTCCCTTCAAGTGCTTCACATTTCATTCCTCCTCAAGA CACTGCCATGAATCCTAAATCAATTCAAAGATTTGCTGCTGCTGCTGCAAATAACAGTTTTGTGGACAATGGTTCACCTT CTCCTCCTCCTCAACCTCCTTCAAATTCTTCCTCATTGGTCTCATCCCCATCAATGTCATCATCTCCTTCAGATAAAATA GATGATGATGTCTCACTCTTTTCTTCCATTGGGGCCAACAACACTGGCTCTGAATATCAAGCAAATAATGAATCAATGGC TATGATTCAGTCTTGGTCTTGGTATGGCTTTGATGACATTCAATTCCCAAAACATGGGGATCAAATGCTGAGTGGGGATG TGTTTGACATTGATGCAGCCCAGGCACTTGATGATTGGTACTATGAGGAAAGTGACATTCGTTTGTGGAGCTTCTCCTAA
Protein sequence (LotjaGi1g1v0156000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVKAEIKIDTEPSAKARQALSPTSSSSSSAMSNEKKKKYKGVRMRTWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDA ALLCLKGSSATNLNFPSSASHFIPPQDTAMNPKSIQRFAAAAANNSFVDNGSPSPPPQPPSNSSSLVSSPSMSSSPSDKI DDDVSLFSSIGANNTGSEYQANNESMAMIQSWSWYGFDDIQFPKHGDQMLSGDVFDIDAAQALDDWYYEESDIRLWSFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 40 | 40 | - | – | |
PANTHER | 12 | 238 | 227 | 9.7E-84 | – | |
PANTHER | 12 | 238 | 227 | 9.7E-84 | – | |
MobiDBLite | 16 | 32 | 17 | - | – | |
Gene3D | 37 | 98 | 62 | 5.9E-27 | ||
CDD | 37 | 98 | 62 | 2.68687E-17 | ||
SMART | 38 | 102 | 65 | 3.0E-31 | ||
Pfam | 38 | 87 | 50 | 7.2E-11 | ||
ProSiteProfiles | 38 | 96 | 59 | 21.918 | ||
SUPERFAMILY | 38 | 97 | 60 | 2.42E-18 | ||
PRINTS | 39 | 50 | 12 | 6.4E-9 | ||
PRINTS | 61 | 77 | 17 | 6.4E-9 | ||
MobiDBLite | 126 | 159 | 34 | - | – | |
MobiDBLite | 144 | 159 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0156000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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