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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0156300 |
| Transcript ID | LotjaGi1g1v0156300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | carboxyl-terminal peptidase, putative (DUF239); TAIR: AT5G56530.1 tRNA-splicing ligase (DUF239); Swiss-Prot: sp|Q6ZR08|DYH12_HUMAN Dynein heavy chain 12, axonemal; TrEMBL-Plants: tr|K7M6Q5|K7M6Q5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0156300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:28185154..28187928) extracted from Lotus japonicus Gifu genome v1.2.
AAGTTATATGTGCAAATGACTAATATGTTGTTTTTTATCTTCTCCTTGTGTTTGGTGGCTAGCAATACAAGCCACAGAGT TGACGGAATGCGACATACACTAAAAAAAGATTTGGAGTTGGAGAGACAGTTAAAACTCATTAACAAGACTCCTATCAAGA TTATTCATGTATTTCATTTCTTTATGAAGGTTTTTTTTTAATTTTCTCTCACTATATGTTTAATATTGTTTTTCTTGGAA TTTGGTATCAACAGACAAAGTCTGGGCAGATTGTTGATTGCATTGATATAAGGAATCAACCAGCCTTTGACCATCCTTTG CTGCAGAATCATAAGTTGCAGGTACGCTTATTTTGAATAATAGAAACTATATATAGTTAATTCTTACTCATTTGTTCTAC GTTGATTGCATTTACCCATCTAATGTTCTTTTGTTAACGGTAGAGAAAACCAAGCTTTAAGAGCATAACGGGAAAAAATA TTGTCAATAGTTCTATTTCCAAACCGGTATTTGGCCTTGGGAAGAATCAATGTCCCACAGGAACTATTCCGATTCGAAGG ACTACAAAAGATGATCTCATTCGAGGTAAATCAGTAGTCAATTATCTTGACGTGAGACCAAGTTTTCTCGACATTCATGT AAGTATTGTACACCTTAACTTTGAATGTTTATTGGTTTATTTTAATTTTGGTGTATTTATGTGAACCTTTTAAAATTACA GCATGCGCAAGTAGTTCTTAAACAAATTCCTGGAAGCAGTTATTTTGGAGTTCGTGGAACTAATAGCATTTACAATCCAA GAGTTAACAAGAATCAATCAAGTTTGTCTCATATGTGGGTTCAAAATGGATCAGAAGATGATCTAAATGCAATTGTCGTT GGGTGGCAAGTAAGTTTTAATATTTCCTTCCTAAAATTTATATCTATATGCAGTGGCTCCCTGAAAAACCCCAAAAAGAA AAACTATACCTCAAAATTAATTGTATTTTCTTCTTTAAAATTTAAATTTATAATGAGGAACAAACAAACTCCATTATTTT TGTTTGTTCCTCTGAAGCTGTTTAGCATATTACAAGGCAGCAAATAAAATTTAGAATAAGTGAGTTGGACAAGTTCATGT CACTAGTGCAAATGTGTCATTCATCGACACGACCCTAAATATTTAGAATTTAAAATACATGTTTTTTAGCAGAGGGCCAT GTCTTCTCCTAGTCCCAAACGTTGTTTCACCTGGGTATATTTGACTTATTAATTAACGTCAACATAACTTATTAATTAAC GTCAATTTAATGATATAGAAAATAATATCTAATTTACCTTATACATTAATTTAATGGTATTAGGTGTCTCCAGATCTCTA CGGCGATGATCGAACTTATCTTTTCACATTCTGGACGTCGGTACGATATGTTCTTAGTAAAATAATTATTTAGACATTGG AGGTTAACTGAAAGATCATAATGTTTCATTACTTTGAAATTTGGCAGTCAGACAACTCGAAGAAGACTGGATGCTACAAT GTATTATGTCCGGGTTTTATTCAGATTGACAAAGAAGTCTTCATCGGAGGAGTTATTGACAAAACATCTGTCGACGGTGG ACCACAGTTTGAGATGACGGTTTCTCTATCACAGGTCTTGTAAACTCTATTAAATTTTTAGTATAAATGGGTTTAGATTA GTTTAATTTTTTAATTTTTTTTTTTTGCTTTTGAGTAAATATTCATCAAAATTAAACTACTTACTCTAAGGTCACCGAAT GATAGCTCAAGAGGTAAGAGCGGGGACATATGGGTTGGGAAAGGGAGATTCAGGAATCAATTCTTGGAGGGTGTAATTTA CCTTTCTAGTGTACCAAAAAAAACTACTTACTTTAAGGAAAATAAGAAAGACTATACACATCTTTTACAAGATTTATATT GATTCAAGTTCAAAATTATTCATTCTTAAATAACTGAAATGAAAACTATTTTATGAGATGTGTGAAGGTTGGTGATGATA AATTAATAAAATATTTTCTTAATGTTTTTCAGGACAACATAACAAAAAATTGGTGGGTGATTATCAACGATATAAACATT GGATATTTTCCAGCAGCTTTATTCTCCAACTTGAATTCAGCTTCTCTATTGGGATGGGGTGGAAGAACAACTACTCCACA TGGAACTCCTAGTCCTCCAATGGGATCAGGACAATTTCCTGATGATCACTTTTCTGATGGATGTTATTTTAAGCATATTT CATATCAGGATGAATCTAGTGAACATTACGAACCGGATGATTATTTGATACGTACATTCACAGACAAACCTAATTGCTTT GGCGCTAAATATTATGGACATTGGGAACAAGTTGAATATTCTCTCATATTTGGTGGACCTGGTGGTGAATGTGGAAATTG ATTAATGTCTTTCTCATGTTTTAATTCATTTTCAAAAATAAATAAAAATAACATTGATATCATTACTGAAAACAACTCTT TTCCTACGTTGATTCAAATGAATTTAAGTTTAGGGATTATTGTGTGGGTTGACTAAAAAACAATTCAACGACTCCTTAAA CAGGCGATTACTCAAGGAACATAATTTGTTCCTCAATGGAGGTTATGAAGATACTTCAAAAATCTCTTAGATATTACTAC TTGTGAATACCAAATTTTTGCCTGAGTTTTAATTAATTTAGTAGATATTTAGTAAAAATTCTAAAAAGTAGAAAATTGGA AAATGACATAAAAATTGTAAAGTTATGGAATAAAAAAATATAAAAATAGTTACAC
CDS sequence (LotjaGi1g1v0156300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTAATATTGTTTTTCTTGGAATTTGGTATCAACAGACAAAGTCTGGGCAGATTGTTGATTGCATTGATATAAGGAA TCAACCAGCCTTTGACCATCCTTTGCTGCAGAATCATAAGTTGCAGAGAAAACCAAGCTTTAAGAGCATAACGGGAAAAA ATATTGTCAATAGTTCTATTTCCAAACCGGTATTTGGCCTTGGGAAGAATCAATGTCCCACAGGAACTATTCCGATTCGA AGGACTACAAAAGATGATCTCATTCGAGGTAAATCAGTAGTCAATTATCTTGACGTGAGACCAAGTTTTCTCGACATTCA TCATGCGCAAGTAGTTCTTAAACAAATTCCTGGAAGCAGTTATTTTGGAGTTCGTGGAACTAATAGCATTTACAATCCAA GAGTTAACAAGAATCAATCAAGTTTGTCTCATATGTGGGTTCAAAATGGATCAGAAGATGATCTAAATGCAATTGTCGTT GGGTGGCAAGTGTCTCCAGATCTCTACGGCGATGATCGAACTTATCTTTTCACATTCTGGACGTCGTCAGACAACTCGAA GAAGACTGGATGCTACAATGTATTATGTCCGGGTTTTATTCAGATTGACAAAGAAGTCTTCATCGGAGGAGTTATTGACA AAACATCTGTCGACGGTGGACCACAGTTTGAGATGACGGTTTCTCTATCACAGGACAACATAACAAAAAATTGGTGGGTG ATTATCAACGATATAAACATTGGATATTTTCCAGCAGCTTTATTCTCCAACTTGAATTCAGCTTCTCTATTGGGATGGGG TGGAAGAACAACTACTCCACATGGAACTCCTAGTCCTCCAATGGGATCAGGACAATTTCCTGATGATCACTTTTCTGATG GATGTTATTTTAAGCATATTTCATATCAGGATGAATCTAGTGAACATTACGAACCGGATGATTATTTGATACGTACATTC ACAGACAAACCTAATTGCTTTGGCGCTAAATATTATGGACATTGGGAACAAGTTGAATATTCTCTCATATTTGGTGGACC TGGTGGTGAATGTGGAAATTGA
Protein sequence (LotjaGi1g1v0156300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFNIVFLGIWYQQTKSGQIVDCIDIRNQPAFDHPLLQNHKLQRKPSFKSITGKNIVNSSISKPVFGLGKNQCPTGTIPIR RTTKDDLIRGKSVVNYLDVRPSFLDIHHAQVVLKQIPGSSYFGVRGTNSIYNPRVNKNQSSLSHMWVQNGSEDDLNAIVV GWQVSPDLYGDDRTYLFTFWTSSDNSKKTGCYNVLCPGFIQIDKEVFIGGVIDKTSVDGGPQFEMTVSLSQDNITKNWWV IINDINIGYFPAALFSNLNSASLLGWGGRTTTPHGTPSPPMGSGQFPDDHFSDGCYFKHISYQDESSEHYEPDDYLIRTF TDKPNCFGAKYYGHWEQVEYSLIFGGPGGECGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 351 | 343 | 3.7E-141 | – | |
| PANTHER | 9 | 351 | 343 | 3.7E-141 | – | |
| Pfam | 13 | 96 | 84 | 1.5E-23 | ||
| Pfam | 129 | 347 | 219 | 1.9E-69 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0156300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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