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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR004314
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We have found 68 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.675s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0019769.1
n.a. Uncharacterized protein isoform 3 [Theobroma cacao] gi|508700842|gb|EOX92738.1| chr0 7855716 7856465 -
2 domain predictions
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Lj0g3v0082699.1
n.a. Carboxyl-terminal proteinase [Medicago truncatula] gi|357461895|ref|XP_003601229.1| chr0 32514341 32518429 -
2 domain predictions
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Lj0g3v0101369.1
n.a. Carboxyl-terminal proteinase [Medicago truncatula] gi|357492053|ref|XP_003616315.1| chr0 43006917 43008497 +
2 domain predictions
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Lj0g3v0173219.1
n.a. Carboxyl-terminal proteinase [Medicago truncatula] gi|357492053|ref|XP_003616315.1| chr0 83266407 83266712 -
2 domain predictions
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Lj0g3v0180119.1
n.a. Carboxyl-terminal proteinase [Medicago truncatula] gi|357506507|ref|XP_003623542.1| chr0 87579413 87580197 -
2 domain predictions
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Lj0g3v0180129.1
n.a. Uncharacterized protein TCM_017015 [Theobroma cacao] gi|508710686|gb|EOY02583.1| chr0 87582105 87582997 -
2 domain predictions
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Lj0g3v0262249.1
n.a. Carboxyl-terminal proteinase [Medicago truncatula] gi|357492053|ref|XP_003616315.1| chr0 135902335 135904721 -
2 domain predictions
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Lj0g3v0262249.2
n.a. Carboxyl-terminal proteinase [Medicago truncatula] gi|357492053|ref|XP_003616315.1| chr0 135902335 135904721 -
2 domain predictions
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Lj0g3v0266679.1
n.a. Carboxyl-terminal proteinase [Medicago truncatula] gi|357492053|ref|XP_003616315.1| chr0 138140968 138148373 +
2 domain predictions
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Lj1g3v5020830.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508718917|gb|EOY10814.1| chr1 61084393 61088814 -
2 domain predictions
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Lj1g3v5020830.2
n.a. Carboxyl-terminal peptidase [Medicago truncatula] gi|357441281|ref|XP_003590918.1| chr1 61084393 61088814 -
2 domain predictions
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Lj2g3v1415280.1
n.a. Carboxyl-terminal proteinase-like protein [Medicago truncatula] gi|357485777|ref|XP_003613176.1| chr2 22389468 22393782 +
2 domain predictions
 –
Lj2g3v1415280.2
n.a. Carboxyl-terminal proteinase-like protein [Medicago truncatula] gi|357485777|ref|XP_003613176.1| chr2 22389468 22393782 +
2 domain predictions
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Lj2g3v2558980.1
n.a. Carboxyl-terminal peptidase [Medicago truncatula] gi|357494785|ref|XP_003617681.1| chr2 35263843 35267391 +
2 domain predictions
 –
Lj4g3v1083830.1
n.a. Carboxyl-terminal proteinase-like protein [Medicago truncatula] gi|357485777|ref|XP_003613176.1| chr4 15591965 15597084 -
2 domain predictions
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Lj4g3v1561680.1
n.a. TPA: carboxyl-terminal proteinase [Zea mays] gi|414876130|tpg|DAA53261.1| chr4 23260901 23265156 -
2 domain predictions
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Lj4g3v2667380.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508784414|gb|EOY31670.1| chr4 36104980 36108581 +
2 domain predictions
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Lj5g3v0358760.1
n.a. Uncharacterized protein TCM_037250 [Theobroma cacao] gi|508782591|gb|EOY29847.1| chr5 3410327 3414326 -
2 domain predictions
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Lj5g3v1303500.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508718917|gb|EOY10814.1| chr5 20394381 20397463 +
2 domain predictions
 –
Lj5g3v1303500.2
n.a. Carboxyl-terminal peptidase [Medicago truncatula] gi|357441281|ref|XP_003590918.1| chr5 20394625 20397463 +
2 domain predictions
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Lj5g3v1303510.1
n.a. Uncharacterized protein isoform 2 [Theobroma cacao] gi|508718918|gb|EOY10815.1| chr5 20397498 20398042 +
2 domain predictions
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LotjaGi1g1v0091900.1
n.a. carboxyl-terminal peptidase, putative (DUF239); TAIR: AT2G20170.1 NEP-interacting protein, putative (DUF239); Swiss-Prot: sp|Q5JD26|THIC_THEKO Phosphomethylpyrimidine synthase; TrEMBL-Plants: tr|K7M6Q5|K7M6Q5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0091900 LjG1.1_chr1 13448746 13450889 -
2 domain predictions
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LotjaGi1g1v0093700.1
n.a. carboxyl-terminal peptidase (DUF239); TAIR: AT2G20170.1 NEP-interacting protein, putative (DUF239); Swiss-Prot: sp|A1WHB4|KUP_VEREI Probable potassium transport system protein kup; TrEMBL-Plants: tr|V7B7T8|V7B7T8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0093700 LjG1.1_chr1 13816155 13818319 +
2 domain predictions
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LotjaGi1g1v0093800.1
n.a. carboxyl-terminal peptidase (DUF239); TAIR: AT2G20170.1 NEP-interacting protein, putative (DUF239); Swiss-Prot: sp|A1WHB4|KUP_VEREI Probable potassium transport system protein kup; TrEMBL-Plants: tr|V7B7T8|V7B7T8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0093800 LjG1.1_chr1 13857982 13860114 +
2 domain predictions
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LotjaGi1g1v0135700.1
n.a. carboxyl-terminal peptidase, putative (DUF239); TAIR: AT2G20170.1 NEP-interacting protein, putative (DUF239); Swiss-Prot: sp|Q8N7C3|TRIMM_HUMAN Probable E3 ubiquitin-protein ligase TRIML2; TrEMBL-Plants: tr|K7M6Q5|K7M6Q5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0135700 LjG1.1_chr1 21999751 22001651 +
2 domain predictions
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LotjaGi1g1v0156300.1
n.a. carboxyl-terminal peptidase, putative (DUF239); TAIR: AT5G56530.1 tRNA-splicing ligase (DUF239); Swiss-Prot: sp|Q6ZR08|DYH12_HUMAN Dynein heavy chain 12, axonemal; TrEMBL-Plants: tr|K7M6Q5|K7M6Q5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0156300 LjG1.1_chr1 28185154 28187928 +
2 domain predictions
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LotjaGi1g1v0156300.2
n.a. carboxyl-terminal peptidase, putative (DUF239); TAIR: AT5G56530.1 tRNA-splicing ligase (DUF239); Swiss-Prot: sp|P77804|YDGA_ECOLI Protein YdgA; TrEMBL-Plants: tr|A0A151U1A7|A0A151U1A7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0156300 LjG1.1_chr1 28185154 28187928 +
2 domain predictions
 –
LotjaGi1g1v0156600.1
n.a. carboxyl-terminal peptidase, putative (DUF239); TAIR: AT4G23360.1 carboxyl-terminal peptidase; Swiss-Prot: sp|P77804|YDGA_ECOLI Protein YdgA; TrEMBL-Plants: tr|A0A151U165|A0A151U165_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0156600 LjG1.1_chr1 28571210 28573671 +
2 domain predictions
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LotjaGi1g1v0289500.1
n.a. carboxyl-terminal peptidase, putative (DUF239); TAIR: AT2G20170.1 NEP-interacting protein, putative (DUF239); Swiss-Prot: sp|Q6ESI7|TPPII_ORYSJ Tripeptidyl-peptidase 2; TrEMBL-Plants: tr|K7M6Q5|K7M6Q5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0289500 LjG1.1_chr1 70244524 70246962 +
2 domain predictions
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LotjaGi1g1v0363900.1
n.a. carboxyl-terminal peptidase (DUF239); TAIR: AT5G25950.1 AslB, putative (DUF239); Swiss-Prot: sp|Q6FUA5|YSH1_CANGA Endoribonuclease YSH1; TrEMBL-Plants: tr|I3SZ69|I3SZ69_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0363900 LjG1.1_chr1 83944899 83948790 +
2 domain predictions
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LotjaGi1g1v0364600.1
n.a. carboxyl-terminal peptidase (DUF239); TAIR: AT5G25950.1 AslB, putative (DUF239); TrEMBL-Plants: tr|I3SZ69|I3SZ69_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0364600 LjG1.1_chr1 84162922 84167398 -
2 domain predictions
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LotjaGi1g1v0365500.1
n.a. carboxyl-terminal peptidase (DUF239); TAIR: AT5G25950.1 AslB, putative (DUF239); Swiss-Prot: sp|B7GIR9|NADA_ANOFW Quinolinate synthase A; TrEMBL-Plants: tr|A0A151TTK9|A0A151TTK9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0365500 LjG1.1_chr1 84301712 84306195 -
2 domain predictions
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LotjaGi1g1v0365600.1
n.a. carboxyl-terminal peptidase (DUF239); TAIR: AT5G25950.1 AslB, putative (DUF239); Swiss-Prot: sp|Q6FUA5|YSH1_CANGA Endoribonuclease YSH1; TrEMBL-Plants: tr|I3SZ69|I3SZ69_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0365600 LjG1.1_chr1 84344336 84347938 -
2 domain predictions
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LotjaGi1g1v0394900_LC.1
n.a. carboxyl-terminal peptidase (DUF239); TAIR: AT2G38255.1 hypothetical protein (DUF239); Swiss-Prot: sp|Q8D3H2|EFG_WIGBR Elongation factor G; TrEMBL-Plants: tr|I3SWN5|I3SWN5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0394900_LC LjG1.1_chr1 87982537 87986122 -
2 domain predictions
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LotjaGi1g1v0786700.1
n.a. carboxyl-terminal peptidase (DUF239); TAIR: AT5G18460.1 carboxyl-terminal peptidase (DUF239); Swiss-Prot: sp|Q5JPF3|AN36C_HUMAN Ankyrin repeat domain-containing protein 36C; TrEMBL-Plants: tr|A0A151TXQ0|A0A151TXQ0_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0786700 LjG1.1_chr1 135892413 135898840 -
2 domain predictions
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LotjaGi1g1v0786700.2
n.a. carboxyl-terminal peptidase (DUF239); TAIR: AT5G18460.1 carboxyl-terminal peptidase (DUF239); Swiss-Prot: sp|Q96GX5|GWL_HUMAN Serine/threonine-protein kinase greatwall; TrEMBL-Plants: tr|I1NCE9|I1NCE9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0786700 LjG1.1_chr1 135892534 135896959 -
2 domain predictions
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LotjaGi2g1v0134800.1
n.a. carboxyl-terminal peptidase (DUF239); TAIR: AT2G35250.1 NEP-interacting protein, putative (DUF239); TrEMBL-Plants: tr|I3SWN5|I3SWN5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0134800 LjG1.1_chr2 48985505 48989253 +
2 domain predictions
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LotjaGi2g1v0216200.1
n.a. carboxyl-terminal peptidase (DUF239); TAIR: AT2G35250.1 NEP-interacting protein, putative (DUF239); Swiss-Prot: sp|Q01386|KAPR_NEUCR cAMP-dependent protein kinase regulatory subunit; TrEMBL-Plants: tr|I3SWN5|I3SWN5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0216200 LjG1.1_chr2 66915929 66919389 +
2 domain predictions
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LotjaGi2g1v0216600_LC.1
n.a. carboxyl-terminal peptidase (DUF239); TAIR: AT2G38255.1 hypothetical protein (DUF239); Swiss-Prot: sp|Q01386|KAPR_NEUCR cAMP-dependent protein kinase regulatory subunit; TrEMBL-Plants: tr|I3SWN5|I3SWN5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0216600_LC LjG1.1_chr2 67010845 67015346 +
2 domain predictions
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LotjaGi2g1v0323400.1
n.a. carboxyl-terminal peptidase, putative (DUF239); TAIR: AT1G23340.1 carboxyl-terminal proteinase, putative (DUF239); Swiss-Prot: sp|Q28013|RASA3_BOVIN Ras GTPase-activating protein 3; TrEMBL-Plants: tr|A0A0L9US72|A0A0L9US72_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0323400 LjG1.1_chr2 79852750 79857288 +
2 domain predictions
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LotjaGi2g1v0323400.2
n.a. carboxyl-terminal peptidase, putative (DUF239); TAIR: AT1G23340.3 carboxyl-terminal proteinase, putative (DUF239); Swiss-Prot: sp|Q28013|RASA3_BOVIN Ras GTPase-activating protein 3; TrEMBL-Plants: tr|A0A0L9US72|A0A0L9US72_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0323400 LjG1.1_chr2 79852842 79856609 +
2 domain predictions
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LotjaGi3g1v0129600.1
n.a. carboxyl-terminal peptidase, putative (DUF239); TAIR: AT1G55360.1 tRNA-splicing ligase (DUF239); Swiss-Prot: sp|A2QAS2|MNS1B_ASPNC Probable mannosyl-oligosaccharide alpha-1,2-mannosidase 1B; TrEMBL-Plants: tr|A0A0L9UIR2|A0A0L9UIR2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0129600 LjG1.1_chr3 15936269 15941284 -
2 domain predictions
 –
LotjaGi3g1v0129600.2
n.a. carboxyl-terminal peptidase, putative (DUF239); TAIR: AT1G55360.1 tRNA-splicing ligase (DUF239); Swiss-Prot: sp|A2QAS2|MNS1B_ASPNC Probable mannosyl-oligosaccharide alpha-1,2-mannosidase 1B; TrEMBL-Plants: tr|A0A0L9UIR2|A0A0L9UIR2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0129600 LjG1.1_chr3 15936998 15939922 -
2 domain predictions
 –
LotjaGi3g1v0129600.3
n.a. carboxyl-terminal peptidase, putative (DUF239); TAIR: AT1G55360.1 tRNA-splicing ligase (DUF239); Swiss-Prot: sp|A2QAS2|MNS1B_ASPNC Probable mannosyl-oligosaccharide alpha-1,2-mannosidase 1B; TrEMBL-Plants: tr|A0A0L9UIR2|A0A0L9UIR2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0129600 LjG1.1_chr3 15936998 15939961 -
2 domain predictions
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LotjaGi3g1v0129600.4
n.a. carboxyl-terminal peptidase, putative (DUF239); TAIR: AT1G55360.1 tRNA-splicing ligase (DUF239); Swiss-Prot: sp|A2QAS2|MNS1B_ASPNC Probable mannosyl-oligosaccharide alpha-1,2-mannosidase 1B; TrEMBL-Plants: tr|A0A0L9UIR2|A0A0L9UIR2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0129600 LjG1.1_chr3 15936998 15940597 -
2 domain predictions
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LotjaGi3g1v0314700.1
n.a. carboxyl-terminal peptidase (DUF239); TAIR: AT2G44220.1 NEP-interacting protein (DUF239); Swiss-Prot: sp|P0A053|TNPB_STAAM Transposase B from transposon Tn554; TrEMBL-Plants: tr|G7LHN5|G7LHN5_MEDTR DUF239 domain protein; Found in the gene: LotjaGi3g1v0314700 LjG1.1_chr3 66536172 66553104 +
2 domain predictions
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LotjaGi3g1v0314800.1
n.a. carboxyl-terminal peptidase, putative (DUF239); TAIR: AT2G20170.1 NEP-interacting protein, putative (DUF239); Swiss-Prot: sp|P30921|CDGT_BAC11 Cyclomaltodextrin glucanotransferase; TrEMBL-Plants: tr|G7LHN5|G7LHN5_MEDTR DUF239 domain protein; Found in the gene: LotjaGi3g1v0314800 LjG1.1_chr3 66702229 66708423 +
2 domain predictions
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LotjaGi3g1v0314800.2
n.a. carboxyl-terminal peptidase, putative (DUF239); TAIR: AT2G20170.3 NEP-interacting protein, putative (DUF239); Swiss-Prot: sp|P30921|CDGT_BAC11 Cyclomaltodextrin glucanotransferase; TrEMBL-Plants: tr|A0A1J7H5K9|A0A1J7H5K9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0314800 LjG1.1_chr3 66702372 66708423 +
2 domain predictions
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LotjaGi3g1v0456600.1
n.a. carboxyl-terminal peptidase (DUF239); TAIR: AT2G35250.1 NEP-interacting protein, putative (DUF239); Swiss-Prot: sp|Q4LAK0|PURA_STAHJ Adenylosuccinate synthetase; TrEMBL-Plants: tr|I3SWN5|I3SWN5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0456600 LjG1.1_chr3 87006484 87008852 -
2 domain predictions
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LotjaGi3g1v0457000.1
n.a. carboxyl-terminal peptidase (DUF239); TAIR: AT2G35250.1 NEP-interacting protein, putative (DUF239); Swiss-Prot: sp|B8EBJ1|RS8_SHEB2 30S ribosomal protein S8; TrEMBL-Plants: tr|I3SWN5|I3SWN5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0457000 LjG1.1_chr3 87059528 87061858 -
2 domain predictions
 –