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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0156700 |
| Transcript ID | LotjaGi1g1v0156700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ECA1 gametogenesis family protein (DUF784); TAIR: AT4G13263.1 ECA1 gametogenesis family protein (DUF784); Swiss-Prot: sp|Q1LP76|SYFA_CUPMC Phenylalanine--tRNA ligase alpha subunit; TrEMBL-Plants: tr|K7MX26|K7MX26_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0156700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:28916219..28916650) extracted from Lotus japonicus Gifu genome v1.2.
AATAACCTAATAAAAATGGCCATGAAATCATTCAATAGCTTGTTTGCAGTCATGGCAATTTTGTCTAGTTTAACTTTACT CATTAAAAGATCCCACAGTTCTCCAGTTGAGGTTAATTATGCCCCAAGACCTTTGTTAGCGTATGGAAAATATTTGAGTA ACTGTGCAAGCAAGTTAAAATCAATTTGTGGCCAAGAAATATTTTTAGGAGTATTTGTTGGCAGTCACACCGTCAGCGAT AATTGTTGCCATAGCCTAGTGAATGACATGGGAAAATCATGTCATGTTGACCTGACAAAATATGGGGCAAGTTCGCCCAC ATTCAAGAAGAACGCAACTGAAATTATGAAGAGATGCTACAAGGTGTGGGATTATTGTAGTCTAGTTCACCTTCATTAGA TTGATACACAGTGATAAGTGGAAGAGAATAAA
CDS sequence (LotjaGi1g1v0156700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCATGAAATCATTCAATAGCTTGTTTGCAGTCATGGCAATTTTGTCTAGTTTAACTTTACTCATTAAAAGATCCCA CAGTTCTCCAGTTGAGGTTAATTATGCCCCAAGACCTTTGTTAGCGTATGGAAAATATTTGAGTAACTGTGCAAGCAAGT TAAAATCAATTTGTGGCCAAGAAATATTTTTAGGAGTATTTGTTGGCAGTCACACCGTCAGCGATAATTGTTGCCATAGC CTAGTGAATGACATGGGAAAATCATGTCATGTTGACCTGACAAAATATGGGGCAAGTTCGCCCACATTCAAGAAGAACGC AACTGAAATTATGAAGAGATGCTACAAGGTGTGGGATTATTGTAGTCTAGTTCACCTTCATTAG
Protein sequence (LotjaGi1g1v0156700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMKSFNSLFAVMAILSSLTLLIKRSHSSPVEVNYAPRPLLAYGKYLSNCASKLKSICGQEIFLGVFVGSHTVSDNCCHS LVNDMGKSCHVDLTKYGASSPTFKKNATEIMKRCYKVWDYCSLVHLH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 28 | 28 | - | – | |
| SignalP_EUK | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 28 | 28 | - | – | |
| PANTHER | 3 | 125 | 123 | 9.4E-43 | – | |
| PANTHER | 3 | 125 | 123 | 9.4E-43 | – | |
| Phobius | 8 | 23 | 16 | - | – | |
| Phobius | 24 | 28 | 5 | - | – | |
| Phobius | 29 | 127 | 99 | - | – | |
| Pfam | 49 | 122 | 74 | 1.9E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0156700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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