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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0158900 |
| Transcript ID | LotjaGi1g1v0158900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glycosyl hydrolase family 35 protein, putative; TAIR: AT5G01075.1 Glycosyl hydrolase family 35 protein; Swiss-Prot: sp|Q7U321|TRMD_HELHP tRNA (guanine-N(1)-)-methyltransferase; TrEMBL-Plants: tr|I1M8S7|I1M8S7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0158900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:29434672..29439802) extracted from Lotus japonicus Gifu genome v1.2.
CTTCAGGCACGTTAGCTGACAGAAAAGCAACGATCGACATTAACAGCAATAAAATACACCAAAACACATAGTATATCAAC AAATATTGAGTTCTGTTTGGGAAGCTCTGGTCTTGTTTCACTTCCAGGTTTTGAGGCAGTTTGGTTTCATGAATCTGCTG TGACCAGAACTTGCTTCTTGTTTTGGAAGTCATTATAACTTGTAGTGTAGTGTGATAGAAATGAAGGTGTCTGGCTTATG TGGTTTGTTTTTGGTGGTTGGGGCAGTTTTCATGTTCTTTAACTTCTTAAGTACTCCTCCAACTTTTGCCTCCAGCTGGT TTCCTGGTAAATATCTTGTTTTCATTATTATTATGAGTTGCATTTTTTTTCAGTTGAGAAGATTATATCTCATGCAACAA TAGTTATGTTTAGTCTTTCTCAAACATAAGAAAAAGTTTATATATAGGTCTGAAACACTAATGCATTACCTTGACTATTG TTTTGCCTATTAGAATTTTAATTTATCTTTACGGGGAGGGGAACATGGTACATGCAGTGGATAAAAGCTACCAAGCTAGA CACTCACTTTCTTTTTCTATCTGTCTTTTCTCTTCTTATATCGCTTATCATATATCTCACTCTCCTTCACTGACTCGGTT TGGGTTGAGGAGGGGCCTCCTGAAGTGCTCCCCTTTATGCTCTCTGATGTAAATGACTTCTATGCCAAACTTTTCTTAAT GATATTTGATAGAATAGGATATTATTTATTCTCTTTGTAATTACGCCTGTAATTAGGGTTTAATATTTATTGTTAGTCAA CTAGGTAAGTTGTATATATAGGGTATTTCATTATCAATAACAGTCACGGAATTGATTTCCTTCATGGTATCATTGAGCAG GTTCAGATCCCCTCTTCCAATCTGACCTAATCCTTTTATTTTATTTCCTAAATTCTCCCTCCAAACCCACCCACTACCGC TGTCTCTCCCCTAGCACCCGCCACACCGCCGTCGCCGCAGCACTCCTCTACTTCTCGCGCCGCCGCCGCCACAGGCCTTC CTCGCTGTCGCCGGTTCTTCCTCTCCCATCGAAGAACTCTCACCACGCTGCACAGGTCTTCTCACCTTGTGCCTGCGTGA CTCTCTGCGCCTCCAGGCTCGTCGGACGTCCCGCCACCACCGCCGTCCCTCCCGCCGGCCACCGCTGTCCCTCGCGCCTT CAACCGCACGCCCACCCGTCGCTTCCAGCCCTTGTTGTTGGCAGCAGACCCGCGTGCCCAGCCGGATCCGATCCAGGATC CAAGTTCCTTTTTTTATTATTATTTTATTTCTTCCCGGTTCGCCAGGATCCAACTCGCCCGGACCGGACCGGTTCCAGCC AACCCGTTTCTATGGCTACCTCCGACTCGACAACTGGCTCTCCAACCGGCGACACCACTACGGTTCCTACGCCCACTGCC ACACCTACGGCCCCTTCGTCCCCCACTGTCAAGCCCGAGTTTCATCCGGCCCTTGCTGTTACTAACATCAAAAACAACAT TCCTTTCAAACTCGAGCTCGACAAGGACCACTATGCTCTGTGGGCTGAATTGTTTGAAACTCATGCTCACGCCACTCAGG TGCTCCACCACATCATTCCACAAGCTGGTTTGGAGCCTCCTGCGCGCACCGATGCTTCCTATGCTCGGTGGGCTACTCTT GACTCTACTGTCAAGCAGTGGATTTATTCCACCATCTCCTTTGATCTTCTCTCCACTGTTATGGAAAAAGGTTCTACTGC TATGGCTACTTGGAACCGTATCGCTTCTATGTTTGAGGACAATCAGAACTCTCGTGCTGTCGCTCTCGACCAGGATTTCA TCTCCACACGCATGGAAGATTTTCCTAATGTTTCGGCCTATTGTCAGCGTCTGAAACATATCTCTGATCAGTTGCGCAAT GTTGGTGCCCCAGTCAGTGACCATCGTCTTGTTCTTCAGTTGGTCTCTGGTCTCACTGAGCCTTTTCGTGGTGTTGCCAC CCTGATCCGTCAGAGCGAGCCTTTGCCTTCTTTCCTCAAGGTCCGCTCCATGTTGATTCTAGAGGAATCTGGTCTCGCCA GGATGTCCGGTCCGGCCTCTCAGACTGCTTTGCACACCTCTGCTTCCCGTCCACAGGCCTCCGTTGACTCCTCTCCGCAG CGCCCCACCTACCGCAGCGATCAGGGCCACTCCAACCATCGTTATGGGTCAGGGCACACTCGCAATTATCAGGGTGGTTC TAGTAAACCTAAGAAGAAAGGTGGCTCCCGTTATCCTGGATCATTTGGCTCCTCTGGTTCCTCTGCTGCATCTCCTCCAC CCTGGCGCCCACCACCGCAGGCATCCTGGAATCCCTGGGGTTGGGCTCCTCCCCCTGGTTGGGCTCCTTCCCCTTGGGGC ATGCCTCCTTGTCCTTACCCCACATCTCAGTGGTCGCGTCCCATGGGTGCTCCGCCGCAACCCGGCGTTTTAGGTCCGCG TCCTCAGGCCTACACCGCTACTGCTTCTCCAGCACCCACTGATATCGCTGCTGCCATGCACACCATGTCCTTGACTCCTA CAGACACCACGTGGTACATGGACACCGGCGCCTCGTCCCATACTGCGGCATCTCAAGGTACTCTCACGTCTTATTCTAAT TTAAGTCATTTAAATCAGAAACTGATAGTTGGTAGTGGTCAGGGCATTCCAATTCAGGGTTCAGGATACACTTCTATTCC TACCCCTCACAAACCTTTAGCACTCAATCATGTCTTGCACACTCCGCGAATTATTAAAAACTTAATTTCTGTGCGACAAC TCACTACTGACAATAATGTTTCTGTTTCTTTTGATCCATTTGGATTCTCGGTGTCTGACTTCAAGACTGGGATGCCTCTC CTGAGATGTAACAGCCTCGGCGACCTCTACCCAGTCACTCGTTCCTCTCCCTTTGCTGGTCTTGCTTCTACTGTCTGGCA CAATCGACTTGGTCATCCAGCTTCCTCAGCTTTAAACCATCTTAGGAATAATAAACTTATTTTTTGTGAACCTTCGCGTT CTAGTTCTGTTTGTGACTCTTGTGTTTTAGGCAAACATGTCCGGTTGCCTTTTCGTTCATCTGAAACTATTACTTTGAGA CCATTTGATATTTTGCATAGTGATTTATGGACGTCTCCTGTTTTAAGTACTGCTGGTCATCGTTATTACGTTTTGTTTTT GGATGATCACACTGATTTTTTATGGACGTTTCCGATTAGCAAGAAATCTCAGGTTTATGAAATGTTTACTACTCTTGCTA CACTTATTCAAACACAATTTTCAGCAAATATTAAATGTCTTCAATGTGATAATGGACGTGAATATGACAATGAATCCTTT CATCGGTATTGTGATGCTAATGGCCTTATTTTTCGCTTCTCTTGCCCTCACACTTCTTCTCAAAACGGCAAAGCAGAACG GAAAATTCGCACCATTAACAACATGATCCGCACCCTCCTCGCTCATTCGTCAGTTCCTCCTTCATTTTGGCATCATGCCC TTCAAATGGCAACATATCTTCTGAACATTTTGCCACGCAAGACTCTTCAGAATGATTCTCCTACTCAGCTGTTGTATCAT CGCGACCCTTCCTACTCCCACTTACGTGTCTTTGGTTGTCTATGTTTTCCTCTATTTCCTTCCGCTACAATAAACAAATT GCAACCACGATCGACTCCGTGTGTTTTTCTAGGGTATCCGATGAATCACAGAGGTTATAAATGTTATGATTTGTCACACA GAAAATTTTTAATATCGCGGCATGTCATTTTTGACGAAACCCGATTTCCCTTTGCTGACCTATCCTTGACTCCTGCCCCT TCTTATGAGTGCTTCACCGAGGACCTCCCTCCTTCCTTGATCCACCATTGGCAAACCGTATCCTCCCGCCCACCTGACCC TCCGGTCCAGCCGTCGAGTCCCACTGATGTAAATGACTTCTATGCCAAACTTTTCTTAATGATATTGTATAATACCTTCA AGCAGTTCCTCTTATCTTTAAGCATTAGATAAAAATGATTATGATGTAACTCAATCTATGTATTGTACGCGTTAAACAAA TTTCTGGCCTGGCCATATAGTACATTTTTTCATGTTCTGGTAGGAAATTTCAGATGCATTTGACTAAGGAGATTAGATAT TAATATGCATGCTTTATTAATTGTTTAGATTCTCAACACAATGTGAAACTTGACTATTTTAATGGCTTCCCAGATTTTGT TGCTACCAGCTGTGGTGATAAACTAACACTGACTTCAGTCATGAGCAGGAAACTGAAGGTATGGATATGCTTTTAAAATC CAAGGAACTGACAATGTATTGCAGTTAAAAATTGTACTAGCTCTATTCTTATTCATAAGTCACATATAACTAATTCTATA TGATTAAGGTTTTATTTTAAGGTACTAAGAAAAGTACTAGACATATACTTGTAAAAAAATATTATCATATTTTCTAAGTT TTTTAGAAAGTTATTGGTAAAAAAAACAGATATATACTATTCATATTTATTAAGTGTTGTTCTGTTCAGGAAAATGGCAG AAGCATGATGAGAAGCAACAATAAGGCTGATATGACTCTGGATGATTATCATCCAATTACTCCAGTACCTGTACCAGCAG GGGGCGAGTCTTTCGTTCATGCTCCTGTTCAGCATGGAACTCCTCTTAATCCATATATACCAAAACCTCCACCTCCTAGT AATCCTGAATAGTTCATGCTAGTGCCAATAATGCTGATCAAATTAGAAATGCTATACTAACATTCTTCTTGAACACTCTT CTACTTAACCCATTGTACTTTATTTTATTGGGTCAAAAGAGTGTTCACAAGGGTACCATGGTAGCATTTCTAAATAAAGA CTGTGCAGTGCAGCTTTTAGTACATTGTTTTTGTTATTCTGCTTGCCCTTCTGTGTAATCCTTGTTTTCTCAATGTGTTT GTTGGGGGAAAACAGTGCTAAATTGTGTGTCTTTTGACTTCCTCTGAAGTGGAGAATGTATGTACTTGGAAGGATCATGT GGATCTCTATGTTAATTAGTTAATTCTTATGTGTGTTTTTGAACCTTTCAATCACTGTTGGTGATAACGAATTTTTATTG TTTTATTTATT
CDS sequence (LotjaGi1g1v0158900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGTGTCTGGCTTATGTGGTTTGTTTTTGGTGGTTGGGGCAGTTTTCATGTTCTTTAACTTCTTAAGTACTCCTCC AACTTTTGCCTCCAGCTGGTTTCCTGATTTTGTTGCTACCAGCTGTGGTGATAAACTAACACTGACTTCAGTCATGAGCA GGAAACTGAAGGAAAATGGCAGAAGCATGATGAGAAGCAACAATAAGGCTGATATGACTCTGGATGATTATCATCCAATT ACTCCAGTACCTGTACCAGCAGGGGGCGAGTCTTTCGTTCATGCTCCTGTTCAGCATGGAACTCCTCTTAATCCATATAT ACCAAAACCTCCACCTCCTAGTAATCCTGAATAG
Protein sequence (LotjaGi1g1v0158900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKVSGLCGLFLVVGAVFMFFNFLSTPPTFASSWFPDFVATSCGDKLTLTSVMSRKLKENGRSMMRSNNKADMTLDDYHPI TPVPVPAGGESFVHAPVQHGTPLNPYIPKPPPPSNPE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 30 | 30 | - | – | |
| Phobius | 1 | 30 | 30 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 116 | 116 | 7.6E-24 | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 18 | 30 | 13 | - | – | |
| Phobius | 31 | 117 | 87 | - | – | |
| MobiDBLite | 97 | 117 | 21 | - | – | |
| MobiDBLite | 103 | 117 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0158900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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