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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0168300 |
| Transcript ID | LotjaGi1g1v0168300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT3G25270.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151SE09|A0A151SE09_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0168300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:31978248..31980375) extracted from Lotus japonicus Gifu genome v1.2.
GGGTTTTGAATTTATAGGTTTATGGAATTAAGTTATGGAGGAAGAGGAAAAAGATGAAGGTGGATGGAAGAACATCGACT AAAATTGATTAAAATTAAATATTTTTCAAGGGGAATAGAGAACTGCAATAGGGTGTTCTGGATGAATAAGGAGACATTAT TCAAACATTATTCATATAAGTGGAGCTTTCTTCTTTACAAGCTTAGGAGGATGAACTTCGATGCCAAATGGATCCGATGG ATACGTGGGTGCCTTTGTTCATCGACGGTATCAGTGCTTATTAATGGTAGCCCAACCGAAGAGTTTAAGATGGAGAAAGG ATTGAGGCAGGGAGATCCGATGGCCCTTTTCCTCTTTCTCATCGTTGCAGAAGGTCTCAACGGAATGCTCAAAAGTGCTA TAGCTTCGGGGAGGTTTGCAGCCTATACTCTTGGTAGCCATAATCCTTTTTGTGTGTCACTCCTCCAATTCACTGATGAT ACTATTTTCTTTGGGGAAGTATCCATTCAGAATGCGGTTCTCCTAAAGTGCATTCTTCGTTGCTTTGAATTAATCTCTGG CTTGAAAGTCAACTTCTCCAAGAGTAGACTTGTGGGGATTGCTACAAGTGAGGTGGTCGAACGACGGATGGCTGCAATCC TCCATTGTAGAACCTCTAATCTTCCTTTTGTGTATCTCGGTTTGCCTATTGGGGGGAACCCGCGGAGTATTCGATTTTGG GATCCGGTGATCCAAAAATTTCGGCAACGACTCTCCAATTGGAAACAAAAGATGTTGTCATTCGGGGGGCGGGTTTGCCT AATCAAGAGTGTTCTTACTGCCCTTCCACTCTATTATATCTCATTCTTCAAAATGCCGGTTGGTGTCATTAAGGAATGTG AGAAGCTGATGAGGAGGTTCCTTTGGGGCTCGGTGTGTGATGAAGATAAAAAAAATAGCATGGGTGAGATGGAGGAGTAT TTGTAGACCAAAGGAAGAGGGAGGGCTTGGGATAAAATATCTAGGGTTGTTCAATAAAGCTCTCCTAGGTAAATGGCGAT GAAGACTTTTGAAGGAAAAGGAAACTCTTTGGTATAAGGTTTTGATGGAAAAATACAATAATGTTGTCCCTCTAAATGCC TCGAGCTGGTGGAAGGACCTCCATTTGCTTTGCTTTGGTGATGGACCCGGAGCTTGGATGGAGGAAGGACTCAAGAGGAA ATTGGGGGAAGGTAATGACGTTAATTTCTGGTTTGAGAATTGGACAGGGCTGGGCAGGTTTTGTGATATTTATGGGAGAT TATTTGCACTTTCCAGCCAGCAGAATGAGGTTATTAAAGATATGGGAAGTTGAGCAATGGAACTTGGCTGTGGGATTTGA AATGGCGTAGAGATATTCTGGCTAGAGAGGAGAATATGGTGGAGGCTCTAAGAATTCAACTCTCTAATTTCACTCCCATT GAAGGCACACAAGACTCTTGGATCTGGACAAAGGATGAAGCTGGAAGGTTCTCAGTGAAGTCAGCTTACGCAGTCCTACA AGGTGAGGTGAGGGAACCAATACATAGAGTCTACCACAAACTATGGTCACTCAAAACACCTTCAAATGTGCTATCTCTGG CCTGGAAAGTTCTACCAAACAGGATTCAGTCAAAGGAAAATCTGAGAAGAAGGAATGCCCTACATGGTACTTCACAGTCT TTATGTTCCCTGTGCTCTCTTGAAGAAGAATCCTCCTCCCACCTCTTTTTCACCTGCATTCAGTCTTGGAAGGTCTGGTG TAAGTTGTATCAGTGGCTAGGAGATACTTCTGCCATGTCAAATGATGGAATTTCTCATTTCCTTCAATTCTTGGGAAGCT TTGCGGGAAAGGACAGAAAAATGGGAAGGGGTTTGTGTGGCTGGCAACTATCTGGAGTCTTTGGAACTATAGAAATAACG TGATATTTCAAGGCAAGGATGTGGACCAGTCAAATGCTTTGGAGCTGATACAATATAAATCTTGGATTTGGCTCAAAGAC AAGGTGAATGGATTTATGTTCACCTTTTATGAATGGTTATCAAATCCTTTGGTGTGCCTGGAAGCTCTTTGATTGTCTTA TAATTCCAACTTTGGCTGGAAAATGGAGAAGGACAGCTTGGTCATGAT
CDS sequence (LotjaGi1g1v0168300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGAGGCTCTAAGAATTCAACTCTCTAATTTCACTCCCATTGAAGGCACACAAGACTCTTGGATCTGGACAAAGGA TGAAGCTGGAAGGTTCTCAGTGAAGTCAGCTTACGCAGTCCTACAAGGTGAGGTGAGGGAACCAATACATAGAGTCTACC ACAAACTATGGTCACTCAAAACACCTTCAAATGTGCTATCTCTGGCCTGGAAAGTTCTACCAAACAGGATTCAGTCAAAG GAAAATCTGAGAAGAAGGAATGCCCTACATGGTACTTCACAGTCTTTATGTTCCCTGTGCTCTCTTGAAGAAGAATCCTC CTCCCACCTCTTTTTCACCTGCATTCAGTCTTGGAAGGTCTGGTGTAAGTTGTATCAGTGGCTAGGAGATACTTCTGCCA TGTCAAATGATGGAATTTCTCATTTCCTTCAATTCTTGGGAAGCTTTGCGGGAAAGGACAGAAAAATGGGAAGGGGTTTG TGTGGCTGGCAACTATCTGGAGTCTTTGGAACTATAGAAATAACGTGA
Protein sequence (LotjaGi1g1v0168300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVEALRIQLSNFTPIEGTQDSWIWTKDEAGRFSVKSAYAVLQGEVREPIHRVYHKLWSLKTPSNVLSLAWKVLPNRIQSK ENLRRRNALHGTSQSLCSLCSLEEESSSHLFFTCIQSWKVWCKLYQWLGDTSAMSNDGISHFLQFLGSFAGKDRKMGRGL CGWQLSGVFGTIEIT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 149 | 144 | 1.8E-21 | – | |
| Pfam | 32 | 121 | 90 | 2.6E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0168300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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