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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0169300 |
Transcript ID | LotjaGi1g1v0169300.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Leucine-rich repeat transmembrane protein kinase; TAIR: AT1G43790.1 tracheary element differentiation-related 6; Swiss-Prot: sp|P23504|SPAP_STRMU Cell surface antigen I/II; TrEMBL-Plants: tr|V7CVS8|V7CVS8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0169300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:32184175..32185462) extracted from Lotus japonicus Gifu genome v1.2.
AACAAGTATAAGCAATACAAGCAAAATAAGCTAAGGAAGTCCAATGAGAAGTGTTTTCCACTGCAAACAACCCCTCAAAA ACTTCGCATGAGCGTCAAGTTACTAACTAAAACAATTGCACAATATTTTTCCACCCTTCATACTTCTCATAAATCCACAC TACAAAAGGACACACCATCCTCAACATTATTCATCAACAATTAACAACATCTATTGATATTAACGCAACACCAAGAACAA GATAAGAGCAGGAGCAAGAGCAAGATGGCCTCAACTCAACCCAACTTCTACTTCCCACACTTCCCTCCTCCACCTTCCCA CCCTTACAACCCTCCAACACCACCTTCCCACCCCTTTAACCCTCCACCAACACCCTCCCATTACTTCAAATCTCCACCAC CCCCCTCTCACTCATTTGCTCCTCCTCCACGAGGACACCCTTCACCACCACCATCATCACCACCACCGCCGTCGTCTCAT CCATTCACTCCTCCACCACCACACGTGCGCCCCCCGCCATCACCACATCACCCTATCACTCCTCCTCCGCACGTGCGTCC ACCCCCACCCCCACTCCCACCCTCACCCTCTCCAAACCACCACACAATCATAGTGATCGTGGTGGTCTCAGTAGGCGGCC TCGCCTTGCTTTCGATGCTCGCCTTCGCGCTTTTCTGCTGCTTCCAGAAGAGGACGCATAAGAAGAAGAAGACACAAGAA ACCGAGGTGATTCATTTCGATGAGCACAAAACCGTCAAGGAAACCATTTTGCCTGGTCCTTTCGGACAGAAAACTGTAGT GATAACAGTTGAAGATGATGTGCACGTTGATGAAGAAATCAGGAAGAATGAGGAAGTAGTTGGCCATGGCCATGGCTTAC ATGATGCCAAGACATCATCATCATCACCAATTACTGAAGCAGAACAAGCTGGCAACACTTCTAGTACAGTTGAGGTGGCA ACTGCTTCTTCTGATCCTGAACATCACCATGATCATCACCTAATTCACAAGCATGAGGAGAACAAGCCCTCTGATTGAAG AATAATTATGAATATATGTTCCCACACGAGAATATTCAAGGACTCCCAACAAGGATCTAAATTACTTTGGTGAATAAAAT ATATCCTTCATTTGTTTGTTTGTTTATATTTTTTTCCCTCATGGTGTATTATTTCAATTGTTAAATTTCCTTCCATCTTG ATGATAACAGTACTTTGTAAGTGTGACTTGAAATATACGAAGTTAATTATTTCTTTTAGGTTGATAAAGTTGATATGAAT TTATCAAA
CDS sequence (LotjaGi1g1v0169300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCTCAACTCAACCCAACTTCTACTTCCCACACTTCCCTCCTCCACCTTCCCACCCTTACAACCCTCCAACACCACC TTCCCACCCCTTTAACCCTCCACCAACACCCTCCCATTACTTCAAATCTCCACCACCCCCCTCTCACTCATTTGCTCCTC CTCCACGAGGACACCCTTCACCACCACCATCATCACCACCACCGCCGTCGTCTCATCCATTCACTCCTCCACCACCACAC GTGCGCCCCCCGCCATCACCACATCACCCTATCACTCCTCCTCCGCACGTGCGTCCACCCCCACCCCCACTCCCACCCTC ACCCTCTCCAAACCACCACACAATCATAGTGATCGTGGTGGTCTCAGTAGGCGGCCTCGCCTTGCTTTCGATGCTCGCCT TCGCGCTTTTCTGCTGCTTCCAGAAGAGGACGCATAAGAAGAAGAAGACACAAGAAACCGAGGTGATTCATTTCGATGAG CACAAAACCGTCAAGGAAACCATTTTGCCTGGTCCTTTCGGACAGAAAACTGTAGTGATAACAGTTGAAGATGATGTGCA CGTTGATGAAGAAATCAGGAAGAATGAGGAAGTAGTTGGCCATGGCCATGGCTTACATGATGCCAAGACATCATCATCAT CACCAATTACTGAAGCAGAACAAGCTGGCAACACTTCTAGTACAGTTGAGGTGGCAACTGCTTCTTCTGATCCTGAACAT CACCATGATCATCACCTAATTCACAAGCATGAGGAGAACAAGCCCTCTGATTGA
Protein sequence (LotjaGi1g1v0169300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASTQPNFYFPHFPPPPSHPYNPPTPPSHPFNPPPTPSHYFKSPPPPSHSFAPPPRGHPSPPPSSPPPPSSHPFTPPPPH VRPPPSPHHPITPPPHVRPPPPPLPPSPSPNHHTIIVIVVVSVGGLALLSMLAFALFCCFQKRTHKKKKTQETEVIHFDE HKTVKETILPGPFGQKTVVITVEDDVHVDEEIRKNEEVVGHGHGLHDAKTSSSSPITEAEQAGNTSSTVEVATASSDPEH HHDHHLIHKHEENKPSD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 242 | 242 | 1.5E-50 | – | |
Phobius | 1 | 114 | 114 | - | – | |
PANTHER | 1 | 242 | 242 | 1.5E-50 | – | |
MobiDBLite | 1 | 107 | 107 | - | – | |
MobiDBLite | 9 | 107 | 99 | - | – | |
PRINTS | 14 | 26 | 13 | 5.6E-11 | – | |
PRINTS | 26 | 47 | 22 | 5.6E-11 | – | |
PRINTS | 48 | 64 | 17 | 5.6E-11 | – | |
PRINTS | 66 | 83 | 18 | 5.6E-11 | – | |
Phobius | 115 | 140 | 26 | - | – | |
TMHMM | 115 | 137 | 23 | - | – | |
Phobius | 141 | 257 | 117 | - | – | |
MobiDBLite | 199 | 257 | 59 | - | – | |
MobiDBLite | 207 | 234 | 28 | - | – | |
MobiDBLite | 235 | 257 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0169300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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