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LotjaGi1g1v0170900.1

Overview

Field Value
Gene ID LotjaGi1g1v0170900
Transcript ID LotjaGi1g1v0170900.1
Lotus japonicus genome version Gifu v1.2
Description Ethylene-responsive transcription factor, putative; TAIR: AT4G27950.1 cytokinin response factor 4; Swiss-Prot: sp|Q9SUE3|CRF4_ARATH Ethylene-responsive transcription factor CRF4; TrEMBL-Plants: tr|I1JYV5|I1JYV5_SOYBN AP2-EREBP transcription factor; Found in the gene: LotjaGi1g1v0170900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:32626093..32627876) extracted from Lotus japonicus Gifu genome v1.2.

AGAGGAAAAAACAACTGTAAAATACTAGCTTTTTCCGATTTCGGCTATTTGATCCTATAAAACAGCGATTTCGGTGTTTC GGTCTTCTCAGCCAGCAAGCAACTGAACTAACTCTTGTTTATTAACCTCGCTCTTCACTCTTACTCATTCAACATCTACT TGTAATCCTTATCACTTCCCTTTCAATTCTCAACAGAATCTGCATCTTCTTTTATTTCCCCATTCTCTTCTGAATCTGAA GTTTCAACGAAAGTCTCATCTAGCCACAGTTGCTAAAAGCTTCTCTTTTAGCACGAGTCAGTTCAGTGTTGTTGTTGTTG TTGTTTTTCATCAACACCACGAAAAGCTTTTTATTTTCTCTTTATTCCTCATTTCCTTTCCACCTCTTCACATTTTAATA CTATTTATGGCGTAATTACTACCTTCCCTTTTCGTTTTCACCCCTTTTAATGCCTTTTTTGGCAGATTTTTTTCATTCTT CTCGCTCACGTTTCATCTTTAGTGTCTATTAAAACACACACACGGTTTCTGTTTGACACAGTGGAGAAAATGGAACAACA ACAACAACAAAACAACATGCTCTGTAAATACACAGAGCACCGAAACGTGACGAAGAAAATCATCACAAAGCCAAAGAAAC AGAGCTTCAACGGTTTCGTTCCCACCGAGCCGAGAGTGGTTCGTGTGTCAGTTACAGATGCAGACGCCACCGACTCTTCC AGCGACGAAGAAGGACAGTCACGGTGTTCCCGGAGGCAGAGGGTGAAGCGCTATATCAACATGATTGAGATTGAACCTTC CTGCAAAACTGTCACCGCCGCCACGAAGAAGAGAAAGAGAGTTGCCGGAGAAACTGTTCCTTGTCGGCGGCCGGTGAAGG TTCTTCCGGCCAACGGAGGGAAAAAGTTTCGCGGCGTGCGGCAGAGGCCGTGGGGGAAATGGGCGGCGGAGATTCGAGAT CCGAATAGCCGTGTCCGCGTCTGGCTGGGGACGTTCAACACCGCCGAGGAGGCTGCCATGCAGTACGACACCGCCGCCAT CAGGCTCCGCGGTCCTGATGCTCTTACAAACTTCGTCACTCCTCCGGCGAGGGTGGAAGCGGAGGCGGAGGAAGCGGCGG CGGCAGTTAGAGCGGAGAAAACTGGATTGAATGTCGTCGTTGTCAAGCAGGACGACGCCTCTGGCTCCGGCTCCGGCAGC GATTCCGGCGACGAGAGCCGCCACGTGTCCTCGCCGACTTCGGTTCTCCGGTTCAGGAGGGAAGCAGAAACATTTGAACC GGAGAAACCGGTCGAACCGGAAGAGATGCGTGCTGATGCTGAACCGACTGAACTGGTTGAACCAGGTGAGTGCGGTTTGT TTAACGATATGCCGGCGTGGGATGAGGTGTTCCGTTTTCCATCAACGCCAGAATACGCCGTTATGTTTGATGAGCCTGCG CCGCACTTGGTTGACGAAACGACACCGTTTTTCTTAACTGAAGGTTTTAATGTTGACAAAACGCACTCTCCATCAATGTC ATTGTGCCAGGTGGAGGATTTCTTCCAAGACATTTTGTTAAGCTCGGATCCTCTTGTGTTGCTGTGAAAGTGAGTGAGTC ACTCACTCATAATTTCTCAGGGTGCTTAAAATCTAAAAAAAAAAAAAAAAGTCTATATTTTATCTATATTAGTTTTTGAA ATTTCCTTTAGGTTAGGTGGGGTTTGGAAGAAACTTTGTTTTTTGTTTTTAGGATTTTATTTATATTTATATTTCAGTTG CTTAATAATTAGGGGTTTGCTGAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0170900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAACAACAACAACAACAAAACAACATGCTCTGTAAATACACAGAGCACCGAAACGTGACGAAGAAAATCATCACAAA GCCAAAGAAACAGAGCTTCAACGGTTTCGTTCCCACCGAGCCGAGAGTGGTTCGTGTGTCAGTTACAGATGCAGACGCCA CCGACTCTTCCAGCGACGAAGAAGGACAGTCACGGTGTTCCCGGAGGCAGAGGGTGAAGCGCTATATCAACATGATTGAG ATTGAACCTTCCTGCAAAACTGTCACCGCCGCCACGAAGAAGAGAAAGAGAGTTGCCGGAGAAACTGTTCCTTGTCGGCG GCCGGTGAAGGTTCTTCCGGCCAACGGAGGGAAAAAGTTTCGCGGCGTGCGGCAGAGGCCGTGGGGGAAATGGGCGGCGG AGATTCGAGATCCGAATAGCCGTGTCCGCGTCTGGCTGGGGACGTTCAACACCGCCGAGGAGGCTGCCATGCAGTACGAC ACCGCCGCCATCAGGCTCCGCGGTCCTGATGCTCTTACAAACTTCGTCACTCCTCCGGCGAGGGTGGAAGCGGAGGCGGA GGAAGCGGCGGCGGCAGTTAGAGCGGAGAAAACTGGATTGAATGTCGTCGTTGTCAAGCAGGACGACGCCTCTGGCTCCG GCTCCGGCAGCGATTCCGGCGACGAGAGCCGCCACGTGTCCTCGCCGACTTCGGTTCTCCGGTTCAGGAGGGAAGCAGAA ACATTTGAACCGGAGAAACCGGTCGAACCGGAAGAGATGCGTGCTGATGCTGAACCGACTGAACTGGTTGAACCAGGTGA GTGCGGTTTGTTTAACGATATGCCGGCGTGGGATGAGGTGTTCCGTTTTCCATCAACGCCAGAATACGCCGTTATGTTTG ATGAGCCTGCGCCGCACTTGGTTGACGAAACGACACCGTTTTTCTTAACTGAAGGTTTTAATGTTGACAAAACGCACTCT CCATCAATGTCATTGTGCCAGGTGGAGGATTTCTTCCAAGACATTTTGTTAAGCTCGGATCCTCTTGTGTTGCTGTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0170900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEQQQQQNNMLCKYTEHRNVTKKIITKPKKQSFNGFVPTEPRVVRVSVTDADATDSSSDEEGQSRCSRRQRVKRYINMIE IEPSCKTVTAATKKRKRVAGETVPCRRPVKVLPANGGKKFRGVRQRPWGKWAAEIRDPNSRVRVWLGTFNTAEEAAMQYD TAAIRLRGPDALTNFVTPPARVEAEAEEAAAAVRAEKTGLNVVVVKQDDASGSGSGSDSGDESRHVSSPTSVLRFRREAE TFEPEKPVEPEEMRADAEPTELVEPGECGLFNDMPAWDEVFRFPSTPEYAVMFDEPAPHLVDETTPFFLTEGFNVDKTHS PSMSLCQVEDFFQDILLSSDPLVLL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31194:SF86
11 341 331 3.0E-75 –
PANTHER
PTHR31194
11 341 331 3.0E-75 –
MobiDBLite
mobidb-lite
48 69 22 - –
CDD
cd00018
118 175 58 1.93874E-32
IPR001471
Gene3D
G3DSA:3.30.730.10
118 177 60 1.1E-29
IPR036955
SMART
SM00380
119 182 64 1.5E-36
IPR001471
SUPERFAMILY
SSF54171
119 176 58 4.71E-21
IPR016177
ProSiteProfiles
PS51032
119 176 58 23.301
IPR001471
Pfam
PF00847
119 168 50 2.0E-13
IPR001471
PRINTS
PR00367
120 131 12 3.1E-10
IPR001471
PRINTS
PR00367
142 158 17 3.1E-10
IPR001471
MobiDBLite
mobidb-lite
207 260 54 - –
MobiDBLite
mobidb-lite
208 230 23 - –
MobiDBLite
mobidb-lite
236 260 25 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0170900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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