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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0176800 |
| Transcript ID | LotjaGi1g1v0176800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Raffinose synthase; TAIR: AT5G40390.1 Raffinose synthase family protein; Swiss-Prot: sp|Q8VWN6|RFS_PEA Galactinol--sucrose galactosyltransferase; TrEMBL-Plants: tr|G7J4U7|G7J4U7_MEDTR Galactinol-raffinose galactosyltransferase; Found in the gene: LotjaGi1g1v0176800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:33936492..33940476) extracted from Lotus japonicus Gifu genome v1.2.
TAAGTATTGAAGCTACTCTCTAGTCTAGTTATACCCTTATCAGTTTATCTCACTTCTTCTAAAACCTTGGAATATTTTCA CAATTTGTGGATCGCTAGCTCACTCAGTCTCTCACTTTCACCACCATGGCTCCAAGCTTGACAAAAAATACGGCCCCAGA CGTAATGACCCTCGTGGACCAAAACTCACCATCCACCATAACCTTAAAAGGCTCAAATTTCTTGGCCAACGGTCACCCTT TCCTCACCGAAGTCCCCTCCAACATAACCGCCACCCCATCACCCTTCCTCTACTCCAAATCCACAGAAGCAGCCAAGATG ATGAACACGGTTGGCTGCTTCGTTGGGTTTGACGCCAACGAGCCAAAAGACCGCCATGTGATTCCCCTCGGAAAGCTGAG GGGAATCCGGTTCATGAGCATATTCCGGTTCAAGGTGTGGTGGACCACTCATTGGACCGGAACCAACGGCCATGAGATGG AGCACGAAACCCAAATGATGATCCTAGACAAAAATGAACTCATAGGACGCCCTTATGTTCTGCTGCTTCCGATCATCGAA GGTTCCTTCCGATCCTCGCTCCAACCCGGGTTCGACGACCACGTGGACATATGCGTTGAGAGCGGGTCGACATGTGTCAG AGAATCTAGCTTCAGGAGCTTTTCAGACTTGTGTGAATTTCCCGATAATATCCACAAATGACTTGTTTTTGGTAAGATAT GTACATTACTATATGCAAACTCAGAAACGTGATATATATTTGTACTCCAATGCATTTCTCCTTCCGAATCAGACCTGTAC ATCCACGCTGGTGATGACCCGTTCCGTCTAGTGAAAGATGCAATAAAGGTCATGTCATGACACGAGTTTTCATATATTCA CGCTCACATTCTTTTAATCTCATTTTCACTATATTTCTCTTCCTTTTTCACTATTCTTCTCTATCATAAATCTATCATAT CTTATGTTTCTTATTTATCAACATGTCTGGTGGGTTTTCTCTTAATTTCTATTTCTATAACTAAAGTGTGAATGTTTCAT TATTTTTCAGGTCGTAAGACTTCACTTAGGGACGTTCAAACTTTTAGAAGAGAAGACCCCACCGAGCGTGGTTGATAAAT TCGGTTGGTGCACGTGGGACGCCTTTTACTTAAAGGTGGACCCCACAGGGGTTCGTGAAGGTGTGAAAGCTCTCACCGAC GGTGGCTGCCCACCGGGGATGATCTTAATCGACGACGGGTGGCAGTCCATCTGTCACGATGAGGATCCGGTGTCAGACTC CTCCGGGATGAACCGAACCTCCGCGGGGGAGCAAATGCCGTGCCGGCTTATAAAGTTTCAGGAGAATCCCAAGTTCAGGG AGTATGGCGGCGGCGGGAAGGGTTTGGGGGCGTTTGTGAGGGATTTGAAGGAGGAGTTTAGGAGCGTGGAGCAGGTGTAT GTTTGGCACGCACTGTGTGGGTATTGGGGTGGGGTGAGACCTCACGTGGAAGGCATGCCGGAGGCGAAGGTGGTTGCTCC GCGGTTGTCTCCGGGGTTGAAGATGACGATGGAGGATTTGGCGGTGGATAAGATTGTGAGTAGCGGTGTGGGGTTGGTGC CGCCGCAAATGGTCCAGAAATTGTACGATGGGCTCCACTCGCATTTGGAATCGGCGGGAATTGACGGTGTTAAGGTTGAT GTCATACATGTAAGTCTTCATTATTCTTTCTTCTTCCTCTTCTTCTAATTAAAAGAGCACAACATACCAGCATGGCAGCA TATATAACAATGAATTAAATTCATCTGAAAGAAAACAATTAAACTATTTTCTGAATATTATAGTATTTTATTTTTTATTT CACCAAGTGTTATTATATATTATTAAACTATTAGCTTGTGCGAGTAATGGACGTCAGTCGCATTAGTAAAAAGTGTACGT TTAAACTCGTAAATTGAGAGTTTAATTCAATTCGTCCGCACCCTTAAATAAATCTTTTGACCTTTACCACATGAGATTTA GATTTATGAGAACAATTTAACATTTACCTTTTGGGCATGGAATCTTGCTGTAAAAATATTAAAAAGAAAGATAATATAGT ATGTTTAATTTTGTAATCAGTTTAACATTAATAGTAGTGCACAAATAATTGATACTAGTTAAGCCCATATACATGGTAAT GTTCTTTTTTGAAACATAAAAATAAGAGTTGTACTGAAAAACAAAAATATAAGATCAAAACAGAGACATTATCTTGATAA TTCAAGTGTCAAATGTCACTGCCTGATGTTTAGCATTTTTGCAGTTGCTAGAGACGCTATCTGAGGAATACGGTGGCCGA GTCGACCTTGCAAAAGCTTATTACAAAGCACTCACTACTTCAGTGAAGAAGCATTTCAAAGGCAATGGAGTGATTGCCAG CATGGAGCATTGCAATGACTTCTTCCTTCTAGGCACAGAAGCCATAGCCCTTGGCCGCGTAGGTAAGCATTAAATCAAAT TAAGCATTGTAACTTCATTTCATAGATGACATGTTGTAAGTTATATTATAACACAACATGCATGTTTTATATCTGATCCC TTCTTTTTGATCAACAGGTGATGATTTTTGGTGCACTGATCCCTCAGGAGATGTAAACGGAACCTATTGGCTCCAAGGGT GTCACATGGTGCATTGTGCCTACAACAGCTTGTGGATGGGAAATTTCATTCACCCGGACTGGGACATGTTCCAGTCCACT CACCCTTGCGCCGAGTTCCACGCTGCCTCTAGAGCCATCTCCGGCGGCCCCATTTACGTTTCTGATTGCGTTGGAAAGCA CAACTTTAAGCTTCTCAAGACCCTCGCCTTGCCTGATGGCTCGATTTTGCGCTGTCAAGGCTACGCGCTCCCCACCCGAG ACTGCTTGTTCCAAAACCCCTTGCATGATGGCAAAACAATGCTCAAAATTTGGAATCTCAACAAAGTAAGTGTGTGTTTG CATTTCTGTTAACATTTAACTAAACTATAAAAAGACATGAATCGGCCAAAAGCACATTCAAATTACTTTCGAATCTGCAC TCACAGTAATTACAACTAAAAATCTAAACATTTTCCATCATTAATGAATTCAATTTCTTTAATTATATAACTTGTTGGGT TTGTGTATGTAGTTTATTTTCAAAATAGTTTCAATGGCATTTTATGAACATCTTTATTTTGTTCATTATATGCAGTACAC AGGTGTTTTGGGTCTATTTAATTGCCAAGGTGGAGGGTGGTGTCCTGTGACTAGGAGAAACAAGAGTGCCTCTGAATTTT CACACACTGTGACATGCTCAGCGAGGCCTAAAGATATTGAATGGAGCAATGGGAAATGCCCAATTTGCATCGAAGGCGTG GATGTGTTTGCTGTGTATTTGTTCAAGGAAGGCAAGCTTAAGCTCATGAAGTCCTCTGATGAGTTGAAAGTTTCACTTGA GCCATTCAGTTTTGAGCTGCTCACAGTTTCGCCAGTGACATCCTTCTCGAAAAGGATGATTCAATTTGCTCCAATTGGGT TAGTGAACATGCTTAACTCTGGTGGTGCCATTCAGTCTATGGAGTTTGATGATCACGCGAGCCTGGCCAAAATTGGGGTG AGGGGTTGTGGGGAGATGAGGGTCTTCGCGTCTGAGAAGCCAGTTAGCTGCAAAATAGATGGTGTTGCTGTGACATTTGA TTACGAAAATCGAATGGTAAGGGTCCAGGTTCCGTGGCCTAGTTCTTCAACTGTGTCAGTGGTTGAGTTTCTATTTTGAT CCCTAACATGGTTAAGTTGGGACACTAAGATGTATAGCTCTATATTTCATGTGAATAACAAGTGTGTTTATCTATTTCAT TTTAACTCGGCGTTTACTCATTGTATTTTCCAGTTGATAAATAATTGAATTTAGTTGTTAGTAGCAGGTTGGTTATTGTA GCTTGCATTATGTCATTTGGAGTCTTCAATTTCATTGTGTATAAAAGATCACTGTTTGTAAAATT
CDS sequence (LotjaGi1g1v0176800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCTGCTGCTTCCGATCATCGAAGGTTCCTTCCGATCCTCGCTCCAACCCGGGTTCGACGACCACGTGGACATATGC GTTGAGAGCGGGTCGACATGTGTCAGAGAATCTAGCTTCAGGAGCTTTTCAGACTTGTGTGAATTTCCCGATAATATCCA CAAATGACTTGTTTTTGGTCGTAAGACTTCACTTAGGGACGTTCAAACTTTTAGAAGAGAAGACCCCACCGAGCGTGGTT GATAAATTCGGTTGGTGCACGTGGGACGCCTTTTACTTAAAGGTGGACCCCACAGGGGTTCGTGAAGGTGTGAAAGCTCT CACCGACGGTGGCTGCCCACCGGGGATGATCTTAATCGACGACGGGTGGCAGTCCATCTGTCACGATGAGGATCCGGTGT CAGACTCCTCCGGGATGAACCGAACCTCCGCGGGGGAGCAAATGCCGTGCCGGCTTATAAAGTTTCAGGAGAATCCCAAG TTCAGGGAGTATGGCGGCGGCGGGAAGGGTTTGGGGGCGTTTGTGAGGGATTTGAAGGAGGAGTTTAGGAGCGTGGAGCA GGTGTATGTTTGGCACGCACTGTGTGGGTATTGGGGTGGGGTGAGACCTCACGTGGAAGGCATGCCGGAGGCGAAGGTGG TTGCTCCGCGGTTGTCTCCGGGGTTGAAGATGACGATGGAGGATTTGGCGGTGGATAAGATTGTGAGTAGCGGTGTGGGG TTGGTGCCGCCGCAAATGGTCCAGAAATTGTACGATGGGCTCCACTCGCATTTGGAATCGGCGGGAATTGACGGTGTTAA GGTTGATGTCATACATTTGCTAGAGACGCTATCTGAGGAATACGGTGGCCGAGTCGACCTTGCAAAAGCTTATTACAAAG CACTCACTACTTCAGTGAAGAAGCATTTCAAAGGCAATGGAGTGATTGCCAGCATGGAGCATTGCAATGACTTCTTCCTT CTAGGCACAGAAGCCATAGCCCTTGGCCGCGTAGGTGATGATTTTTGGTGCACTGATCCCTCAGGAGATGTAAACGGAAC CTATTGGCTCCAAGGGTGTCACATGGTGCATTGTGCCTACAACAGCTTGTGGATGGGAAATTTCATTCACCCGGACTGGG ACATGTTCCAGTCCACTCACCCTTGCGCCGAGTTCCACGCTGCCTCTAGAGCCATCTCCGGCGGCCCCATTTACGTTTCT GATTGCGTTGGAAAGCACAACTTTAAGCTTCTCAAGACCCTCGCCTTGCCTGATGGCTCGATTTTGCGCTGTCAAGGCTA CGCGCTCCCCACCCGAGACTGCTTGTTCCAAAACCCCTTGCATGATGGCAAAACAATGCTCAAAATTTGGAATCTCAACA AATACACAGGTGTTTTGGGTCTATTTAATTGCCAAGGTGGAGGGTGGTGTCCTGTGACTAGGAGAAACAAGAGTGCCTCT GAATTTTCACACACTGTGACATGCTCAGCGAGGCCTAAAGATATTGAATGGAGCAATGGGAAATGCCCAATTTGCATCGA AGGCGTGGATGTGTTTGCTGTGTATTTGTTCAAGGAAGGCAAGCTTAAGCTCATGAAGTCCTCTGATGAGTTGAAAGTTT CACTTGAGCCATTCAGTTTTGAGCTGCTCACAGTTTCGCCAGTGACATCCTTCTCGAAAAGGATGATTCAATTTGCTCCA ATTGGGTTAGTGAACATGCTTAACTCTGGTGGTGCCATTCAGTCTATGGAGTTTGATGATCACGCGAGCCTGGCCAAAAT TGGGGTGAGGGGTTGTGGGGAGATGAGGGTCTTCGCGTCTGAGAAGCCAGTTAGCTGCAAAATAGATGGTGTTGCTGTGA CATTTGATTACGAAAATCGAATGGTAAGGGTCCAGGTTCCGTGGCCTAGTTCTTCAACTGTGTCAGTGGTTGAGTTTCTA TTTTGA
Protein sequence (LotjaGi1g1v0176800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFCCFRSSKVPSDPRSNPGSTTTWTYALRAGRHVSENLASGAFQTCVNFPIISTNDLFLVVRLHLGTFKLLEEKTPPSVV DKFGWCTWDAFYLKVDPTGVREGVKALTDGGCPPGMILIDDGWQSICHDEDPVSDSSGMNRTSAGEQMPCRLIKFQENPK FREYGGGGKGLGAFVRDLKEEFRSVEQVYVWHALCGYWGGVRPHVEGMPEAKVVAPRLSPGLKMTMEDLAVDKIVSSGVG LVPPQMVQKLYDGLHSHLESAGIDGVKVDVIHLLETLSEEYGGRVDLAKAYYKALTTSVKKHFKGNGVIASMEHCNDFFL LGTEAIALGRVGDDFWCTDPSGDVNGTYWLQGCHMVHCAYNSLWMGNFIHPDWDMFQSTHPCAEFHAASRAISGGPIYVS DCVGKHNFKLLKTLALPDGSILRCQGYALPTRDCLFQNPLHDGKTMLKIWNLNKYTGVLGLFNCQGGGWCPVTRRNKSAS EFSHTVTCSARPKDIEWSNGKCPICIEGVDVFAVYLFKEGKLKLMKSSDELKVSLEPFSFELLTVSPVTSFSKRMIQFAP IGLVNMLNSGGAIQSMEFDDHASLAKIGVRGCGEMRVFASEKPVSCKIDGVAVTFDYENRMVRVQVPWPSSSTVSVVEFL F
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 50 | 641 | 592 | 0.0 | – | |
| PANTHER | 50 | 641 | 592 | 0.0 | ||
| Pfam | 55 | 624 | 570 | 5.8E-267 | ||
| SUPERFAMILY | 78 | 414 | 337 | 9.73E-49 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0176800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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