Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi1g1v0181600 |
Transcript ID | LotjaGi1g1v0181600.6 |
Related isoforms 5 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Myb/SANT-like DNA-binding domain protein; TAIR: AT5G27260.1 Myb/SANT-like DNA-binding domain protein; Swiss-Prot: sp|O82368|Y2988_ARATH Uncharacterized protein At2g29880; TrEMBL-Plants: tr|A0A072UYX1|A0A072UYX1_MEDTR Myb/SANT-like DNA-binding domain protein; Found in the gene: LotjaGi1g1v0181600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:35386300..35391709) extracted from Lotus japonicus Gifu genome v1.2.
GCCACTACCCACAATTTTTTCTGGAGGAATCCCAGAAAGTCTCTAACTGAATCCTCAGTGTCGTTGTATATATTGTGACC TGCATTAAGTTCCAATCATCATCCCTCTCTAGATCTGGCTCACCTTGCTCTGTGCAGGTTAGAAAGTTTCGTTTTTTGTG CCCAGATTTTTCATATGTGGTGCGGATGAACATACCCATTGCTTTTGCTATATATATGTCGTGCTTTTCACCTAGCTACC CCCTTTTCAATTTGCTTTTGCATAGAGTCATTTTGCTATATCCAACGCCCCTTAGTCAAAAAATTTCACTTGCTTTTTCT ATATCCATTTCAATTTTCCCATCAAGTTTCTAACTTTGCTGCTATTGACCCACCTACTTCTTTGTTTTAGGTGGTGTTTG TGGCCCTGACTATCTAAATTGGTGTGAGAAGTTGGACCCAACACTAGCTCAGTTCTCATTCCTTCGAAGGTACCCTTAAT TTGCAATGTTATTTTTTCAATTAATTGCTTTAGTTTATATTATCTTTTTCTCTTGTGTATGTGTTTGATTATTGTACTGA TTTAGCCTTTTTTTAAGTTGGATGATAAACTCTATACCCAGTAGTTAAGCAAAATTTAATCTTTCTCAATCTCAAGCACT TTTTTTCCTACTTTTGTTTTTCTTCATTTATACTATTCTCGAATGATTTAACTGAGTTCATCTAATATTTACTCAAGGGT ATATATGCACAAGGGGCTACTGGAACAAAACAGATGTAGTTTCTTTAGCTTTTTAGATGAACTTACACTTCATTTTTCAT TAGTTAACTAAGTCTGAATTCCATTATAGGCCTATACTTTCAATGTGTGTCTGTCATGTATCTTAGTTATTGGAATGGTT ATTTGTTTTGCATGCTGATCTTTCAAAATTTAAATCTGAACAAATTGTTTCCAGTTCTGTTTTAGTTTCTTGCCATCCCT TTTCTTGAACCATTTTATTTACTATTTTTATGTGTATGTGAGATAGTATTATGGAGATCTTCCAAGTATAATTTAATTTT GATCATGGCAGAATCGATGGAACCACGACAAAGGAAGAAAAGGATTGTAGCAATATTAATAATATATTTACAGATGTTGA ATTGCTTAGCTTTGTTTATGATGTTTATATGCTACCATGTTCTAAGTAGGCGGTTGAAAAAGCGAAAGAGATCATGGGAT TGTTATGAAAGAAGTTTAATTCGAGAGGTCCATTTCCATAGGATTATTTTCATGAATGATGTGGCTTGTATTGAGAATAC AAGAATGGATAGAGCGGCATTTCATAAGCTGTGTGAAATGTTGAGAACTGTAGGTGGACTACTTCCTACTAGGCATATGT GTGTTGAAGAGTTAGTGGCCATGTTCTTACACATACTAGCACATCATGCAAAAAACCGAATAATAAAAAGACAATTTGTT AGGTCGGGGGAAACAATTAGTAGACACTTTTCAAAAGTTTTATTGGCAGTTTTGAGGTGTCATGAAGAATTGTTAAAACA ACCTAGGCCTATTTTGGAAAACAGCACTGATGGAAGATGGAAATACTTCCAGGTACATAAGAAAATTAATCAAATCTGTT TTTTATTAACATCTGACTTAAACTTTAGTTGCTATGTATTAACTGTTATAGTTATGGAAATGTATAGAATTGTCTAGGAG CTCTTGATGGCACATACATCAGGGTCAATGTGCCCGAAGCTGAAAAAAGTAAATACAGAACAAGGAAAGGCGAGATAGCT ATGAATGTGTTAGGTGTATGTTCTCCGGATATGCAATTCATATATGTTTTGCCTGGGTGGGAGGGTTCAGCTGCTGACTC TAGGGTCCTCAGAGATGCTATTTCTCAACCTAATGGATTAAAGGTTCCTCAAGGTATAGAGTACAAATTTATATAATAAA CAATCCATGGTATTATGTATTTTGTCATAATAATATTAATTTTATTCATGATAGGGCATTATTATTTATGTGATGCTGGC TATATGAATGGGGAAGGATTTCTTACTCCTTATAGATCTCAAAGATATCACCTAAGTGAGTGGAGGAATGGAGCACAACC AACTACACCAAAAGAATTTTTCAATATGAAACATTCTTCTGCTAGAAATGTGATTGAAAGATGTTTTGGACTCTTGAAAG GACGGTGGGCTATATTGAGAGAAAAATCATTCTATCCTGTTAAAACCCAAGGAAGAATAATCACTGCTTGTTGTCTTTTA CATAACCATATCCGCAAAGAAATGGCTGTGGATCCATTGGAAACAAATTTAGGTGATCTAGATTCCTCAAATGAAGTCAT GTTCGGTGACATGATAACCGTCGTGGAACCAAGTGATACATGGAGTCGATGGAGGGATGATTTAGCACAACAAATGTTTA ATACATGGAGAGCTGGACATCATTGATAAATTTTATGTCATGTCATGCTATTTTGTTTTTTTTTGTAAATTTTATTTTAA ATGTACTGTCCACTTTCAGTCATGTATATATCGTGAATTTGGTTTTTATAATTGTTTTATCTATGCAATAATGTATTTGT AATATAGATGGAAGGCACAACTGAATCACAGCAATCAAAAAAACGACAATGGACTGCAGAAGAAGATGCAGTATTGGTGG CTGGTTTGTTGCAATTGGTGGATGATGGATGGAAAGCTGATGCTAACTCGTTTAAACCTGGGTATACAAAAGTATTGGAG AAGCATCTTCAAACAAAGATTCCAGATTGCAAACTGAAAGCAAGTCCTCACATCGAATCAAGAGTAAAGCATATCAAGAA GCAATATTTTGCAATCAAAGATATGTTTGGTCCAAGTGCAAGTGGTTTTGGGTGGGATCCTACTAGGAATATGATTGTGG TAGAAAGAGAAATATACAGAGAATGGTGCAAGGTAATGTGTGATATACCATTTATAATAGTATTTTTTAAATTAAACATA CAATTCATACATCTTTTTGATACATTTTTTTTGTTTGATGCAGTCACACCCTGTTGCAGTTGGTTTGTATGGCAAACCGT TTCCTCACTTTGATAGTCTGGATATTGTGTTTGGGAAAGATAGGGCAACAGGAACTCATGCAGAAAGTCCAGCTGATGCC GCATTTGCTATGATGAAGGAGTTTTTTCCAACAGAAGAAGGTGGTGAGCCTGAAGTAAATTTGAATGAAGATGATAACAA CAACATTGAGTCTCAATTCCCAGAAGTACCTACATATGACAACACTCAAGGAGCAAGACCAATGGGTCTTGATGCTTCTG GATCTAGAGGTGGACGGCGTGGGTGTAAAAAAGCCAAGCAGAATGATGACATTAGTGAAAGCTTAGCCAATTCAATGAGC AAATTTGGTGAGTTCTATGCTGGAACTGTTGAGAATATTAACCGACTAACATCTTGCTTTTTACCTGAGAAAGAGACAGC TGATCGGAGGACTCAAGTTTACTCAATGTTAAGAGAAATTGAAGGATTGTCTAACGCGGATGTGATAAAGGCAGCTATAT TGATCACCAACAACAGTAATCTGAGCGACTGCTTTTTTTCTGTTGATACACTCGAAATGAAGGAGGAATTCGTGCGCTAT GTTTTGAATAACAATGGTGTTTGAATTTGTTAGCTTTATATTTGTTAATTTTATGAGTACTTAGTATTTAAATTTCGTTT TTAGAAGGACAAGTCTTAATTAAGTTTGAATAATATGCAGTTCTAGTATTATTTCACAATGGTGTTTGAATTTGTAACTG AAAGATTGCATATTTATTGGAGTTCCCAGTTCTATCACAAGGTAAATTGAGCTGCTGCAGAACTGCAATATTTGATGCTG TGAAATTTGCATTTTGAGCTGGTACCGATCTGCAAAATTGGTGTTTGCATCTTCTCTAAGATGTTGCTGCAGCTATATTG GTGTAGTTCTTGGCTGGTTTCGTTTGATATGCTGGTTCACTCACCTTATTGGAGGTTGCCTTGGTCTTGCTCTTTTCATT TCTAGTTAGTTGATGTACTAGTTAGTTTGGTTCTAGCTTTCTAGTCTGTTGTTCTTGTTCTGTTTTTTTTTTTTTTTTTT TTTTTTTTTCTGTTTTTGCATTGTATCTTCCTTTGTTGTTGTTCTCACTTGAGAGAGTTTGTTCTCAAGATCACCTTATT TCTAATATATTTTCATTTTCAAAAAAAAGATTGCATATTTATATCAGTTTTTAATTGGTTTTGTTGGTTGGAAACTTTGG TGCTGCAAATGGTATCTATTTGGGATTTGAGGAACTCAGTTGGATTGTGTTTTGGCTTCACTGGTGTGTGCTTTGGTTAA TCAAGGTCTGTTGAAATTTTGGTGATTTGTGGGTGGGCTTTTGGCGTGTTCTTGGTGGGCCATGGAGTGGATTTTGGAAG CAATTTTCACCTTCAATAGGAGGCTTGTTAGTGCTGATTTGTTGCAGCATTCCTCTGGTTATTCTACACTCTTGGTGCTT GTTTCATTCCAAAGTCATGAGTGTTATATAAGAACTGGTAGGTCCTATGGTATCCCTTATTTATTTAACACTTGCTTACC CATATTCTGAGTTTCCTGGCACTGTACTGGCTGAATTGATTGTTGAATATTGTTTCCTTTGGAAAGTACTGGTACATGCA CCATAATTTGGGGAAATAATAAAATGTTGTTTTACTTCATATTTACAGTTTTTTCCATGTGAGCCTCAGCTTTCCTTCTT ATTTCAGCGGACAAGAGTACAGGATTGGCATATTTTGGAAGTGAGTCCTGCTGTTGCTTCTTCTCCCTAAGCCAGTTCTC AGCTTCAACACATTCATTTAAGACCTTTGTTTCTCGTTGATCTCAATGTGATCAAATTTAGGATCCTTTGACATTGTAGC TTCTCTGTAACTATTTATACAATAGGTAAACTGATCAATTATTATACCCCTCTCAGTGTATTCTTTGTAACGCACTTCGA TTGGATCACCTTGCATTTTTAGTTCTTCAAATAAATATAAACGTTAGTATGGTGGTTATATAACAAGGGTATTTTAAGAA TTTTCCAATCTATTCCCAGGAATATACATTTTGAACCAAACATATATTGTAATTATACCCAGGAATATTGGAAAAGATTC CCGGGAATTGATTTTGTGAACCAAACAGATTTTTTAAAGATGCCTGGGAATAGCATTCCCATCATAATATTCCCGGGAAC AACATTCCCGGGTATCCTTTTCCAATCCGTGAAACAAACGCCCCCTCACATAAGGGTTTTTCTCCCATGTAATGAAGGTC TATTTTAAACTTATTATGTGGTTACTTTTTGTTATTTTAGCTGGTGGTAATCAACTTTATTTGCCTTTTCAGTTTTCACC ACTTTTCTACTTTTCTGAGTACTTTTCATGTTTTTTCATCTTCTCTGATA
CDS sequence (LotjaGi1g1v0181600.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGCACAACTGAATCACAGCAATCAAAAAAACGACAATGGACTGCAGAAGAAGATGCAGTATTGGTGGCTGGTTT GTTGCAATTGGTGGATGATGGATGGAAAGCTGATGCTAACTCGTTTAAACCTGGGTATACAAAAGTATTGGAGAAGCATC TTCAAACAAAGATTCCAGATTGCAAACTGAAAGCAAGTCCTCACATCGAATCAAGAGTAAAGCATATCAAGAAGCAATAT TTTGCAATCAAAGATATGTTTGGTCCAAGTGCAAGTGGTTTTGGGTGGGATCCTACTAGGAATATGATTGTGGTAGAAAG AGAAATATACAGAGAATGGTGCAAGTCACACCCTGTTGCAGTTGGTTTGTATGGCAAACCGTTTCCTCACTTTGATAGTC TGGATATTGTGTTTGGGAAAGATAGGGCAACAGGAACTCATGCAGAAAGTCCAGCTGATGCCGCATTTGCTATGATGAAG GAGTTTTTTCCAACAGAAGAAGGTGGTGAGCCTGAAGTAAATTTGAATGAAGATGATAACAACAACATTGAGTCTCAATT CCCAGAAGTACCTACATATGACAACACTCAAGGAGCAAGACCAATGGGTCTTGATGCTTCTGGATCTAGAGGTGGACGGC GTGGGTGTAAAAAAGCCAAGCAGAATGATGACATTAGTGAAAGCTTAGCCAATTCAATGAGCAAATTTGGTGAGTTCTAT GCTGGAACTGTTGAGAATATTAACCGACTAACATCTTGCTTTTTACCTGAGAAAGAGACAGCTGATCGGAGGACTCAAGT TTACTCAATGTTAAGAGAAATTGAAGGATTGTCTAACGCGGATGTGATAAAGGCAGCTATATTGATCACCAACAACAGTA ATCTGAGCGACTGCTTTTTTTCTGTTGATACACTCGAAATGAAGGAGGAATTCGTGCGCTATGTTTTGAATAACAATGGT GTTTGA
Protein sequence (LotjaGi1g1v0181600.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGTTESQQSKKRQWTAEEDAVLVAGLLQLVDDGWKADANSFKPGYTKVLEKHLQTKIPDCKLKASPHIESRVKHIKKQY FAIKDMFGPSASGFGWDPTRNMIVVEREIYREWCKSHPVAVGLYGKPFPHFDSLDIVFGKDRATGTHAESPADAAFAMMK EFFPTEEGGEPEVNLNEDDNNNIESQFPEVPTYDNTQGARPMGLDASGSRGGRRGCKKAKQNDDISESLANSMSKFGEFY AGTVENINRLTSCFLPEKETADRRTQVYSMLREIEGLSNADVIKAAILITNNSNLSDCFFSVDTLEMKEEFVRYVLNNNG V
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 5 | 304 | 300 | 1.2E-80 | – | |
PANTHER | 5 | 304 | 300 | 1.2E-80 | – | |
Pfam | 14 | 110 | 97 | 6.4E-10 | ||
MobiDBLite | 191 | 223 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0181600.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…